Fate and dispersal of recombinant bacteria in a soil microcosm containing the earthworm Lumbricus terrestris

Summary A model ecosystem was designed containing Lumbricus terrestris in soil. The microcosm is suitable for assessing the dispersal and survival of genetically engineered microorganisms. After the inoculation of genetically engineered microorganisms their number in the worm excretions decreased continuously to reach the level of the detection limit within 50 days.     

The role of the earthworm Lumbricus terrestris in the transport of bacterial inocula through soil

Two laboratory experiments were used to investigate the effect of the earthworm Lumbricus terrestris on transport of genetically marked Pseudomonas fluorescens inocula through soil microcosms. The microcosms comprised cylindrical cores of repacked soil with or without earthworms. Late log-phase cells of P. fluorescens, chromosomally marked with lux genes encoding bioluminescence, were applied to the surface of soil cores as inoculated filter paper discs. In one experiment, 5 and 10 days after inoculation, cores were destructively harvested to determine concentrations of marked pseudomonads with depth relative to the initial inoculum applied. Transport of the bacteria occurred only in the presence of earthworms. In a second experiment cores were subjected to simulated rainfall events 18 h after inoculation with lux-marked bacteria at 3-day intervals over a 24-day period. Resulting leachates were analysed for the appearance of the marked bacteria, and after 28 days cores were destructively harvested. Although some marked cells (less than 0.1% of the inoculum applied) were leached through soil in percolating water, particularly in the presence of earthworms, the most important effect of earthworms on cell transport was through burial of inoculated litter rather than an increase in bypass flow due to earthworm channels.     

Survival and plasmid stability of rhizobia introduced into a contaminated soil

The behaviour of Rhizobium strains introduced separately into soil from a contaminated site with high concentrations of heavy metals (mainly Zn and Hg), and the role of plasmids in the ecology of these rhizobia strains were studied. Six Rhizobium leguminosarum biovar trifolii strains, from different sources and with different plasmid contents, were selected. Two of them were isolated from nodules of subterranean clover plants (Trifolium subterraneum) grown in the contaminated soil and four were from an uncontaminated soil. After inoculation with approximately 10⁷ cells g⁻¹ soil, of each strain, survival and plasmid stability were assessed over a period of 12-18 months. Differences in survival of Rhizobium strains were only detected more than 12 months after inoculation. After 18 months it was clear that survival in contaminated soil was greatest in the two strains originally isolated from that contaminated soil, and also by two of the strains originally isolated from uncontaminated soil. The latter two strains were also the only ones that showed changes in their plasmid profiles. The remaining isolates had the lowest populations, and their plasmid profiles were unchanged and similar to the parent strains.     

Influence of clay content and acidity of soil on development of the earthworm <Emphasis Type="Italic">Lumbricus rubellus</Emphasis> and its population level consequences

In this paper we report on the influence of clay content and acidity of soil on growth and reproduction of the epigeic earthworm species Lumbricus rubellus (Hoffm.), which is common in most temperate soils and abundant in grasslands. Growth, cocoon production and survival of L. rubellus were tested in 12 Dutch soils which differed in soil properties. A matrix model was used to assess the population-level consequences of changes in growth and reproduction. Soil acidity had a strong negative effect on earthworm survival, and the maturation weight decreased with clay content. Individual weight gain in L. rubellus decreased with both acidity and clay content. The acidity of soils had a larger influence on population growth rate than the clay content. The acidity of the soil also changed the population composition towards younger age classes, whereas in soils rich in clay, the population composition did not change. The average individual weight of L. rubellus in clayey soils, however, was lower compared with that in soils low in clay, a result that agrees with literature data.     

Changes in potassium availability and other soil properties due to soil ingestion by earthworms

An incubation experiment was conducted to study the changes that occur in potassium availability and other soil properties with ingestion of soil by earthworms. Two soils were used. Raumai soil with high non-exchangeable K and Milson soil with low non-exchangeable K were incubated with two species of earthworm, Aporrectodea caliginosa and Lumbricus rubellus, for 8 weeks. The casts and soil samples were analysed for exchangeable K, Ca, Mg, Na, and H, pH, organic C, and texture. The results indicated that in Raumai soil, the exchangeable K levels of the casts of both earthworm species were significantly higher than for the control soil, the effect being more marked for L. rubellus than for A. caliginosa. In Milson soil, the exchangeable K levels were significantly lower in the casts of both types of earthworm than in the control soil. The nitric acid-extractable K of the soil and casts was not markedly different for either soil type, but available non-exchangeable K values were significantly higher for the casts of L. rubellus from Milson soil than for the noningested Milson soil. In Raumai soil, the exchangeable Ca was higher in the casts of L. rubellus, exchangeable Mg and H were reduced, and exchangeable Na did not change markedly in the cast compared to the control soil. For Milson soil, the casts contained lower exchangeable Ca and H but higher Na and Mg than the control. The casts of both species of earthworm had significantly higher pH values for both soil types. There was no marked difference in the organic C content of the control soil and cast samples for Milson but a reduction in the casts of A. caliginosa for the Raumai soil. Finer fractions increased in the casts of both earthworm species in both soil types.     

Effects of heavy metals on the litter consumption by the earthworm Lumbricus rubellus in field soils

Aim of this study was to determine effects of heavy metals on litter consumption by the earthworm Lumbricus rubellus in National Park the “Brabantsche Biesbosch”, the Netherlands. Adult L. rubellus were collected from 12 polluted and from one unpolluted field site. Earthworms collected at the unpolluted site were kept in their native soil and in soil from each of the 12 Biesbosch sites. Earthworms collected in the Biesbosch were kept in their native soils. Non-polluted poplar (Populus sp.) litter was offered as a food source and litter consumption and earthworm biomass were determined after 54 days. Cd, Cu and Zn concentrations were determined in soil, pore water and 0.01 M CaCl₂ extracts of the soil and in earthworms. In spite of low available metal concentrations in the polluted soils, Cd, Cu and Zn concentrations in L. rubellus were increased. The litter consumption rate per biomass was positively related to internal Cd and Zn concentrations of earthworms collected from the Biesbosch and kept in native soil. A possible explanation is an increased demand for energy, needed for the regulation and detoxification of heavy metals. Litter consumption per biomass of earthworms from the reference site and kept in the polluted Biesbosch soils, was not related to any of the determined soil characteristics and metal concentrations.     

Effects of metal pollution on soil macroinvertebrate burrow systems

A reduction in the numbers of macroinvertebrates present in soil may have a negative effect on soil structure, infiltration rates, and gas exchanges. Soil pollution by metal is known to have a detrimental effect on soil macrofauna. The aim of the present study was to evaluate (1) direct and indirect effects of soil pollution on soil macroinvertebrate bioturbation and (2) effects of the two macroinvertebrate communities found in a polluted and a nonpolluted area (one supposed sensitive, the other tolerant to metals) on burrow systems parameters. Macroinvertebrate porosity was studied using X-ray tomography. Three-dimensional reconstructions and characterisation of the burrow system were obtained using image analysis. Results showed that metal pollution principally affected the spatial distribution of macropores (more macropores were found near the soil surface) and the shape of the burrow system (branching rate was higher in the polluted soil), whereas soil macroinvertebrate composition principally affects burrow density parameters (the number of burrows was higher for the sensitive macroinvertebrate community).     

A partial chloroform-fumigation technique to characterise the spatial location of bacteria introduced into soil

Bioluminescence-marked cells of Pseudomonas fluorescens were inoculated into soil by introduction into pores of two different size classes (< 6 and 30–60 m neck diameter). Partial chloroform fumigation resulted in a differential killing of cells depending on the placement of the inoculum within the soil pore network and on the period of fumigation. Reduced survival was associated with increasing periods (30–120 min) of fumigation, and with inoculum placement into larger rather than smaller pores. Comparison of the effects of partial fumigation on cells introduced into four soils of contrasting pore-size distribution highlighted the need to calibrate the method on the basis of air/water-filled pore space and chloroform diffusion dynamics for different soil types. It is proposed that partial fumigation facilitates spatial characterisation of the distribution of bacterial cells introduced into soils.     

Survival of inoculant Bradyrhizobium japonicum in an Andosol

The survival of an antibiotic-resistant mutant of a commercial inoculant Bradyrhizobium japonicum strain, A1017ks, was studied in a volcanic ash soil (Andosol) in comparison with a non-volcanic ash soil (Fluvisol) over a period of 84 days. In a non-sterile soil system, the population decline in the Andosol (15% or 1.2 log units) was larger than in the Fluvisol (6% or 0.54 log units). In both soils, however, the inoculant bradyrhizobium survived at fairly high population levels after the period of incubation [10⁶ and 10⁷ colony-forming units (CFU) g^-1 dry soil in the Andosol and Fluvisol, respectively]. In sterile control soil, viable bradyrhizobium cells could not be detected after 1 week of incubation in the Andosol, whereas in the Fluvisol population of introduced bradyrhizobium was maintained throughout the period of incubation. Overall changes in the population of indigenous bacteria and fungi were also monitored. However, no clear pattern of interaction between the inoculant Bradyrhizobium japonicum and the indigenous microbes could be identified. The antibiotic-resistant mutant maintained its resistance in the Fluvisol throughout the 3-month period of incubation, making it a useful model for conducting ecological studies in the soil.     

Assessment of earthworm burrowing efficiency in compacted soil with a combination of morphological and soil physical measurements

Summary Column experiments were carried out to quantify the effect of earthworms on compacted soil. The earthworms (Lumbricus terrestris) were able to burrow into soil which was artificially compacted to a pore volume as low as 40%; they may also penetrate an artificial plough pan deep in the soil. The effect of the burrowing activity of Lumbricus terrestris was quantified by measuring hydraulic conductivities and infiltration rates through the whole soil column (19 cm wide, 40 cm long). Morphological parameters, mainly the vertically projected burrow depth, were correlated with the saturated hydraulic conductivity. The amount of casts deposited by Lumbricus terrestris on the soil surface increased with the degree of soil compaction. The bulk density of casts was always less than that of the original soil.     

The effect of earthworms (Lumbricidae) on nitrogenase activity in soil

Summary Nitrogenase activity associated with earthworms, their faeces and activity in soil was measured by the acetylene reduction technique. A clear increase in nitrogenase activity was found in field-deposited casts of Aporrectodea caliginosa in comparison with surrounding soil, although potential nitrogenase activity was significantly higher in soil than in casts. Nitrogenase activity associated directly with earthworms (Lumbricus rubellus ) was detected, indicating the presence of active N₂-fixing bacteria on the body surface and/or in the gut. Laboratory experiments showed that nitrogenase activity in the casts of L. rubellus was higher than in unmodified soil, and that nitrogenase activity in soil was significantly increased by the burrowing and feeding activity of these worms. This paper discusses the possible causes of these earthworm effects on soil nitrogenase activity and some methodological problems of determining the nitrogenase activity.     

Gut load and food-retention time in the earthworms Lumbricus festivus and L. castaneus: A field study

Summary Lumbricus festivus and L. castaneus consume dung. In the field, below cow pats, their gut loads were about 0.15 and 0.14 g dry weight g^-1 ash-free dry weight of worm, respectively, but in free soil the loads were higher, about 0.21 and 0.19 g g^-1 ash-free dry weight of worm. The gut contents of dung were lighter than the total ingested material, at about 0.10 and 0.07 g dry weight g^-1 ash-free dry weight of worm, respectively. Field experiments showed that the retention time of dung ranged from >9 to 15 h for L. festivus, and from >3 to 6 h for L. castaneus. The experiments also indicated that L. festivus exploited 20- and 36-day-old dung in different ways, since the gut load was lower in those worms consuming 20-day-old dung than in those consuming 36- to 40-day-old dung. On the basis of these results the calculated consumption rate for L. festivus is 0.08 g dung day^-1 g live weight of worm^-1, and for L. castaneus 0.15 g dung day^-1, with retention times assumed to be at maximum, 15 h, for L. festivus and 6 h for L. castaneus. These calculations indicate that our field population of worms (75 g m^-2) consumes 10–15 t dung ha^-1 180 days^-1, corresponding to the amount of dung produced by 2–3 dairy cows.     

Effect of earthworms on decomposition processes in raw humus forest soil: A microcosm study

Summary The earthworms Lumbricus rubellus (Hoffmeister) and Dendrobaena octaedra (Savigny) were studied in the laboratory to determine their effects on decomposition and nutrient cycling in coniferous forest soil. CO₂ evolution was monitored, and pH, PO ₄ ^3– –P, NH ₄ ⁺ –N, NO ₃ ^– –N, total N, and total C in the leaching waters were measured. After three destructive samplings, numbers of animals, mass loss, pH, and KCl-extractable nutrients were analysed.The earthworms clearly enhanced the mass loss of the substrate, especially that of litter. L. rubellus stimulated microbial respiration by 15–18%, whereas D. octaedra stimulated it only slightly. The worms significantly raised the pH of the leaching waters and the humus; L. rubellus raised the value by 0.2–0.6 pH units and D. octaedra by 0.1–0.4 units. Both worms increased N mineralization. Although the biomass of both worms decreased during the experiment, the N released from decomposing tissues did not explain the increase in N leached in the presence of earthworms. The worms influenced the level of PO ₄ ^3– –P only slightly.     

Identification of uncultured bacteria tightly associated with the intestine of the earthworm Lumbricus rubellus (Lumbricidae; Oligochaeta)

The bacteria associated with the intestine and casts of the earthworm Lumbricus rubellus Hoffmeister, 1843, were examined by direct counts, culturability studies, 16S rRNA gene clone libraries, and fluorescent in situ hybridization (FISH). A significant fraction, 24-47%, of the total numbers of prokaryotes remaining in the intestine after casting were tightly associated with the intestinal wall. Bacterial 16S rRNA gene clone libraries constructed from washed earthworm intestinal tissue suggested that the bacterial community was dominated by a few phylotypes that were either absent from, or in low abundance, in the casts. The specific phylotypes present depended on the date of sampling and included representatives of the Acidobacteria, Firmicutes, β-Proteobacteria, and one phylogenetically deep, unclassified group. Juvenile earthworms subsequently collected contained three of the four phylotypes observed in the intestine clone libraries. The Firmicutes phylotype was examined by FISH and was found to be a short rod that represented only a small fraction of the total population of the juvenile samples. These results suggested that the microbial community tightly associated with the intestine was dominated by a small number of phylotypes and that this association was opportunistic rather than obligate.     

Survival of,and root colonization by,alginate-encapsulated Pseudomonas fluorescens cells following introduction into soil

Summary The survival of Pseudomonas fluorescens cells encapsulated in alginate beads and colonization of wheat roots was studied in soil microcosms inoculated with the cells in alginate beads of varying composition. Cells encapsulated in beads and introduced into a non-sterile loamy sand survived better than cells added directly to the same soil. A recovery/growth step for the bead-encapsulated cells was added before they were introduced into the soil, in an attempt to obtain optimal population levels in the soil. Further, bacterial populations that grew to the highest density in the beads subsequently showed the highest survival levels in soil. The addition of 3% skim milk, or 3% skim milk and 3% bentonite clay to all bead types consistently resulted in the highest survival of the encapsulated cells in soil. Root colonization by P. fluorescens was generally not impaired by the encapsulation in alginate. One week after inoculation into the soil, encapsulated cells in the various bead types were able to colonize the wheat rhizoplane at high population levels, similar to or exceeding those found when free cells were inoculated. In a second root colonization experiment the wheat rhizoplane was also efficiently colonized 7 weeks after the inoculant cells had been introduced into the soil in different bead types. In both assays, the cells encapsulated in beads amended with skim milk plus bentonite clay showed the highest root colonization rates. It is clear, therefore, that alginate-mediated establishment of inoculants can improve inoculant effectiveness.     

Leaf-litter consumption and assimilation by juveniles of Lumbricus terrestris L. (Oligochaeta,Lumbricidae) under different environmental conditions

Summary The rate of consumption of dandelion leaves per g earthworm dry weight per week was described by non-linear functions of soil temperature, soil water potential, and food availability. The optimum temperature and soil water potential for food consumption are about 22°C and-7 kPa, respectively. Zero consumption occurred at about-40 kPa. Food consumption increased with greater food availability, but only up to 1.05 (dandelion) and 1.23 (grass) g dry weight per g earthworm dry weight per week at 15°C. A general consumption function to account for all three environmental factors is given. The assimilation rate per g earthworm dry weight per week was defined as the sum of the growth rate and the maintenance rate. Maintenance was calculated according to respiratory measurements reported previously, whereas growth was measured. High temperatures and limiting environmental conditions, such as a low food availability and a low soil water potential, led to an increase in the assimilation efficiency of Lumbricus terrestris. At-7 kPa and 15°C, L. terrestris assimilated 55 and 43% of the ingested dandelion if 0.25 and 1.0 g dry weight of food was available per g earthworm dry weight per week, respectively. it is concluded that L. terrestris has a strong, direct effect on the decomposition of highly palatable plant materials.     

Burrow constructions during the development of Lumbricus badensis individuals

Summary Juveniles of the anecic earthworm species Lumbricus badensis hatch from cocoon chambers, which the adult has excavated at depths between 0.4 and 1.5 m. After hatching the young animals migrate to the soil surface through the burrow of the adult. Juveniles live epigeically in self-constructed horizontal tubes during the first growing season. After hibernating in the soil at depths between 30 and 50 cm, juveniles make U-shaped burrows in the mineral soil. Later a main tube is constructed penetrating into the soil. This tube is split into two branches forming a V near the soil surface, and resembling the burrow of the adult. The burrow of an adult earthworm may reach a depth of 2.5 m and ramifies into 5–7 outlet tubes near the soil surface. The construction of the burrows during an individual's development, together with the transition from the epigeic to the anecic way of life, shows the close relationship of the anecic Lumbricus species to epigeic types. The feeding behaviour of the adult and the construction of the humic wall confirm this close relationship.Dedicated to the late Prof. Dr. M.S. Ghilarov     

Survival and potential denitrifying activity of Azospirillum lipoferum and Bradyrhizobium japonicum inoculated into sterilized soil

Summary Potential denitrifying activity and population dynamics of Azospirillum lipoferum (137C) and Bradyrhizobium japonicum (G2sp) inoculated into a -sterilized soil were studied for a period of 3 weeks. The denitrifying enzyme potential of soil inoculated independently with each bacterial species was strongly stimulated by the presence of a plant (Zea mays L.). Simultaneous inoculation of both bacteria also produced a higher denitrifying enzyme potential than simple inoculation. Even with double inoculation, the presence of a plant did not modify the evolution of the activity. The response of the population dynamics to these treatments followed a different pattern. The population dynamics of A. lipoferum was not affected by the presence of the plant or by the presence of B. japonicum. In contrast, the presence of both a plant and of A. lipoferum seemed to promote the growth of B. japonicum.     

Influence of compost and lime on population structure and element concentrations of forest soil invertebrates

Summary We tested the effects of two organic fertilizers (composts) and lime on the soil fauna of a spruce stand. One compost was obtained from chopped wood and the other from household garbage. At the time of distribution the pH of the control plots averaged 3.2, the garbage compost had a pH of 7.5, and the wood compost of 6.2. During the experimental period the pH of the compost layers decreased. The pH of the former litter layer beneath the composts showed a steep increase after 5 months, but beneath the treatment with wood compost this effect did no persist. Liming increased the pH only slightly in the litter layer. The two types of compost, the litter layer, and lumbricids (Lumbricus rubellus) were analyzed for concentrations of essential and potentially toxic elements. The element burden was highest in the garbage compost with 7- to 11-fold concentrations of Zn, Cd, Pb, Mg, and Cu compared to the needle litter. K, Ba, and Ca were 4 times more concentrated. L. rubellus showed an increased Cu concentration after extraction from the highly contaminated sites of garbage compost. Despite the differences in Pb contamination in the needle litter and in the two compost types, all investigated individuals of L. rubellus contained similar concentrations of Pb. In contrast to Pb, Cd accumulated in this lumbricid. Seasonal fluctuations of microarthropods, their total abundance, and differences in the colonization of the compost layers were observed. Collembola abundance was significantly increased in the garbage compost plots in July 91. There were generally more Prostigmata in the control and limed plots than in the compost plots. Oribatid numbers fell under all treatments compared to the controls. Mesostigmata were identified to species level and 33 species were found in the experimental areas. Certain species, such as Arctoseius cetratus and Uropoda minima, were only found in the treated sites.     

Novel method for the study of the population dynamics of a genetically modified microorganism in the gut of the earthworm Lumbricus terrestris

Summary A laboratory microcosm study was used to investigate the survival and population dynamics of genetically modified microorganisms (GMM) in the gut of Lumbricus terrestris. Three methods of axenic earthworm production were investigated. An antibiotic mixture of streptomycin and cycloheximide was introduced either passively, mixed with sterile soil or cellulose, or actively, by teflon catheter. Worms treated by all methods lost weight but this was least for the catheter method which was also the only method to produce axenic earthworms. Axenic earthworms were used to determine the effect of competition with indigenous gut bacteria on ingested GMM. The GMM used was Pseudomonas fluorescens, strain 10586/FAC510, with chromosomally inserted Lux genes for bioluminescence, and chromosomal resistance to rifampicin. The bacteria were grown up to the mid-exponential phase before inoculation into earthworms. Bacteria in faecal material were enumerated by dilution plate counting using selective agar. The GMM were re-isolated from the casts of both antibiotic-treated and untreated earthworms. Lower concentrations of GMM and higher concentrations of indigenous bacteria in the casts of untreated compared to antibiotic-treated earthworms suggested that competition is a fundamental control on population dynamics of the introduced bacterial inocula ingested by earthworms.The catheter method, developed in this study, is proposed as a technique to contribute to the risk assessment of environmental release of GMM.