Marker assisted selection (MAS) for developing powdery mildew resistant pea cultivars

In this contribution we review the state of the art for genetic resistance to powdery mildew, caused by Erysiphe pisi, in pea (Pisum sativum L.) and potential use of marker-assisted selection (MAS) for developing disease resistant cultivars. Powdery mildew is important in many production regions worldwide and reduces yield and crop quality when present in epidemic proportions. Although genetic resistance to powdery mildew is available (er1 and er2) and has been durable since its characterization in 1969, recently a new dominant gene (Er3) has been reported in Pisum fulvum, a wild relative of pea that is different from previously reported er1 and er2. The efficacy of these genes may be at risk from the point of view of new pathotypes and pathogens. Erysiphe trifolii has been reported that was not previously known as a pathogen of pea powdery mildew. A continued search for new and diverse resistant sources remains a priority in pea breeding and special emphasis should be paid to selection of resistance that will prolong durability of existing resistance genes. Marker assisted selection is a new emerging approach for target breeding that has been intensively employed especially in cereals and has recently got popularity among legume breeders. With the advancement of genomic research, especially related to quantitative traits loci, the MAS is potentially anticipated future technique for routine plant breeding that is scarce in legumes at present. In pea, various DNA markers have been reported linked to er1, er2 and Er3 at varying distances in different mapping populations that are currently being used in breeding programs. Currently MAS of single gene is the most powerful approach and successes have been witnessed. If single marker is not close enough to the gene of interest then two flanking markers are considerably utilized to improve the correct identification that is being successfully employed in MAS for powdery mildew resistance in pea.     

Screening of pea germplasm for resistance to powdery mildew

Powdery mildew caused by Erysiphe pisi DC results heavy losses in the yield and quality of pods and seeds of pea crop. Germplasm comprising 701 accessions of garden and field pea originating from 60 countries were screened for powdery mildew resistance under natural epiphytotic conditions and 64 accessions found resistant in field screening for 2?years at one location were further screened both in field at two locations and artificially in laboratory to four isolates. The information was also obtained on the amount of genetic diversity and agronomic superiority in resistant accessions. Fifty-seven accessions showed resistant reaction for 3 consecutive years in field screening but only 14 accessions originating from 10 countries showed resistant reaction in laboratory screening against the four most prevalent isolates of E. pisi collected from different places in the area of experiment. Germplasm lines showed both complete and incomplete levels of resistance and variable reactions to different isolates. There was sufficient genetic diversity and agronomic superiority in the resistant accessions e.g. EC598655, EC598878, EC598704, IC278261, and IC218988, which may serve as useful genetic material to plant breeders for breeding pea varieties for powdery mildew resistance and high yield.     

<Emphasis Type="Italic">Er3</Emphasis> gene,conferring resistance to powdery mildew in pea,is located in pea LGIV

Three genes for resistance to Erysiphe pisi, named er1, er2 and Er3 have been described in pea so far. er1 gene is located in pea linkage group VI, while er2 gene has been mapped in LGIII. SCAR and RAPD markers tightly linked to Er3 gene have been identified, but the position of these markers in the pea genetic map was unknown. The objective of this study was to localize Er3 gene in the pea genetic map. Towards this aim, the susceptible pea cv. Messire (er3er3) and a resistant near isogenic line of Messire (cv. Eritreo, Er3Er3) were surveyed with SSRs with known position in the pea map. Three SSRs were polymorphic between “Messire” and “Eritreo” and further surveyed in two contrasting bulks formed by homozygous Er3Er3/er3er3 individuals obtained from a F₂ population derived from the cross C2 (Er3Er3)?×?Messire (er3er3). A single marker, AA349, was polymorphic between the bulks. Subsequently, other ten markers located in the surrounding of AA349 were selected and analysed in Er3Er3 and er3er3 plants. As a results, another SSR, AD61, was found to be polymorphic between Er3Er3 and er3er3 plants. Further linkage analysis confirmed that SSRs AA349 and AD61 were linked to Er3 and to the RAPD and SCAR markers previously reported to be linked to this gene. Er3 gene was located in pea LGIV at 0.39 cM downstream of marker AD61. The location of Er3 gene in the pea map is a first step toward the identification of this gene.     

豌豆品系X9002抗白粉病基因鉴定

白粉病是豌豆的主要病害之一,在全球范围内引起严重经济损失。防治豌豆白粉病最有效、经济和环境友好的方法是利用抗病品种。迄今,2个隐性抗白粉病基因er1、er2和一个显性抗白粉病基因Er3已在豌豆中被鉴定,其中er1基因在世界上被广泛应用于抗病品种培育。er1基因隶属MLO基因家族,其抗性由豌豆Ps MLO1基因座位功能丧失产生。X9002是甘肃省农业科学院培育的一个半无叶(afila)抗白粉病豌豆品系。本研究对X9002抗白粉病基因进行鉴定,开发用于抗白粉病基因选择的分子标记。遗传分析表明X9002对白粉病抗性由1个隐性单基因控制,SSR标记将该基因定位到豌豆第VI连锁群er1座位区域,标记AD60和c5DNAmet与其连锁。Ps MLO1基因序列分析发现,X9002存在一个未知大小和身份的片段插入,该类型突变也发生在含有er1-2等位基因的豌豆品种Stratagem和Franklin,表明X9002抗白粉病基因为er1-2。一个鉴定er1-2等位基因的功能标记Ps MLO1-650被开发,该标记为互引相标记,仅在感病植株中扩增,可以有效用于分子辅助选择。     

Mapping of quantitative trait loci controlling partial resistance against rust incited by <Emphasis Type="Italic">Uromyces pisi</Emphasis> (Pers.) Wint. in a <Emphasis Type="Italic">Pisum fulvum</Emphasis> L. intraspecific cross

A quantitative trait loci (QTL) associated with resistance to pea rust, caused by the fungus Uromyces pisi (Pers.) Wint., has been identified in a F₂ population derived from an intraspecific cross between two wild pea (Pisum fulvum L.) accessions, IFPI3260 (resistant) and IFPI3251 (susceptible). Both parental lines and all the segregating population displayed a fully compatible interaction (high infection type), which indicates absence of hypersensitive response. Nevertheless, differences on the percentage of symptomatic area of the whole plant (disease severity) were observed. A genetic map was developed covering 1283.3 cM and including 146 markers (144 random amplified polymorphic DNA (RAPDs) and two sequence tagged sites (STSs) markers) distributed in 9 linkage groups. A QTL explaining 63% of the total phenotypic variation was located in linkage group 3. RAPDs markers (OPY11₁₃₁₆ and OPV17₁₀₇₈) flanking this QTL should allow, after their conversion in SCARs, a reliable marker-assisted selection for rust resistance.     

Characterization of resistance response of pea (Pisum spp.) against rust (Uromyces pisi)

Components of resistance to the pea rust (Uromyces pisi) were studied at the histological level in seedlings of seven pea (Pisum spp.) accessions showing partial resistance under field conditions. Resistance was characterized macroscopically by an increased latent period and a decreased infection frequency in spite of a compatible interaction (high infection type). Histological investigations revealed little differences among accessions in spore germination and appressoria formation, differences being more evident once the stomata were penetrated by the infection structures. Resistance was mainly due to a restriction of haustorium formation with significant levels of early aborted colonies in accessions IFPI3260, PI347321 and PI347347. Furthermore, a reduction in the number of haustoria per colony, hyphal tips per colony and smaller colony size were found in all genotypes studied. Resistance was not associated with early‐ or late‐acting hypersensitivity in any of the genotypes studied.     

Two powdery mildew resistance mutations induced by ENU in Pisum sativum L. affect the locus er1

The alkylating compounds and strong mutagens methylnitrosourea (MNU) and ethylnitrosourea (ENU) were used to widen the genetic variability of pea (Pisum sativum L.) via experimental mutagenesis. Amongst multiple mutations of agronomical interest, for the first time two mutations conferring broad-range resistance to powdery mildew (Erysiphe pisi Syd.) were induced in pea. Mutagenic treatments were carried out on seedlings using a technique that ensures very high mutagenic efficiency. Two-hour exposure of cv. Solara seedlings to chemical mutagens resulted in almost non noticeable lethality and sterility in the M1 generation and very high mutation rates: ~39% families with visible mutations in the M2 generation. The influence of the cell cycle phase on the process of mutagenesis was studied in cv. Frilene using a previously developed technique for synchronization of shoot apical meristem cells. The cell cycle phase at which cells were treated apparently did not influence the lethality and sterility in the M1 generation, while the visible mutation rate, assessed in the M2 generation, showed a clear cell cycle dependency. Seedlings treated at the G2 and M phases gave rise to progenies exhibiting the highest mutation rate, over 50% of M2 families with visible mutations. The powdery mildew resistant (PMR) mutant S(er1mut1) was induced by treatment of cv. Solara seedlings for 2 h with ENU, while the PMR mutant F(er1mut2) was induced by treatment of cv. Frilene seedlings with the same chemical mutagen for 1 h during the G2 phase of the cell cycle. The genetic analysis of the novel PMR mutant lines showed that both resistances are inherited as monogenic recessive traits. The performed genetic complementation analyses revealed that both mutations affect the same locus—er1, which determines most of the natural sources of PMR in pea. A project aiming at the isolation of the powdery mildew resistance mutated gene via map based cloning is currently under way.     

豌豆抗白粉病资源筛选及分子鉴定

由豌豆白粉菌引起的白粉病是豌豆生产上的重要病害,利用抗病品种是防治该病害最经济有效的方法。本研究在控制条件下苗期接种鉴定了396份豌豆资源对2个不同地理来源的豌豆白粉病菌分离物EPBJ和EPYN的抗性,用4个与豌豆抗白粉病基因er1连锁的SCAR标记对66份免疫或抗病资源进行标记基因型鉴定。结果表明,在鉴定的396份资源中,有101份资源表现免疫或抗病,其中对分离物EPBJ和EPYN免疫的资源分别为59份(14.9%)和60份(15.2%),对2个分离物均免疫的资源有54份(13.6%);在鉴定的82份中国资源中,有8份对2个分离物均表现免疫。分子标记将66份免疫或抗病资源鉴定为13个标记基因型,同一地理来源的抗性资源分属不同的标记基因型,其中8份来自中国云南的抗性资源分属7个标记基因型。研究表明,中国存在有效的豌豆白粉病抗源,抗性资源具有丰富的遗传多样性。     

Genetic analysis of adult plant resistance to powdery mildew in pea (Pisum sativum L.)

Summary An analysis of adult plant resistance of powdery mildew in 15 F₁, F₂ and F₃ populations of pea derived from crossing 15 diverse and susceptible lines with one resistant line revealed that resistance to powdery mildew is controlled by duplicate recessive genes. The genes were designated as er₁ and er₂.Disease reaction showed independent segregation with three known markers in the resistant parent, namely, af (afila, chromosome 1), st (stipule reduced, chromosome 3) and tl (clavicula, chromosome 7).Contribution form the Department of Genetics and Plant Breeding Banaras Hindu University, Varanasi-221005, India.     

四川豌豆种质资源白粉病抗性及分子鉴定

豌豆白粉病是由白粉菌（Erysiphe pisi D. C.）引起的豌豆最重要的病害之一,控制豌豆白粉病最经济有效且环保的方法是种植抗病品种。在温室条件下对400份豌豆种质资源进行白粉病抗性鉴定,同时利用7个与已知豌豆抗白粉病基因连锁的分子标记进行基因型鉴定。结果表明,在400份资源中,有8份表现免疫,3份表现抗病,5份表现抗感分离,其余384份均为感病;16份抗性资源中有10份来自于四川省中部不同纬度地区,其余6份为国外引进资源;7个分子标记将400份种质资源分为39个标记基因型,其中16份抗性资源分为7个标记基因型。上述抗性资源及其标记基因型可有效应用于豌豆白粉病抗性育种的研究中。     

Molecular mapping of powdery mildew resistance genes in wheat: A review

Powdery mildew, caused by Blumeria graminis f. sp. tritici (syn. Erysiphe graminis f. sp. tritici), is one of the most important diseases of common wheat (Triticum aestivum L.) worldwide. Molecular mapping and cloning of genes for resistance to powdery mildew in hexaploid wheat will facilitate the study of molecular mechanisms underlying resistance to powdery mildew diseases and help understand the structure and function of powdery mildew resistance genes, and permit marker-assisted selection in breeding programs. So far, 48 genes/alleles for resistance to powdery mildew at 32 loci have been identified and located on 16 different chromosomes, of which 21 resistance genes/alleles have been tagged by restriction fragment length polymorphisms (RFLPs), random-amplified polymorphic DNAs (RAPDs), amplified fragment length polymorphisms (AFLPs), sequence characterized amplified regions (SCARs), sequence-tagged sites (STS) or simple sequence repeats (SSRs). Several quantitative trait loci (QTLs) for adult plant resistance (APR) to powdery mildew have been associated with molecular markers. The detailed information on chromosomal location and molecular mapping of these genes has been reviewed. Isolation of powdery mildew resistance genes and development of valid molecular markers for pyramiding resistance genes in breeding programs is also discussed.     

小麦抗白粉病SSH-cDNA文库中差异基因的表达模式

为了解白粉菌诱导下抗白粉病小麦的抗病机制,构建了白粉菌接种初期的抑制性消减杂交cDNA(SSH-cDNA)文库。从中随机挑取140个阳性克隆进行测序,去除冗余序列和重复序列后,得到94条EST,利用NCBI的BLAST在线序列比对工具对GenBank的蛋白质数据库进行同源性比对及功能分类。结果表明,49个EST与已知功能蛋白同源性较高,主要涉及初级代谢(2%)、能量代谢(24%)、细胞结构(2%)、转录(2%)、蛋白质合成加工与储藏(16%)、转运(4%)、信号转导(4%)和抗病与防御(30%)。经文库比较,筛选出与病程相关蛋白基因同源的EST(Z25-1)和与谷胱甘肽硫转移酶同源的EST(Z440-1),GenBank登录号为EX567369和EX567360。以其EST序列为依据设计引物,通过RT-PCR分析它们在白粉菌诱导下的表达模式,结果该2基因表达存在明显差异。其中,Z25-1在未接种白粉菌时具有一定的表达量,白粉菌侵染后表达量开始上升,侵染72 h时表达量最高,然后下降;Z440-1在未接种时也具有一定的表达量,但在接种初期表达微弱,甚至不表达,24 h后表达开始上升,到72 h时达最高,然后下降。本研究表明,病程相关蛋白和谷胱甘肽硫转移酶属于诱导型表达基因,且参与白粉病抗病反应,在白粉菌诱导72 h时表达量最高。     

Search for novel genes for resistance to powdery mildew (Sphaerotheca fuliginae) in cucumber (Cucumis sativus)

Summary The current powdery mildew (Sphaerotheca fuligninea) resistant cucumber varieties suffer from leaf chlorosis during autumn, winter and early spring cultivation in the Netherlands. Therefore screening was carried out for novel powdery mildew resistance genes. From 177 accessions, derived from different sources, 108 accessions proved to be partially resistant to S. fuliginea. Crosses were made with 53 resistant accessions to distinguish the presence of novel genes. It is likely that the accessions C. sativus 2145, C. sativus LV 41, PI 188807, Vladivostokij, White and Yellow 1 have one or more recessive powdery mildew resistance genes, different from powdery mildew resistance genes of the line NPI, which was used for variety breeding. Powdery mildew resistance tests with S. fuliginea give similar results in different regions of the world.Abbreviations pmr powdery mildew resistance     

Identification and chromosomal locations of novel genes for resistance to powdery mildew and stripe rust in a wheat line 101-3

Wheat powdery mildew and stripe rust, caused by Blumeria graminis f.sp.tritici (syn. Erysiphe graminis f.sp.tritici) and Puccinia striiformis Westend., respectively, are two important fungal diseases of wheat in many regions in the world that cause significant annual yield losses. In the present study, a dominant powdery mildew and a dominant stripe rust resistance gene in wheat line 101-3 which derived from the progenies of the wide cross between common wheat and Dasypyrum villosum Candary L., was located on chromosome 6B and 1B, respectively, by monosomic analyses. The two genes are different from known resistance genes on chromosome 6B for powdery mildew and 1B for stripe rusts, suggesting that the two genes might be novel resistance genes for powdery mildew and stripe rust, respectively. It is uncertain whether the two genes are allelic or lined with other resistance genes located on chromosome 6B for powdery mildew and 1B for stripe rust. Further allelism tests are necessary to determine the relationships between the resistance gene and other genes located on chromosome 6B for powdery mildew and 1B for stripe rust through molecular markers.     

Identification of DNA markers linked to an induced mutated gene conferring resistance to powdery mildew in pea (<Emphasis Type="Italic">Pisum sativum</Emphasis> L.)

We have recently induced two powdery mildew (Erysiphe pisi Syd) resistant mutants in Pisum sativum L. via ethylnitrosourea (ENU) mutagenesis. Both mutations (er1mut1 and er1mut2) affected the same locus er1 that determines most of the identified natural sources of powdery mildew resistance (PMR) in this crop. The mutated gene er1mut2 was mapped to a linkage group of 16 DNA markers combining three main strategies: near isogenic lines (NILs) analysis, bulked segregant analysis and genetic mapping of randomly identified polymorphic markers, together with three DNA-markers techniques: ISSR, RAPDs and AFLPs. Markers located closer to the PMR locus, OPO06_1100y (0.5 cM), OPT06₄₈₀ (3.3 cM) and AGG/CAA₁₂₅ (5.5 cM), were cloned and converted into SCAR markers. Markers AH1R₈₅₀ and AHR_920y were found to be allelic and converted into the co-dominant marker ScAH1 (16.3 cM). Two previously known DNA markers, ScOPE16₁₆₀₀ and A5_420y, were mapped at 9.6 and 23.0 cM from the PMR locus, respectively. The novel markers identified in this study are currently being transferred to a new F2 mapping population derived from a cross between the induced PMR mutant line F(er1mut2) and a more genetically distant susceptible line of Pisum sativum var. arvense.     

瓠瓜(Lagenaria siceraria)白粉病抗性的全基因组关联分析

白粉病是瓜类作物重要病害之一。本研究采用苗期人工接种方法,研究了117份瓠瓜微核心种质对白粉病的抗性,并基于不同材料的病情指数和基因型数据,进行全基因组关联分析(genome-wide association analysis,GWAS)。利用2014年和2018年的抗病表型数据,分别鉴定到22个和13个与白粉病抗性相关的SNPs,其中2个SNPs位点在两年试验中同时被检测到。进一步研究发现不同瓠瓜材料的白粉病抗性与其携带有利等位变异数目成正相关。本研究为克隆瓠瓜抗白粉病相关基因、研究其抗病机制提供科学依据,促进了瓠瓜抗白粉病分子育种。     

Molecular mapping of partial resistance to powdery mildew in winter wheat cultivar Folke

The Swedish winter wheat (Triticum aestivum L.) cultivar Folke has a long record of partial and race non-specific resistance to powdery mildew (caused by Blumeria graminis f. sp. tritici) in the field. The aim of the present study was to map the main genetic factors behind the partial resistance in Folke and identify molecular markers for use in marker-assisted selection. A population of 130 recombinant inbred lines was developed from a cross between Folke and the moderately susceptible spring wheat line T2038. The population was tested for powdery mildew resistance over two years at two locations in Norway and genotyped with DArT and SSR markers. Composite interval mapping detected a total of eight quantitative trait loci (QTL) for powdery mildew resistance; six with resistance from Folke on 2BS, 2DL, 5AL, 5BS and 6BS and two with resistance from T2038 on 5BS and 7AL. None of the loci with resistance from Folke mapped to chromosomal regions with known race-specific resistance genes, which confirmed the race non-specific nature of the resistance in this cultivar. The molecular markers linked to the reported QTL will be useful as a tool for selecting partial and potentially durable resistance to powdery mildew based on the resistance in Folke.     

RAPD and SCAR markers for powdery mildew resistance gene er in pea

In pea, a single recessive gene (er) on linkage group 6 confers resistance to powdery mildew caused by Erysiphe pisi. The present study aims to identify molecular markers linked to the er gene. Screening of the powdery mildew‐resistant cultivar ‘DMR11’ and its susceptible nearisogenic line for polymorphism revealed linkage of two RAPD primers (OPO‐02 and OPU‐17) to the er gene and a sequence characterized polymorphic region (SCAR) primer, ScOPD‐10₆₅₀ with er in a population of 83 F₂ plants in the order: OPU‐17 ‐ er ‐ ScOPD‐10₆₅₀ ‐ OPO‐02. The markers ScOPD‐10₆₅₀ and OPU‐17 being coupled with the allele causing resistance would substantially increase the efficiency of marker‐assisted selection in peabreeding for powdery mildew.     

Detection of downy and powdery mildew resistance QTL in a ‘Regent’ × ‘RedGlobe’ population

One hundred and eighty six F₁ plants from a ‘Regent’ × ‘RedGlobe’ cross were used to generate a partial linkage map with 139 microsatellite markers spanning all 19 chromosomes. Phenotypic scores for downy mildew, taken over two years, confirmed a major resistance QTL (Rpv3) against downy mildew in the interval VVIN16-cjvh to UDV108 on chromosome 18 of ‘Regent’. This locus explained up to 62 % of the phenotypic variance observed. Additionally a putative minor downy mildew resistance locus was observed on chromosome 1 in one season. A major resistance locus against powdery mildew (Ren3) was also identified on chromosome 15 of ‘Regent’ in the interval UDV116 to VChr15CenGen06. This study established the efficacy of and validated the ‘Regent’-derived downy and powdery mildew major resistance genes/QTL under South African conditions. Closely linked SSR markers for marker-assisted selection and gene pyramiding strategies were identified.