Plant and animal endemism in the eastern Andean slope: challenges to conservation

Background

The Andes-Amazon basin of Peru and Bolivia is one of the most data-poor, biologically rich, and rapidly changing areas of the world. Conservation scientists agree that this area hosts extremely high endemism, perhaps the highest in the world, yet we know little about the geographic distributions of these species and ecosystems within country boundaries. To address this need, we have developed conservation data on endemic biodiversity (~800 species of birds, mammals, amphibians, and plants) and terrestrial ecological systems (~90; groups of vegetation communities resulting from the action of ecological processes, substrates, and/or environmental gradients) with which we conduct a fine scale conservation prioritization across the Amazon watershed of Peru and Bolivia. We modelled the geographic distributions of 435 endemic plants and all 347 endemic vertebrate species, from existing museum and herbaria specimens at a regional conservation practitioner's scale (1:250,000-1:1,000,000), based on the best available tools and geographic data. We mapped ecological systems, endemic species concentrations, and irreplaceable areas with respect to national level protected areas.

Results

We found that sizes of endemic species distributions ranged widely (< 20 km² to > 200,000 km²) across the study area. Bird and mammal endemic species richness was greatest within a narrow 2500-3000 m elevation band along the length of the Andes Mountains. Endemic amphibian richness was highest at 1000-1500 m elevation and concentrated in the southern half of the study area. Geographical distribution of plant endemism was highly taxon-dependent. Irreplaceable areas, defined as locations with the highest number of species with narrow ranges, overlapped slightly with areas of high endemism, yet generally exhibited unique patterns across the study area by species group. We found that many endemic species and ecological systems are lacking national-level protection; a third of endemic species have distributions completely outside of national protected areas. Protected areas cover only 20% of areas of high endemism and 20% of irreplaceable areas. Almost 40% of the 91 ecological systems are in serious need of protection (= < 2% of their ranges protected).

Conclusions

We identify for the first time, areas of high endemic species concentrations and high irreplaceability that have only been roughly indicated in the past at the continental scale. We conclude that new complementary protected areas are needed to safeguard these endemics and ecosystems. An expansion in protected areas will be challenged by geographically isolated micro-endemics, varied endemic patterns among taxa, increasing deforestation, resource extraction, and changes in climate. Relying on pre-existing collections, publically accessible datasets and tools, this working framework is exportable to other regions plagued by incomplete conservation data.     

A database of schemes that prioritize sites and species based on their conservation value: focusing business on biodiversity

Background  

Biodiversity offsets are conservation projects used mainly by business to counterbalance the environmental impacts of their operations, with the aim of achieving a net neutral or even beneficial outcome for biodiversity. Companies considering offsets need to know: (1) if there are areas of such biological importance that no impact is acceptable, and outside of these no-go areas, (2) the relative importance of biodiversity in the impacted site versus the site(s) proposed for protection, to ensure that the offset is of equal or greater status than that lost through the company's operations. We compiled a database of 40 schemes that use various methods to assess conservation priorities, and we examined if the schemes would allow companies to answer the above questions.     

Impact of biodiversity-climate futures on primary production and metabolism in a model benthic estuarine system

Background  

Understanding the effects of anthropogenically-driven changes in global temperature, atmospheric carbon dioxide and biodiversity on the functionality of marine ecosystems is crucial for predicting and managing the associated impacts. Coastal ecosystems are important sources of carbon (primary production) to shelf waters and play a vital role in global nutrient cycling. These systems are especially vulnerable to the effects of human activities and will be the first areas impacted by rising sea levels. Within these coastal ecosystems, microalgal assemblages (microphytobenthos: MPB) are vital for autochthonous carbon fixation. The level of in situ production by MPB mediates the net carbon cycling of transitional ecosystems between net heterotrophic or autotrophic metabolism. In this study, we examine the interactive effects of elevated atmospheric CO₂ concentrations (370, 600, and 1000 ppmv), temperature (6°C, 12°C, and 18°C) and invertebrate biodiversity on MPB biomass in experimental systems. We assembled communities of three common grazing invertebrates (Hydrobia ulvae, Corophium volutator and Hediste diversicolor) in monoculture and in all possible multispecies combinations. This experimental design specifically addresses interactions between the selected climate change variables and any ecological consequences caused by changes in species composition or richness.     

Genetic variation in the invasive avian parasite, <Emphasis Type="Italic">Philornis downsi</Emphasis> (Diptera,Muscidae) on the Galápagos archipelago

Background  

Understanding the dispersal and genetic structure of invasive insects across islands is important for designing management plans that are appropriate at spatial and temporal scales. For invasive parasites, population dynamics are largely determined by the distribution and density of their host species. The introduced parasitic fly, Philornis downsi, parasitises nestlings of endemic birds on all major islands of the Galápagos archipelago. The fly's high mortality and fitness impacts are of conservation concern for vulnerable and declining species of Darwin's finches. Using microsatellite data in Bayesian clustering and landscape genetic analyses, we examine gene flow and dispersal in P. downsi between three islands and across habitats (highlands, lowlands) and examine for the presence of population bottlenecks. We also examine variation at the mitochondrial gene CO1 across islands to establish if cryptic species were present.     

Longevity and growth of <Emphasis Type="Italic">Acacia tortilis</Emphasis>; insights from <Superscript>14</Superscript>C content and anatomy of wood

Background  

Acacia tortilis is a keystone species across arid ecosystems in Africa and the Middle East. Yet, its life-history, longevity and growth are poorly known, and consequently ongoing changes in tree populations cannot be managed in an appropriate manner. In other arid areas parenchymatic bands marking growth zones in the wood have made dendrochronological studies possible. The possibilities for using pre- and post-bomb ¹⁴C content in wood samples along with the presence of narrow marginal parenchymatic bands in the wood is therefore tested to gain further insight into the age, growth and growth conditions of A. tortilis in the hyper-arid Eastern Desert of Egypt.     

Phenols content and 2-D electrophoresis protein pattern: a promising tool to monitor <Emphasis Type="Italic">Posidonia</Emphasis> meadows health state

Background  

The endemic seagrass Posidonia oceanica (L.) Delile colonizes soft bottoms producing highly productive meadows that play a crucial role in coastal ecosystems dynamics. Human activities and natural events are responsible for a widespread meadows regression; to date the identification of "diagnostic" tools to monitor conservation status is a critical issue. In this study the feasibility of a novel tool to evaluate ecological impacts on Posidonia meadows has been tested. Quantification of a putative stress indicator, i.e. phenols content, has been coupled to 2-D electrophoretic protein analysis of rhizome samples.     

Determination of the genetic structure of remnant Morus boninensis Koidz. trees to establish a conservation program on the Bonin Islands, Japan

Background  

Morus boninensis, is an endemic plant of the Bonin (Ogasawara) Islands of Japan and is categorized as "critically endangered" in the Japanese red data book. However, little information is available about its ecological, evolutionary and genetic status, despite the urgent need for guidelines for the conservation of the species. Therefore, we adopted Moritz's MU concept, based on the species' current genetic structure, to define management units and to select mother tree candidates for seed orchards.     

Management effect on bird and arthropod interaction in suburban woodlands

Background  

Experiments from a range of ecosystems have shown that insectivorous birds are important in controlling the populations of their invertebrate prey. Here, we report on a large field experiment testing the hypothesis that management for enhancing recreational values in suburban woodlands affects the intensity of bird predation on canopy-living arthropods. Bird exclosures were used in two types of management (understory clearance and dense understory) at two foraging heights in oak Quercus robur canopies and the experiment was replicated at two sites.     

Cenchrus biflorus Roxb. (Indian sandbur), a blessing or curse in arid ecosystems: a review

Although a widely used forage plant in arid areas, Cenchrus biflorus is viewed by many scientists as an invasive weed that has a serious negative impact on agriculture and biodiversity in arid and semi‐arid environments. It has risen from insignificance as a forage and famine cereal crop to its recent status as one of the most economically destructive weeds in many regions of the world. Numerous features like high nutritional value, prolific seed production, tolerance to high temperature and prolonged drought conditions contributed greatly towards its success as a potential forage species in arid environments. But, evidence from agriculturalists shows that it is a destructive invader which disrupts cultural practices and reduces natural biodiversity. Unfortunately, limited knowledge is available about its ecology and management in natural habitats and agro‐ecosystems. In this paper, we provide a comprehensive review of its ecology, biology, agricultural impact, management and utilization. This review also provides future directions for research on C. biflorus in arid environments.     

Wildlife translocation: the conservation implications of pathogen exposure and genetic heterozygosity

Background  

A key challenge for conservation biologists is to determine the most appropriate demographic and genetic management strategies for wildlife populations threatened by disease. We explored this topic by examining whether genetic background and previous pathogen exposure influenced survival of translocated animals when captive-bred and free-ranging bighorn sheep (Ovis canadensis) were used to re-establish a population that had been extirpated in the San Andres Mountains in New Mexico, USA.     

Thirteen‐year variation in biomass allocation under climate change in an alpine Kobresia meadow,northern Qinghai–Tibetan Plateau

Alpine grassland ecosystems are thought to be the most sensitive ecosystems to climate change, yet the responses of their belowground biomass and potential climatic controls are poorly understood. Thirteen‐year (2004 ‐ 2016) time‐series of observational belowground biomass data and environmental factors were analysed in a humid alpine Kobresia meadow on the Northern Qinghai–Tibetan Plateau. Results showed that the mean air temperature increased by 0.44°C from 2004 to 2016, while annual precipitation remained relatively stable. The belowground biomass across all soil depths (0–10 cm, 10–20 cm, 20–40 cm) increased significantly, while aboveground biomass showed little change. The proportion of 0–10 cm belowground biomass decreased, whereas the other proportions both increased, which could be mostly attributed to variations in maximum air temperature. There was no significant relationship between aboveground biomass of plant functional groups and belowground biomass across all depths, indicating that the impact of maximum air temperature on belowground biomass should not be limited by aboveground biomass. The asymmetrical response of aboveground and belowground biomass under current climate fluctuations could provide new insights for the appropriate management of the alpine ecosystem.     

Livestock grazing intensity affects abundance of Common shrews (Sorex araneus) in two meadows in Denmark

Background  

Current nature conservation in semi-natural grasslands often includes grazing and hay cutting, as well as the abandonment of draining. Semi-natural grassland and in particular meadows constitute important habitat type for a large number of animal species in today's fragmented and intensively cultivated landscape of Europe. Here we focus on the population characteristics of Common shrews Sorex araneus in relation to livestock grazing intensity in two wet meadows in western Denmark.     

A tropical grass resource for pasture improvement and landscape management: Themeda triandra Forssk

Themeda triandra Forssk. is one of the most widespread grasses in the dry to mesic prairie ecosystems of Africa, Asia and Australia. It is of particular interest due to its high value as a forage species for wildlife and livestock, and its potential use in landscaping practices. In this review we have collated information from the many studies that have been devoted to this species since the 1960s to provide information about the species' distribution, taxonomy, morphology, ploidy and reproduction, and to describe its vegetation and germination and their relationship with the most important ecological aspects of its preferred habitats. Agronomic aspects are considered in detail, with particular focus on the role of T. triandra as a forage species and the relative importance of grazing, fire and rainfall regimes for its management. We also explore how this species can help with the rehabilitation of degraded areas, soil and water conservation, countering exotic species invasion and landscaping in general. We conclude with a brief discussion of the as yet unresolved taxonomic relationship between the African species T. triandra and the Australian species Themeda australis.     

Assessing meiofaunal variation among individuals utilising morphological and molecular approaches: an example using the Tardigrada

Background  

Meiofauna – multicellular animals captured between sieve size 45 μm and 1000 μm – are a fundamental component of terrestrial, and marine benthic ecosystems, forming an integral element of food webs, and playing a critical roll in nutrient recycling. Most phyla have meiofaunal representatives and studies of these taxa impact on a wide variety of sub-disciplines as well as having social and economic implications. However, studies of variation in meiofauna are presented with several important challenges. Isolating individuals from a sample substrate is a time consuming process, and identification requires increasingly scarce taxonomic expertise. Finding suitable morphological characters in many of these organisms is often difficult even for experts. Molecular markers are extremely useful for identifying variation in morphologically conserved organisms. However, for many species markers need to be developed de novo, while DNA can often only be extracted from pooled samples in order to obtain sufficient quantity and quality. Importantly, multiple independent markers are required to reconcile gene evolution with species evolution. In this primarily methodological paper we provide a proof of principle of a novel and effective protocol for the isolation of meiofauna from an environmental sample. We also go on to illustrate examples of the implications arising from subsequent screening for genetic variation at the level of the individual using ribosomal, mitochondrial and single copy nuclear markers.     

Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore

Background  

Science-based wildlife management relies on genetic information to infer population connectivity and identify conservation units. The most commonly used genetic marker for characterizing animal biodiversity and identifying maternal lineages is the mitochondrial genome. Mitochondrial genotyping figures prominently in conservation and management plans, with much of the attention focused on the non-coding displacement ("D") loop. We used massively parallel multiplexed sequencing to sequence complete mitochondrial genomes from 40 fishers, a threatened carnivore that possesses low mitogenomic diversity. This allowed us to test a key assumption of conservation genetics, specifically, that the D-loop accurately reflects genealogical relationships and variation of the larger mitochondrial genome.     

Relative effects of mammal herbivory and plant spacing on seedling recruitment following fire and mining

Background  

There is much debate concerning which ecological constraints are the most limiting factors to seedling recruitment in disturbed communities. We provide the first comparison between selective herbivory and plant competition effects among two post-mined forest ecosystems (primary succession) and one post-fire woodland ecosystem (secondary succession). Animal exclosure assessments of nine common species across eight sites were performed for comparison within three locations separated by up to 200 km. Additionally, we asked whether pre-browsed plants differed in nutrient content between or within species in the separate systems.     

Resource heterogeneity and foraging behaviour of cattle across spatial scales

Background  

Understanding the mechanisms that influence grazing selectivity in patchy environments is vital to promote sustainable production and conservation of cultivated and natural grasslands. To better understand how patch size and spatial dynamics influence selectivity in cattle, we examined grazing selectivity under 9 different treatments by offering alfalfa and fescue in patches of 3 sizes spaced with 1, 4, and 8 m between patches along an alley. We hypothesized that (1) selectivity is driven by preference for the forage species that maximizes forage intake over feeding scales ranging from single bites to patches along grazing paths, (2) that increasing patch size enhances selectivity for the preferred species, and that (3) increasing distances between patches restricts selectivity because of the aggregation of scale-specific behaviours across foraging scales.     

Flower strip networks offer promising long term effects on pollinator species richness in intensively cultivated agricultural areas

Background

Intensively cultivated agricultural landscapes often suffer from substantial pollinator losses, which may be leading to decreasing pollination services for crops and wild flowering plants. Conservation measures that are easy to implement and accepted by farmers are needed to halt a further loss of pollinators in large areas under intensive agricultural management. Here we report the results of a replicated long-term study involving networks of mostly perennial flower strips covering 10% of a conventionally managed agricultural landscape in southwestern Germany.

Results

We demonstrate the considerable success of these measures for wild bee and butterfly species richness over an observation period of 5 years. Overall species richness of bees and butterflies but also the numbers of specialist bee species clearly increased in the ecological enhancement areas as compared to the control areas without ecological enhancement measures. A three to five-fold increase in species richness was found after more than 2 years of enhancement of the areas with flower strips. Oligolectic bee species increased significantly only after the third year.

Conclusions

In our long-term field experiment we used a large variety of seed mixtures and temporal variation in seeding time, ensured continuity of the flower-strips by using perennial seed mixtures and distributed the measures over c. 10% of the landscape. This led to an increase in pollinator abundance, suggesting that these measures may be instrumental for the successful support of pollinators. These measures may ensure the availability of a network of diverse habitats and foraging resources for pollinators throughout the year, as well as nesting sites for many species. The measures are applied in-field and are suitable for application in areas under intensive agriculture. We propose that flower strip networks should be implemented much more in the upcoming CAP (common agricultural policy) reform in the European Union and promoted more by advisory services for farmers.

     

Fast and non-invasive PCR sexing of primates: apes, Old World monkeys, New World monkeys and Strepsirrhines

Background  

One of the key tools for determining the social structure of wild and endangered primates is the ability to sex DNA from small amounts of non-invasive samples that are likely to include highly degraded DNA. Traditional markers for molecular sex determination of primates are developed on the basis of the human sequence and are often non-functional in distantly related primate species. Hence, it is highly desirable to develop markers that simultaneously detect Y- and X-chromosome specific sequences and also work across many species.     

Conservation genetics of a rare Gerbil species: a comparison of the population genetic structures and demographic histories of the locally rare Pygmy Gerbil and the common Anderson's Gerbil

Background  

One of the major challenges in evolutionary biology is identifying rare species and devising management plans to protect them while also sustaining their genetic diversity. However, in attempting a broad understanding of rarity, single-species studies provide limited insights because they do not reveal whether the factors that affect rare species differ from those that affect more common species. To illustrate this important concept and to arrive at a better understanding of the form of rarity characterizing the rare Gerbillus henleyi, we explored its population genetic structure alongside that of the locally common Gerbillus andersoni allenbyi. We trapped gerbils in several locations in Israel's western and inner Negev sand dunes. We then extracted DNA from ear samples, and amplified two mitochondrial sequences: the control region (CR) and the cytochrome oxidase 2 gene (CO2).