Genetics of the timing of vegetative phase transition in a maize population

Variability for the timing of transition from juvenile to adult vegetative phases in maize (Zea mays L.) is assumed to be genetically regulated and has been associated with disease and pest tolerance. The objective of this work was to estimate the genetic variances of vegetative phase transition and its correlation with yield and its components. Full‐sib and half‐sib families were developed in a maize synthetic, following the Design I mating system. Progenies were evaluated in randomized complete block design with sets within replications in north‐western Spain for 2 years. Phase transition‐related traits showed significant additive variance, no interaction with environment and high heritability (above 65%). Correlation coefficients indicate that selection for delayed transition should not affect yield or its components. Therefore, selection for delaying phase transition could be used as a indirect selection, without expecting detrimental effects on yield.     

Genetic relatedness and the ratio of subpopulation‐common alleles are related in genomic prediction across structured subpopulations in maize

Genomic prediction (GP), which could predict the breeding value of crop plants genotyped with molecular markers, has been carried out in multiple species. Prediction accuracy (PA) of GP depends on various factors, including genetic relatedness and genetic basis. In this study, we examined the rationale for the low PA of GP when the training and validation populations were distinct using 170 temperate inbred lines and 210 tropical and subtropical inbred lines, respectively. All inbred lines were evaluated for 17 traits and genotyped with 550K high‐density markers. The results show that: (a) the influences of heritability and marker number on PA reflected variations in phenotypic variance captured by the genetic information; (b) the low PA of GP when the training and validation populations represent structured subpopulation is related to the ratio of subpopulation‐common alleles (RSCA) and the genetic relatedness between the two subpopulations; (c) RSCA and PA increased with the increase of genetic relatedness, suggesting that these three factors were related. Our findings would provide references when performing GP, and guidance when designing breeding populations.     

Heterosis performance of yield and fibre quality in F1 and F2 hybrids in upland cotton

Because of the difficulty of producing F₁ hybrid seeds by hand emasculation and pollination, wide use of heterosis in cotton production has been limited in China. The objective of this study was to evaluate the potential of F₂ hybrids for yield and fibre quality. A half diallel involving eight parents and their F₁ and F₂ hybrids was grown in replicated studies at Linqing and Nanjing in 1999 and Nanjing in 2000. Yield and fibre quality was determined for all 64 entries. Fibre quality was also determined for parents and F₁s, but only for Zhongmiansuo 28 (ZMS28), Xiangzamian 2 (XZM2) and Wanmian 13 (WM13) F₂s. These three F₂ hybrids are extensively planted in China and provide experimental controls with which to compare the performance of new hybrids. Average yield heterosis for F₁s and F₂s was 15.9 and 9.2%, respectively. Inbreeding depression for yield varied but some F₂s greatly out‐yielded the best variety. Average F₁ heterosis was 6.7, 6.2 and 2.9%, respectively for number of bolls per unit area, boll weight, and lint percentage. The average F₂ heterosis for the same traits was 4.4, 3.3 and 1.6%, respectively. F₁ heterosis for fibre traits was low. In general, parental average was a good indicator of the yield and fibre quality of F₁ hybrids. These encouraging results suggest there is sufficient heterosis for yield to use F₂s in China.     

Evaluation of F2 and F3 plants introgressed with QTLs for clubroot resistance in cabbage developed by using SCAR markers

Clubroot disease caused by Plasmodiophora brassicae is one of the major diseases of Brassica crops, often devastating to the cultivation of cruciferous crops in temperate regions. In a previous study (Moriguchi et al. 1999) identified three major quantitative trait loci (QTLs) for clubroot resistance, each in a separate linkage group, in a population derived from a cross between a clubroot‐susceptible inbred cabbage line, Y2A and a resistant inbred kale line, K269. In this study, the original random amplified polymorphic DNA (RAPD) and restriction fragment length polymorphism (RFLP) markers were converted into sequence‐characterized amplified region (SCAR) markers to facilitate large‐scale marker‐assisted screening of clubroot resistance in cabbage breeding. Of 15 RAPD markers closely linked to the three QTLs, nine SCARs were developed as dominant markers after cloning and sequencing. In addition, two RAPD markers were converted into co‐dominant cleaved amplified polymorphic sequence (CAPS) markers, and one RFLP marker out of three tested was converted to a dominant SCAR marker. The effect of selection for resistance by the improved markers was evaluated in progeny plants in the F2 and F3. A total of 138 F2 plants were genotyped with nine SCARs and 121 well‐distributed makers consisting of 98 RAPD, 19 RFLP, two isozymes, and two morphological markers in order to estimate the level of resistance and the proportion of undesirable alleles from the kale in non‐target areas in each of the F2 populations. An F2 plant, YK118, had kale alleles at QTL1, QTL3 and QTL9. Three F2 plants, namely, YK107, YK25 and YK51 had kale alleles at only QTL1, QTL3 and QTL9, respectively. These F2 plants were selected for their low proportion of alleles derived from kale in non‐target regions. YK118, like the resistant kale parent, expressed very high resistance to three field isolates of Plasmodiophora brassicae, whereas the mean disease index in the F2 and F3 plants carrying only single QTLs was intermediate. The QTLs showed no differential response to the isolates. These plants with improved resistance will be useful as parental inbred lines for F1 hybrids.     

A Dominant Inhibitor Gene Inhibits the Expression of Ht2 against Exserohilum turcicum Race 2 in Corn Inbred Lines Related to B14

The purpose of this study was to elucidate the genetic cause for the lack of express ion of the gene Ht2 against Exserohilum turcicum race 2 on certain genetic backgrounds related to the inbred line B14. Two such inbreds (A635Rp and B59), susceptible to this pathogen were crossed onto the inbred Oh43—-Ht2Ht2. The following generations: F₁, F₂, F₃, F₄, backcrosses to both parents, selfings of the backcrosses, in addition to the parent lines, were evaluated for Ht2 expression in this study. Plants of each generation were inoculated with E. turcicum race 2 and evaluated for the expression of the chlorotic-lesion resistance determined by the gene Ht2. In spite of the reported dominance of Ht2 on some genetic backgrounds, the F₁ generations studied here did not show Ht2 resistant lesions. The data presented herein suggest that B₁₄ and related inbred lines carry a dominant gene(I) that inhibits the expression of the Ht2 gene. Chi-square analyses of the reactions of 108 progeny families studied supported this hypothesis.     

Comparison and integration of genetic maps generated from F2 and BC1-type mapping populations in perennial ryegrass

Linkage maps of perennial ryegrass were constructed from F₂ and BC₁‐type populations using, predominantly, restriction fragment length polymorphism data based on heterologous probes used in mapping other grass species. The maps identified seven linkage groups, which covered a total of 515 cM (F₂) and 565 cM (BC₁). They were aligned using 38 loci identified in both populations (common loci) and a possible marker order for all mapped loci in either population was identified in an integrated map. The estimated recombination frequencies and map distances between adjacent common loci were compared between the two data sets and regions of heterogeneity identified. Overall, the common markers identified a map distance of 446 cM in the F₂ population and 327 cM in the BC₁ population, reflecting a higher recombination frequency in the former, although the difference was not evenly spread over the seven linkage groups.