Short-term competition between crop plants and soil microbes for inorganic N fertilizer

Agricultural systems that receive high amounts of inorganic nitrogen (N) fertilizer in the form of either ammonium (NH₄⁺), nitrate (NO₃⁻) or a combination thereof are expected to differ in soil N transformation rates and fates of NH₄⁺ and NO₃⁻. Using ¹⁵N tracer techniques this study examines how crop plants and soil microbes vary in their ability to take up and compete for fertilizer N on a short time scale (hours to days). Single plants of barley (Hordeum vulgare L. cv. Morex) were grown on two agricultural soils in microcosms which received either NH₄⁺, NO₃⁻ or NH₄NO₃. Within each fertilizer treatment traces of ¹⁵NH₄⁺ and ¹⁵NO₃⁻ were added separately. During 8 days of fertilization the fate of fertilizer ¹⁵N into plants, microbial biomass and inorganic soil N pools as well as changes in gross N transformation rates were investigated. One week after fertilization 45-80% of initially applied ¹⁵N was recovered in crop plants compared to only 1-10% in soil microbes, proving that plants were the strongest competitors for fertilizer N. In terms of N uptake soil microbes out-competed plants only during the first 4 h of N application independent of soil and fertilizer N form. Within one day microbial N uptake declined substantially, probably due to carbon limitation. In both soils, plants and soil microbes took up more NO₃⁻ than NH₄⁺ independent of initially applied N form. Surprisingly, no inhibitory effect of NH₄⁺ on the uptake and assimilation of nitrate in both, plants and microbes, was observed, probably because fast nitrification rates led to a swift depletion of the ammonium pool. Compared to plant and microbial NH₄⁺ uptake rates, gross nitrification rates were 3-75-fold higher, indicating that nitrifiers were the strongest competitors for NH₄⁺ in both soils. The rapid conversion of NH₄⁺ to NO₃⁻ and preferential use of NO₃⁻ by soil microbes suggest that in agricultural systems with high inorganic N fertilizer inputs the soil microbial community could adapt to high concentrations of NO₃⁻ and shift towards enhanced reliance on NO₃⁻ for their N supply.     

Evidence of carbon stimulated N transformations in grassland soil after slurry application

High nitrification rates which convert ammonium (NH₄⁺) to the mobile ions NO₂⁻ and NO₃⁻ are of high ecological significance because they increase the potential for N losses via leaching and denitrification. Nitrification can be performed by chemoautotrophic or heterotrophic organisms and heterotrophic nitrifiers can oxidise either mineral (NH₄⁺) or organic N. Selective nitrification inhibitors and ¹⁵N tracer studies have been used in an attempt to separate heterotrophic and autotrophic nitrification. In a laboratory study we determined the effect of cattle slurry on the oxidation of mineral NH₄⁺-N and organic-N by labelling the NH₄⁺ or NO₃⁻ pools separately or both together with ¹⁵N. The size and enrichment of the mineral N pools were determined at intervals. To calculate gross N transformation rates a ¹⁵N tracing model was developed. This model consists of the three N-pools NH₄⁺, NO₃⁻ and organic N. Sub-models for decomposition of degradable carbon in the soil and the slurry were added to the model and linked to the N transformation rates. The model was set up in the software ModelMaker which contains non-linear optimization routines to determine model parameters. The application of cattle slurry increased the rate of nitrifcation by a factor of 20 compared with the control. The size and enrichment of the mineral N pools provided evidence that nitrification was due to the conversion of NH₄⁺ to NO₃⁻ and not the conversion of organic N to NO₃⁻. There was evidence that slurry-enhanced oxidation of NH₄⁺ to NO₃⁻ was due to a combination of autotrophic and heterotrophic transformations. Slurry application increased the mineralisation rate by approximately a factor of two compared with the control and the rate of immobilisation of NH₄⁺ by approximately a factor of three.     

Soil nitrogen conservation mechanisms in a pristine south Chilean Nothofagus forest ecosystem

A ¹⁵N tracing study was carried out to identify microbial and abiotic nitrogen (N) transformations in a south Chilean Nothofagus betuloides forest soil which is characterized by low N inputs and absence of human disturbance. Gross N transformation rates were quantified with a ¹⁵N tracing model in combination with a Markov chain Monte Carlo sampling algorithm for parameter estimation. The ¹⁵N tracing model included five different N pools (ammonium (NH₄⁺), nitrate (NO₃⁻), labile (N_lab) and recalcitrant (N_rec) soil organic matter and adsorbed NH₄⁺), and ten gross N transformation rates. The N dynamics in the N. betuloides ecosystem are characterized by low net but high gross mineralization rates. Mineralization in this soil was dominated by turnover of N_lab, while immobilization of NH₄⁺ predominantly entered the N_rec pool. A fast exchange between the NH₄⁺ and the adsorbed NH₄⁺ pool was observed, possibly via physical adsorption on and release from clay lattices, providing an effective buffer for NH₄⁺. Moreover, high NH₄⁺ immobilization rates into the N_rec pool ensure a sustained ecosystem productivity. Nitrate, the most mobile form of N in the system, is characterized by a slow turnover and was produced in roughly equal amounts from NH₄⁺ oxidation and organic N oxidation. More than 86% of the NO₃⁻ produced was immediately consumed again. This study showed for the first time that dissimilatory nitrate reduction to ammonium (DNRA) was almost exclusively (>99%) responsible for NO₃⁻ consumption. DNRA rather than NO₃⁻ immobilization ensures that NO₃⁻ is transformed into another available N form. DNRA may therefore be a widespread N retention mechanism in ecosystems that are N-limited and receive high rainfalls.     

Potential importance of bacteria and fungi in nitrate assimilation in soil

Soil microorganisms can use a wide range of N compounds but are thought to prefer NH₄⁺. Nevertheless, ¹⁵N isotope dilution studies have shown that microbial immobilization of NO₃⁻ can be an important process in many soils, particularly relatively undisturbed soils. Our objective was to develop a method for measuring NO₃⁻ immobilization potential so that the relative contributions of bacteria and fungi could be determined. We modified and optimized a soil slurry method that included amendments of KNO₃, glucose, and methionine sulfoximine (an inhibitor of N assimilation) in the presence of two protein synthesis inhibitors: chloramphenicol, which inhibits bacteria, or cycloheximide, which inhibits fungi. By adding ¹⁵N-labeled KNO₃, we were able to measure gross rates of NO₃⁻ production (i.e., gross nitrification) and consumption (i.e., gross NO₃⁻ immobilization). We found that bacteria, not fungi, had the greatest potential for assimilating, or immobilizing, NO₃⁻ in these soils. This is consistent with their growth habit and distribution in the heterogeneous soil matrix.     

Temperature sensitivity of mineral N transformation rates, and heterotrophic nitrification: possible factors controlling the post-disturbance mineral N flush in forest floors

A major forest disturbance such as clearcutting may bring on a flush of mineral N in organic forest floor horizons, but the magnitude of this flush can vary markedly from one ecosystem to another. For example, it was previously established that clearcutting in a high elevation Engelmann spruce-subalpine fir (ESSF) ecosystem results in significantly higher NH₄⁺ and NO₃⁻ concentrations, whereas clearcutting in an old-growth coastal western hemlock (CWH) ecosystem has little effect on mineral N dynamics. We hypothesized that the higher mineral N flush observed in the ESSF ecosystem is due to a greater temperature sensitivity of mineral N transformation rates, and to a lower proportion of heterotrophic nitrifiers, compared to the CWH ecosystem. To test these two hypotheses, we sampled forest floors several times over the growing season from clearcut and old-growth plots in both ecosystems, and measured gross mineral N transformation rates at field temperatures and at 10 °C above field temperatures, as well as with and without acetylene to inhibit autotrophic nitrifiers. Gross NH₄⁺ transformations rates ranged between 20 and 120 μg N (g forest floor)⁻¹ day⁻¹ at the ESSF site, and between 15 and 40 μg N (g forest floor)⁻¹ day⁻¹ at the CWH site. Higher temperature increased gross NH₄⁺ transformation rates in forest floor samples at both sites, but the average Q₁₀ value was higher at the ESSF site (3.15) than at the CWH site (1.25). Temperature sensitivity at the ESSF site was greater in clearcut plots (Q₁₀=4.31) than in old-growth plots (Q₁₀=1.98). Gross NO₃⁻ transformation rates ranged between 10 and 32 μg N (g forest floor)⁻¹ day⁻¹ at the ESSF site, and between 10 and 24 μg N (g forest floor)⁻¹ day⁻¹ at the CWH site, but there were no significant effects of temperature or clearcutting on gross NO₃⁻ transformation rates at either site. Likewise, there were no significant differences in the proportion of heterotrophic nitrifiers between sites. Overall, our results support the view that the temperature sensitivity of microbial processes may explain the magnitude of the NH₄⁺ flush in some coniferous ecosystems, but we lack the evidence relating the magnitude of the NO₃⁻ flush to the proportion of heterotrophic nitrifiers.     

Pathways and dynamics of NO3 and NH4 applied in a mountain Picea abies forest and in a nearby meadow in central Switzerland

To evaluate the pathways and dynamics of inorganic nitrogen (N) deposition in previously N-limited ecosystems, field additions of ¹⁵N tracers were conducted in two mountain ecosystems, a forest dominated by Norway spruce (Picea abies) and a nearby meadow, at the Alptal research site in central Switzerland. This site is moderately impacted by N from agricultural and combustion sources, with a bulk atmospheric deposition of 12 kg N ha⁻¹ y⁻¹ equally divided between NH₄⁺ and NO₃⁻. Pulses of ¹⁵NH₄⁺ and ¹⁵NO₃⁻ were applied separately as tracers on plots of 2.25 m². Several ecosystem pools were sampled at short to longer-term intervals (from a few hours to 1 year), above and belowground biomass (excluding trees), litter layer, soil LF horizon (approx. 5-0 cm), A horizon (approx. 0-5 cm) and gleyic B horizon (5-20 cm). Furthermore, extractable inorganic N, and microbial N pools were analysed in the LF and A horizons. Tracer recovery patterns were quite similar in both ecosystems, with most of the tracer retained in the soil pool. At the short-term (up to 1 week), up to 16% of both tracers remained extractable or entered the microbial biomass. However, up to 30% of the added ¹⁵NO₃⁻ was immobilised just after 1 h, and probably chemically bound to soil organic matter. 16% of the NH₄⁺ tracer was also immobilised within hours, but it is not clear how much was bound to soil organic matter or fixed between layers of illite-type clay. While the extractable and microbial pools lost ¹⁵N over time, a long-term increase in ¹⁵N was measured in the roots. Otherwise, differences in recovery a few hours after labelling and 1 year later were surprisingly small. Overall, more NO₃⁻ tracer than NH₄⁺ tracer was recovered in the soil. This was due to a strong aboveground uptake of the deposited NH₄⁺ by the ground vegetation, especially by mosses.     

A method to assess whether ‘preferential use’ occurs after N ammonium addition; implication for the N isotope dilution technique

The robustness of the assumption of equilibrium between native and added N during ¹⁵N isotope dilution has recently been questioned by Watson et al. (Soil Biol Biochem 32 (2000) 2019-2030). We re-analyzed their raw data using equations that consider the added and native NH₄⁺ and NO₃⁻ pools as separate state variables. Gross mineralization rates and first-order rate constants for NH₄⁺ and NO₃⁻ consumption were obtained by combining analytical integration of the differential equations with a non-linear fitting procedure. The first-order rate constants for NH₄⁺ consumption and NO₃⁻ immobilization for the added NH₄⁺ and NO₃⁻ pool were used to estimate gross mineralization rates and first-order rate constants for nitrification of native NH₄⁺. The latter were 2-4 times lower than the first-order rate constants derived from the added N pool. This discrepancy between first-order rate constants for nitrification implies that one or more process rates estimated for the added N pools cannot be applied to the native N pools. Preferential use of the added N resulted in an overestimation of the gross mineralization by 1.5-2.5-fold, emphasizing the need for critical evaluation of the assumption of equilibrium before gross mineralization rates are calculated.     

好氧条件下两种水稻土的氮素总转化速率比较

Although to date individual gross N transformations could be quantified by ~(15)N tracing method and models,studies are still limited in paddy soil.An incubation experiment was conducted using topsoil(0-20 cm) and subsoil(20-60 cm) of two paddy soils,alkaline and clay(AC) soil and neutral and silt loam(NSL) soil,to investigate gross N transformation rates.Soil samples were labeled with either ~(15)NH4_NO_3 or NH_4~(15)NO_3,and then incubated at 25 °C for 168 h at 60%water-holding capacity.The gross N mineralization(recalcitrant and labile organic N mineralization) rates in AC soil were 1.6 to 3.3 times higher than that in NSL soil,and the gross N nitrification(autotrophic and heterotrophic nitrification) rates in AC soil were 2.4 to 4.4 times higher than those in NSL soil.Although gross NO_3~- consumption(i.e.,NO_3~- immobilization and dissimilatory NO_3~- reduction to NH_4~+ rates increased with increasing gross nitrification rates,the measured net nitrification rate in AC soil was approximately 2.0 to 5.1 times higher than that in NSL soil.These showed that high NO_3~- production capacity of alkaline paddy soil should be a cause for concern because an accumulation of NO_3~- can increase the risk of NO_3~- loss through leaching and denitrification.     

Ammonium immobilisation during chloroform fumigation

The assumption in using the chloroform fumigation technique for microbial biomass determination is that microbes are killed or at least inactivated by the treatment. Problems associated with transformations of the N released on or during fumigation have so far only been associated with the fumigation-incubation method. A laboratory and a field study were carried out to investigate the possible N transformations during biomass determination by the fumigation-extraction method. Labelled NH₄NO₃ (either the NO₃⁻, NH₄⁺ or both pools were ¹⁵N enriched) was applied to the soil and biomass determinations made at intervals subsequently. The size and enrichment of the ammonium (NH₄⁺), and nitrate (NO₃⁻) pools were determined before and after chloroform fumigation. The ¹⁵N enrichment of the NH₄⁺ pool after fumigation could only be explained if immobilisation of ammonium occurred at some time during the 24 h fumigation period. The extent of this immobilisation was calculated. In addition, there was evidence that nitrification occurred during the fumigation procedure at the start of the laboratory study and throughout the field study. The laboratory and field study differed mainly in the dynamics related to NO₃⁻ uptake and release. There was evidence for uptake of NO₃⁻ by the microbial biomass with and without utilization. We conclude that the ¹⁵N enrichment in the microbial biomass cannot be accurately determined when N transformations and release of non-utilized N occurs during fumigation. The possible immobilisation of mineral N during fumigation will affect the magnitude of the factor used to convert measured microbial biomass N to actual microbial biomass N in soil.     

Bacterial and fungal contributions to soil nitrogen cycling under Douglas fir and red alder at two sites in Oregon

A study was conducted at two experimental tree plantations in the Pacific Northwest to assess the roles of bacteria and fungi in nitrogen (N) cycling. Soils from red alder (Alnus rubra) and Douglas-fir (Pseudotsuga menziesii) plots in low- (H.J. Andrews) and high- (Cascade Head) productivity stands were sampled in 2005 and 2006. Fungal:bacterial ratios were determined using phospholipid fatty acid (PLFA) profiles and quantitative (Q)-PCR. Ratios from these two molecular methods were highly correlated and showed that microbial biomass varied significantly between the two experimental sites and to a lesser extent between tree types with fungal:bacterial biomass ratios lower in more N-rich plots. ¹⁵N isotope dilution experiments, with ammonium (NH₄⁺) and nitrate (NO₃^?), were paired with antibiotics that blocked bacterial (bronopol) and fungal (cycloheximide) protein synthesis. This modified isotope dilution technique was used to determine the relative contribution of bacteria and fungi to net N mineralization and gross rates of ammonification and nitrification. When bacterial protein synthesis was blocked NH₄⁺ consumption and nitrification rates decreased in all treatments except for NH₄⁺ consumption in the Douglas-fir plots at H.J. Andrews, suggesting that prokaryotic nitrifiers are a major sink for mineral NH₄⁺ in forest soils with higher N availability. Cycloheximide consistently increased NH₄⁺ consumption, however the trend was not statistically significant. Both antibiotics additions also significantly increased gross ammonification, which may have been due to continued activity of extra- and intracellular enzymes involved in producing NH₄⁺ combined with the inhibition of NH₄⁺ assimilation into proteins. The implication of this result is that microorganisms are likely a major sink for soil dissolved organic N (DON) in soils.     

Effect of elevated CO2 on soil N dynamics in a temperate grassland soil

The response of terrestrial ecosystems to elevated atmospheric CO₂ is related to the availability of other nutrients and in particular to nitrogen (N). Here we present results on soil N transformation dynamics from a N-limited temperate grassland that had been under Free Air CO₂ Enrichment (FACE) for six years. A ¹⁵N labelling laboratory study (i.e. in absence of plant N uptake) was carried out to identify the effect of elevated CO₂ on gross soil N transformations. The simultaneous gross N transformation rates in the soil were analyzed with a ¹⁵N tracing model which considered mineralization of two soil organic matter (SOM) pools, included nitrification from NH₄⁺ and from organic-N to NO₃⁻ and analysed the rate of dissimilatory NO₃⁻ reduction to NH₄⁺ (DNRA). Results indicate that the mineralization of labile organic-N became more important under elevated CO₂. At the same time the gross rate of NH₄⁺ immobilization increased by 20%, while NH₄⁺ oxidation to NO₃⁻ was reduced by 25% under elevated CO₂. The NO₃⁻ dynamics under elevated CO₂ were characterized by a 52% increase in NO₃⁻ immobilization and a 141% increase in the DNRA rate, while NO₃⁻ production via heterotrophic nitrification was reduced to almost zero. The increased turnover of the NH₄⁺ pool, combined with the increased DNRA rate provided an indication that the available N in the grassland soil may gradually shift towards NH₄⁺ under elevated CO₂. The advantage of such a shift is that NH₄⁺ is less prone to N losses, which may increase the N retention and N use efficiency in the grassland ecosystem under elevated CO₂.     

Effects of repeated fertilizer and cattle slurry applications over 38 years on N dynamics in a temperate grassland soil

The effects of repeated synthetic fertilizer or cattle slurry applications at annual rates of 50, 100 or 200 m³ ha⁻¹ yr⁻¹ over a 38 year period were investigated with respect to herbage yield, N uptake and gross soil N dynamics at a permanent grassland site. While synthetic fertilizer had a sustained and constant effect on herbage yield and N uptake, increasing cattle slurry application rates increased the herbage yield and N uptake linearly over the entire observation period. Cattle slurry applications, two and four times the recommended rate (50 m³ ha⁻¹ yr⁻¹, 170 kg N ha⁻¹), increased N uptake by 46 and 78%, respectively after 38 years. To explain the long-term effect, a ¹⁵N tracing study was carried out to identify the potential change in N dynamics under the various treatments. The analysis model evaluated process-specific rates, such as mineralization, from two organic-N pools, as well as nitrification from NH₄⁺ and organic-N oxidation. Total mineralization was similar in all treatments. However, while in an unfertilized control treatment more than 90% of NH₄⁺ production was related to mineralization of recalcitrant organic-N, a shift occurred toward a predominance of mineralization from labile organic-N in the cattle slurry treatments and this proportion increased with the increase in slurry application rate. Furthermore, the oxidation of recalcitrant organic-N shifted from a predominant NH₄⁺ production in the control treatment, toward a predominant NO₃⁻ production (heterotrophic nitrification) in the cattle slurry treatments. The concomitant increase in heterotrophic nitrification and NH₄⁺ oxidation with increasing cattle slurry application rate was mainly responsible for the increase in net NO₃⁻ production rate. Thus the increase in N uptake and herbage yield on the cattle slurry treatments could be related to NO₃⁻ rather than NH₄⁺ production. The ¹⁵N tracing study was successful in revealing process-specific changes in the N cycle in relationship to long-term repeated amendments.     

Role of dissolved organic nitrogen (DON) in soil N cycling in grassland soils

Dissolved organic nitrogen (DON) represents a significant pool of soluble N in many soils and freshwaters. Further, the low molecular weight (LMW) component of DON represents an important source of N for microorganisms and can also be utilized directly by some plants. Our purpose was to determine which of the pathways in the decomposition and subsequent ammonification and nitrification of organic N represented a significant block in soil N supply in three agricultural grassland soils. The results indicate that the conversion of insoluble organic N to LMW-DON and not LMW-DON to NH₄⁺ or NH₄⁺ to NO₃⁻ represents a major constraint to N supply. We hypothesize that there are two distinct DON pools in soil. The first pool comprises mainly free amino acids and proteins and is turned over very rapidly by the microbial community, so it does not accumulate in soil. The second pool is a high molecular weight pool rich in humic substances, which turns over slowly and represents the major DON loss to freshwaters. The results also suggest that in NO₃⁻ rich soils the uptake of LMW-DON by soil microorganisms may primarily provide them with C to fuel respiration, rather than to satisfy their internal N demand.     

Dynamics of carbon and nitrogen in an extreme alkaline saline soil: A review

The soil of the former lake Texcoco is an ‘extreme’ alkaline saline soil with pH > 10 and electrolytic conductivity (EC) > 150 dS m⁻¹. These conditions have created a unique environment. Application of wastewater sludge to Texcoco soil showed that large amounts of NH₄⁺ were immobilized, NO₃⁻ was reduced aerobically, NO₂⁻ was formed and the mineralization of the organic material in the sludge was inhibited. A series of experiments were initiated to study the processes that inhibited the decomposition of organic material and affected the dynamics of mineral N. The large EC and pH inhibited the decomposition of easily decomposable organic material such as glucose and maize, although cellulolytic activity was observed in soil with pH 9.8 and EC 32.7 dS m⁻¹. The high soil pH favoured NH₃ volatilization of approximately 50 mg N kg⁻¹ soil within a day and a similar amount could be fixed on the soil matrix due to the dispersed minerals and their volcanic origin. Soil microorganisms immobilized large amounts of NH₄⁺ within a day when glucose was added to soil in excess of what was required for metabolic activity. Removal of NO₃⁻ from soil amended with glucose was not inhibited by 100% O₂ and NH₄⁺ indicating that the contribution of denitrification and assimilatory reduction to the reduction of NO₃⁻ was minimal while the formation of NO₂⁻ was not inhibited by 0.1% acetylene, known to inhibit nitrification. Additionally, the reduction of NO₃⁻ in the glucose-amended alkaline saline Texcoco soil was followed by an increase in the amount of NH₄⁺, which could not be due to denitrification. It was concluded that the reduction of NO₃⁻ and the formation of NO₂⁻ and NH₄⁺ in the glucose-amended soil was a result of aerobic NO₃⁻ reduction. A phylogenetic analysis of the archaeal community in the soil of the former lake Texcoco showed that some of the clones identified were capable of reducing NO₃⁻ aerobically to NO₂⁻ when glucose was added. A study of the diversity of the bacterial dissimilatory and respiratory nitrate-reducing communities indicated that bacteria could have contributed to the process.     

Comparison of NH4 pool dilution techniques to measure gross N fluxes in a coarse textured soil

We compared gross N fluxes by ¹⁵N pool dilution in a coarse-textured agricultural soil when ¹⁵N was applied to the soil NH₄⁺ pool by either: (i) mixing a ¹⁵NH₄NO₃ solution into disturbed soil or (ii) injection of ¹⁵NH₃ gas into intact soil cores. The two techniques produced similar results for gross N mineralization rates indicating that NH₄⁺ production in soil was not altered by soil disturbance, method of application (gas vs. solution), or amount of N applied. This was not the case for immobilization rates, which were twofold higher when ¹⁵N label was applied to the soil NH₄⁺ pool with the mixing technique compared to the injection technique. This was attributed to the fact that more NH₄⁺ was applied with the mixing technique. Estimates of gross nitrification were accompanied by large error terms meaning differences between ¹⁵N labeling methods could not be accurately assessed for this process rate.     

A N tracing model to analyse N transformations in old grassland soil

A new ¹⁵N tracing model was developed to analyse nitrogen (N) transformations in old grassland soil. There was a need to develop a new model because existing models such as FLUAZ were not able to simulate the observed N dynamics. The new features of the model are: (a) simulation of heterotrophic nitrification, (b) simulation of dissimilatory nitrate (NO₃⁻) reduction to ammonium (NH₄⁺) (DNRA), (c) release of adsorbed or stored fertiliser N into the available mineral N pools and (d) immobilisation of NH₄⁺ and NO₃⁻ into two separate organic N pools with different re-mineralisation characteristics. The tracing model contains six N pools and nine simultaneous N transformations either at zero- or first-order kinetics. The model is set up in the modelling software ModelMaker which contains non-linear optimisation routines based on the Marquardt-Levenberg algorithm. The model is able to simulate data obtained from triple labelling studies where either the NH₄⁺, the NO₃⁻ or both pools were labelled with ¹⁵N. The flexible modelling environment allows the user to develop the model further.     

The contribution of soil organic matter fractions to carbon and nitrogen mineralization and microbial community size and structure

The aims of this study were to: (i) assess the impact of hay and fertilizer application on organic matter (OM) fractions (dissolved organic matter (DOM), light fraction organic matter (LFOM, <1.0 g cm⁻³), heavy fraction OM (HFOM, <1.7 g cm⁻³)), carbon (C) and nitrogen (N) cycling processes and microbial community size and structure, and (ii) quantify the role of OM fractions to C and N cycling. Soil was collected in 2001 from a field experiment to which grass hay (1996) and/or fertilizer (1995 and 1999) had previously been applied. DOM-C (P<0.05) and DOM-N (P=0.07) were significantly higher in control and fertilized soil than hay and hay+fertilized soil. LFOM and HFOM C and N contents and C/N ratios were significantly (P<0.05) higher in hay+fertilized and hay amended soil than in control and fertilized soil. Potentially mineralizable-N (PMN), microbial biomass-C (MB-C), microbial biomass-N (MB-N) and microbial respiration (CO₂) were not affected by fertilizer and/or hay application. Gross N mineralization (Gross Min) and gross nitrification (Gross Nit) rates were significantly (P<0.05) higher in fertilized, hay, hay+fertilized soil than control soil. However, there was no significant difference between treatments in gross N immobilization rates. Results reported here highlight the importance of a labile fraction of the DOM pool to N and C cycling as its removal significantly (P<0.05) reduced PMN, MB-N, Gross Min and Gross Nit compared with whole soil in most or all treatments. In soil where DOM+LFOM were removed PMN was significantly (P<0.05) lower, but MB-C, Gross Min and Gross Nit was significantly (P<0.05) higher than in DOM removed soil. This suggests that LFOM plays an important role as a sink for mineral-N. Total soil phospholipid fatty acid (PLFA) concentration was significantly (P<0.05) higher in hay amended than control, fertilized and hay+fertilized soil. Principal components analysis was able to clearly discriminate between control, fertilized, hay+fertilized and hay amended soil. Soil amended with hay or fertilizer had a microbial community structure which differed from that of the control or hay+fertilized soils. Redundancy analysis with Monte Carlo permutation tests revealed that PLFA profiles were strongly correlated to differences in Gross Min, Gross Nit, MB-N, MB-C, MB-C/N ratio, total soil C and total soil C/N ratio. The results of this research suggest that changes in microbial structure are related to aspects of soil C and N pools and cycling.     

Gross nitrogen mineralization and nitrification rates and their relationships to enzyme activities and the soil microbial biomass in soils treated with dairy shed effluent and ammonium fertilizer at different water potentials

 Gross N mineralization and nitrification rates and their relationships to microbial biomass C and N and enzyme (protease, deaminase and urease) activities were determined in soils treated with dairy shed effluent (DSE) or NH₄ ⁺ fertilizer (NH₄Cl) at a rate equivalent to 200 kg N ha^–1 at three water potentials (0, –10 and –80 kPa) at 20  °C using a closed incubation technique. After 8, 16, 30, 45, 60 and 90 days of incubation, sub-samples of soil were removed to determine gross N mineralization and nitrification rates, enzyme activities, microbial biomass C and N, and NH₄ ⁺ and NO₃ ^– concentrations. The addition of DSE to the soil resulted in significantly higher gross N mineralization rates (7.0–1.7 μg N g^–1 soil day^–1) than in the control (3.8–1.2 μg N g^–1 soil day^–1), particularly during the first 16 days of incubation. This increase in gross mineralization rate occurred because of the presence of readily mineralizable organic substrates with low C : N ratios, and stimulated soil microbial and enzymatic activities by the organic C and nutrients in the DSE. The addition of NH₄Cl did not increase the gross N mineralization rate, probably because of the lack of readily available organic C and/or a possible adverse effect of the high NH₄ ⁺ concentration on microbial activity. However, nitrification rates were highest in the NH₄Cl-treated soil, followed by DSE-treated soil and then the control. Soil microbial biomass, protease, deaminase and urease activities were significantly increased immediately after the addition of DSE and then declined gradually with time. The increased soil microbial biomass was probably due to the increased available C substrate and nutrients stimulating soil microbial growth, and this in turn resulted in higher enzyme activities. NH₄Cl had a minimal impact on the soil microbial biomass and enzyme activities, possibly because of the lack of readily available C substrates. The optimum soil water potential for gross N mineralization and nitrification rates, microbial and enzyme activities was –10 kPa compared with –80 kPa and 0 kPa. Gross N mineralization rates were positively correlated with soil microbial biomass N and protease and urease activities in the DSE-treated soil, but no such correlations were found in the NH₄Cl-treated soil. The enzyme activities were also positively correlated with each other and with soil microbial biomass C and N. The forms of N and the different water potentials had a significant effect on the correlation coefficients. Stepwise regression analysis showed that protease was the variable that most frequently accounted for the variations of gross N mineralization rate when included in the equation, and has the potential to be used as one of the predictors for N mineralization. Received: 10 March 1998     

Microbial populations immobilizing NH4-N and NO3-N differ in their sensitivity to sodium chloride salinity in soil

An incubation experiment was conducted to study the response to sodium chloride (NaCl) salinity of microbial population immobilizing NH₄⁺- and NO₃⁻-N using glucose as an easily oxidizable C source. Immobilization of NH₄⁺-N was faster than that of NO₃⁻-N and was complete within 12 h of -incubation. Presence of NaCl retarded the process of N immobilization; that of NO₃⁻-N being more affected. Remineralization of immobilized N started within 48 h in case of both NH₄⁺- and NO₃⁻-N and was faster for the latter. Both remineralization and nitrification were significantly delayed in the presence of NaCl; inhibition being more at 4000 mg NaCl kg⁻¹ soil. The inhibitory effect of NaCl on remineralization of N was relatively more for NH₄⁺-treated soil. The results of the study suggested a higher sensitivity to NaCl of microorganisms assimilating NO₃⁻. However, remineralization of N from NO₃⁻-assimilating microbial population was less affected by NaCl salinity compared to NH₄⁺-assimilating population.     

Effects of decreasing water potential on gross ammonification and nitrification in an acid coniferous forest soil

Changes in the soil water regime, predicted as a consequence of global climate change, might influence the N cycle in temperate forest soils. We investigated the effect of decreasing soil water potentials on gross ammonification and nitrification in different soil horizons of a Norway spruce forest and tested the hypotheses that i) gross rates are more sensitive to desiccation in the Oa and EA horizon as compared to the uppermost Oi/Oe horizon and ii) that gross nitrification is more sensitive than gross ammonification. Soil samples were adjusted by air drying to water potentials from about field capacity to around −1.0 MPa, a range that is often observed under field conditions at our site. Gross rates were measured using the ¹⁵N pool dilution technique. To ensure that the addition of solute label to dry soils and the local rewetting does not affect the results by re-mineralization or preferential consumption of ¹⁵N, we compared different extraction and incubation times.T₀ times ranging from 10 to 300 min and incubation times of 48 h and 72 h did not influence the rates of gross ammonification and nitrification. Even small changes of water potential decreased gross ammonification and nitrification in the O horizon. In the EA horizon, gross nitrification was below detection limit and the response of the generally low rates of gross ammonification to decreasing water potentials was minor. In the Oi/Oe horizon gross ammonification and nitrification decreased from 37.5 to 18.3 mg N kg⁻¹ soil d⁻¹ and from 15.4 to 5.6 mg N kg⁻¹ soil d⁻¹ when the water potential decreased from field capacity to −0.8 MPa. In the Oa horizon gross ammonification decreased from 7.4 to 4.0 mg N kg⁻¹ soil d⁻¹ when the water potential reached −0.6 MPa. At such water potential nitrification almost ceased, while in the Oi/Oe horizon nitrification continued at a rather high level. Hence, only in the Oa horizon nitrification was more sensitive to desiccation than ammonification. Extended drought periods that might result from climate change will cause a reduction in gross N turnover rates in forest soils even at moderate levels of soil desiccation.