Effects of fragmentation on artificial nest predation in a tropical forest in Kenya

Nest predation has been established as a leading source of reproductive failure in songbirds. Numerous studies, conducted primarily in the Northern Hemisphere, have linked high rates of nest predation with fragmentation and habitat edges. To date, virtually no such studies have been conducted in Tropical Africa. Here we investigate the effects of disturbance level and edge on depredation of artificial avian nests in six fragments of Kakamega Forest, Kenya. We found that nest losses were higher at the edge than in the interior as often reported in previous studies. Surprisingly, nest predation was highest in the least disturbed fragments. One possible explanation for these findings is that top predators are missing from Kakamega Forest, allowing nest predator populations to increase in all fragments, while in the highly disturbed fragments, domestic dogs might be surrogates for top predators. Alternatively, human activity may itself lead to a decline in mesopredator populations.     

Effects of fragmentation on pollinator assemblage, pollen limitation and seed production of Mediterranean myrtle (Myrtus communis)

Pollinator assemblages may shift as a consequence of the destruction and fragmentation of natural habitats. The scarcity of mates and pollinators can lead plant populations to suffer from pollen limitation and a decrease in reproductive performance within fragmented areas. We studied the shift in pollinator assemblages along with pollen limitation and seed production patterns in the Mediterranean shrub Myrtus communis. Our study included six populations contrasting in patch and population size (Large vs. Small) within a fragmented landscape characterized by ∼1% of potential forest coverage. The breeding system in Myrtus communis was self-compatible, but compared with natural pollination, fruit set increased with pollen addition (quantity limited), and seed set (brood size) increased with outcross pollen addition (quality limited). While the pollinator assemblage in Large patches was taxonomically diverse, it was almost monopolized by honeybees in Small patches, where visitation rates were highest and wild bee species were almost absent. In general, Small populations were less pollen limited for fruit set than Large populations, particularly those that received the highest rates of honeybee visits. However, despite differences in fragmentation and pollinators between Large and Small populations, seed production patterns (brood size and seed mass) were rather similar among them, in agreement with similar pollen limitation levels found for brood size. A higher susceptibility of native pollinators to the presence of honeybee hives was found in Small patches, suggesting that the pollinator assemblage may be severely altered when fragmentation occurs in combination with beekeeping. We discuss its implications and effects on plant reproduction in fragmented areas.     

Impact of selective logging on genetic composition and demographic structure of four tropical tree species

Over-exploitation and fragmentation are serious problems for tropical forests. Most sustainable forest management practices avoid clear-cuts and apply selective logging systems focused on a few commercial species. We applied a simulation model to estimate the impact of such selective logging scenarios on the genetic diversity and demography of four tropical tree species from French Guiana. The simulations used data on genetic and demographic composition, growth, phenology and pollen and seed dispersal obtained for Dicorynia guianensis, Sextonia rubra, Symphonia globulifera and Vouacapoua americana at the experimental site in Paracou. Whereas Symphonia globulifera serves as a model for a species with low logging pressure, the other three species represent the most exploited tree species in French Guiana. In simulations with moderate logging, typical for French Guiana, with large cutting diameter (>60 cm diameter) and long cutting cycles (65 years), the two species V. americana and Sextonia rubra were not able to recover their initial stock at the end of the rotation period, with a large decrease in the number of individuals and in basal area. Under a more intensive logging system (cutting diameter >45 cm diameter, cutting cycles of 30 years) that is common practice in the Brazilian Amazon, only Symphonia globulifera showed no negative impact. Generally, the differences between the genetic parameters in the control scenarios without logging and the logging scenarios were surprisingly small. The main reasons for this were the overlapping of generations and the effective dispersal ability of gene vectors in all species, which guarantee relative homogeneity of the genetic structure in different age classes. Nevertheless, decreasing the population size by logging reduced the number of genotypes and caused higher genetic distances between the original population and the population at the end of the logging cycles. Sensitivity analysis showed that genetic changes in the logging scenarios were principally determined by the growth, densities and cutting diameter of each species, and only to a very small extent by the reproductive system including factors such as pollen and seed dispersal and flowering phenology.     

The effects of forest fragmentation on euglossine bee communities (Hymenoptera: Apidae: Euglossini)

Despite scientific and media attention on pollinator declines, there is still only a rudimentary understanding of the response of bees—the most important group of pollinators worldwide—to ongoing land use changes. Euglossine bees are an ecologically important Neotropical clade of forest-dependent pollinators. Despite the fact that euglossines are well studied relative to other groups of tropical bees, only three previous studies, all from Brazil, address the response of euglossines to forest fragmentation. In this study, I tripled the maximum sample size of previous efforts by sampling male euglossines in 22 forest fragments ranging in area from 0.25 ha to 230 ha in southern Costa Rica, using chemically baited Van Someren traps. Abundance of euglossine bees was significantly positively related to forest fragment size, negatively related to shape (edge:area ratio), and marginally related to fragment isolation. Euglossine species richness showed similar, but weaker trends: richness was significantly positively related to the quantity of forest edge, marginally negatively related to fragment area, and not related to fragment isolation. The positive relationship between euglossine richness and abundance and forest fragment edge is consistent with other studies that have found high euglossine density in secondary or disturbed forest. The data suggest that individual euglossines move between forest fragments, as has been shown in other systems. Still, forest fragmentation appears to affect euglossine bees more strongly than other bee groups in the study region. Their large flight range and positive relationship with forest edges may help to buffer the negative effects of fragmentation, allowing euglossines to utilize even the very smallest forest fragments in the study area.     

Influence of habitat fragmentation on the genetic structure of Polyommatus coridon (Lepidoptera: Lycaenidae): implications for conservation

Conservation biologists pay increasing attention to the interdependence between habitat structure and genetic patterns of species and to the importance of conserving genetic diversity. A suitable model species for such a study is Polyommatus coridon, a butterfly of dry calcareous grassland. We studied the population genetic structure of 22 western German populations of this species (874 individuals). We observed no congruence between the observed genetic structure and the geographic arrangement of the studied populations. Genetic diversity was slightly higher in large populations than in small populations. Differentiation among populations was weak or even missing. Populations of an area with high habitat density showed no significant differentiation, whereas areas with low habitat densities showed significant genetic differentiation among populations. At present, hierarchical variance analysis revealed no differentiation between four distinguished limestone areas. The combination of all analytical results allow the definition of management units for P. coridon. Conservation measures are proposed from which a large number of rarer species occurring together with P. coridon will benefit.     

Fragmented but not isolated: Contribution of single trees, small patches and long-distance pollen flow to genetic connectivity for Gomortega keule, an endangered Chilean tree

Habitat fragmentation is a major threat to species survival worldwide due to genetic isolation, inbreeding depression, genetic drift and loss of adaptive potential. However the data on how gene-flow changes following habitat fragmentation is contradictory. If there is significant gene-flow between spatially isolated populations then limited conservation resources could be directed away from projects to ‘establish genetic connectivity’ and used to address other consequences of habitat fragmentation.This research focused on an endangered tree species Gomortega keule (Gomortegaceae) in a fragmented landscape in the Central Chile Biodiversity Hotspot and addressed three questions: (1) How far does pollen move between pollen donors and seed trees and what is the shape of the dispersal curve? (2) Do insect pollinators travel outside of forest patches? (3) Do small populations and single trees contribute to genetic connectivity across the landscape?Paternity analysis results show that G. keule’s insect pollinators travel outside of forest patches, over distances of 6 km, beyond the scale of population fragmentation or genetic structure. Pollen moved from small sites and single trees into large sites, as well as in the other direction, indicating these sites play a key role as functioning elements of the wider population and as stepping stones between sites. Fragmentation at the scale investigated has not led to genetic isolation, thus genetic connectivity per se is not a conservation priority. Other consequences of land-use change, specifically continuing habitat loss and population reduction, still threaten the survival of the species.     

Phylogenetic diversity of endangered and critically endangered southeast Asian softshell turtles (Trionychidae: Chitra)

The intense exploitation of turtles in Asian markets has contributed to declines in turtle populations across the continent. Three-quarters of Asia’s turtles are threatened and half are endangered. A recent workshop on the Asian turtle crisis identified taxonomic studies of widespread species as a priority for research because these low risk species may include unrecognized, narrowly distributed taxa of much higher concern. Chitra indica is a widely exploited softshell turtle (family Trionychidae) found across southern Asia. Individuals from Thailand have been described as a separate species, Chitra chitra, but this has not been universally accepted, and many sources consider Chitra monotypic. Phylogenetic analysis of sequence data from the mitochondrial ND4 gene revealed three deeply divergent, monophyletic lineages within Chitra: C. indica, C. chitra, and a third unnamed form from Myanmar. This new form is probably Critically Endangered, which highlights the importance of systematic studies in determining conservation priorities.     

Extreme neutral genetic and morphological divergence supports classification of Adriatic three-spined stickleback (Gasterosteus aculeatus) populations as distinct conservation units

The fact that the intraspecific genetic differentiation in neutral genetic markers and genes coding for adaptive traits are not typically correlated has caused a great deal of conceptual and practical trouble in delimitation of conservation units. Although the importance of combining information on adaptive genetic divergence with information on historical and recent gene flow in the delimitation of conservation units has been recognized, integrated empirical studies to this end are still rare. We explored the evidence for the specific conservation status of two freshwater three-spined stickleback (Gasterosteus aculeatus) populations on the Adriatic side of the Balkan Peninsula by comparing their phenotypic and genetic characteristics to those of other representative European populations. Apart from focusing on the neutral genetic divergence in mitochondrial DNA sequences and microsatellite markers, we also compared the patterns of morphological differentiation (i.e. bony armour development) resulting from adaptation to freshwater environments. The Balkanic populations formed two distinct groups with regard to neutral genetic variation and had the least developed bony armour of all the examined populations. All morphometric analyses identified the two Balkanic populations as phenotypically – and hence most likely also ecologically – clearly distinct from other European three-spined stickleback populations. These results suggest that the two Balkanic populations (River Neretva and River Zeta) fulfil the most stringent criteria (i.e. lack of genetic and ecological exchangeability) to be classified as conservation units distinct from other European three-spined stickleback populations.     

Habitat and food choice of the critically endangered cao vit gibbon (Nomascus nasutus) in China: Implications for conservation

Knowledge of habitat and feeding ecology is essential for developing an effective conservation management plan for threatened primates. Despite having been rediscovered nearly a decade ago, very little is known of the critically endangered cao vit gibbon (Nomascus nasutus) or its habitat. We analysed forest cover, made direct observations and conducted interviews of local elders to better understand forest changes and to determine the forest characters and species important to the survival of the gibbon. Interviews indicated human-induced forest resource exploitation focused on species-specific and larger trees most easily accessed. Gibbon forest habitat comprised four primary forest types. The mean canopy height over the whole site was 10.52 m. Gibbons consumed 81, or nearly half of the tree and liana species recorded in the site; however, only 19 species provide 77.8% of the diet. Six of the 19 food species were logged for different reasons throughout the history of the site. We conclude that effective conservation management of primates with highly limited distributions, focused dietary needs, and in degraded ecosystems will require active forest restoration, such as planting important food species in degraded sites.     

Relationship between population size and genetic diversity in endangered populations of the European bullhead (Cottus gobio): implications for conservation

This study investigated the relationship between the current size of endangered bullhead (Cottus gobio) populations and microsatellite genetic variability. Additionally, the microsatellite data were used to evaluate whether a genetic test for population bottlenecks was able to provide evidence of recent severe population declines. Finally, our results were used to develop conservation priorities and measures. Population size appears to be a crucial parameter in determining the amount of genetic diversity that can be preserved in bullheads, since a significant positive correlation was observed between both variables. Furthermore, in some populations we were able to detect genetic signatures of the documented decline in population size. We suggest that the most immediate goal for bullhead conservation should be to increase the size and the range of the populations, and in doing so minimise or even reverse further genetic erosion. Potential management actions like habitat quality improvement, reduction of river fragmentation and supplementation programmes (translocation, supportive breeding) are discussed.     

Distribution and stand characteristics of relict populations of Mexican beech (Fagus grandifolia var. mexicana)

Fagus grandifolia var. mexicana (Mexican beech) is limited to about 10 populations (2-35 ha) in the Sierra Madre Oriental, Mexico. The objectives were to assess the current status and distribution of beech by surveying five sites. Species richness varied between three to 27 tree species in the canopy, and from nine to 29 species in the understorey. Basal area of trees?5 cm dbh varied between 27.87 and 70.98 m² ha⁻¹, and density from 370 to 1290 individual ha⁻¹. Beech represented 22-99.6% of total basal area, and 6.8-83.3% of total density. Beech dominance varied from monodominant to codominance with Carpinus caroliniana, Quercus spp., Liquidambar styraciflua, Magnolia schiedeana, and Podocarpus spp. Beech total population size ranged from 180 to 6300 trees with a total of less than 1300 individuals in four sites. Anthropogenic disturbance remains a major threat to these forests. It is uncertain whether Mexican beech will be able to survive without conservation efforts.     

Land use changes the soil carbon stocks,microbial biomass and fatty acid methyl ester (FAME) in Brazilian semiarid area

Land use affect soil C and microbial structure, especially in tropical dry areas. The objective of this study was to evaluate the effects of the land use on physical, chemical, and microbiological attributes of soils from Brazilian semiarid. We analyzed soil physical, chemical, total carbon stocks (TCS), water-soluble carbon (WSC), microbial biomass carbon (MBC) and microbial structure of soil from forest, no irrigation maize, succession areas (Anadenanthera falcate and Tabebuia alba) and secondary shrubby vegetation. The use of soil influences C stock. The forest soil showed higher TCS and MBC. The conversion in T. alba reduced in 9% soil total bacteria. The multivariate analysis showed that TCS, MBC and FAMEs contributed to separation of natural forest and other areas in the superficial layer. This study indicates that the conversion of forest into successional areas can decrease by up to 44% TCS and 68% MBC. The present study provided alarming data concerning the impact of land use on quality of soil in a tropical dry region in Northeastern Brazil. Our results provide an alternative tool for the management of deforested dry areas that could serve as guideline for management plan to sustainability for agricultural impacted dry areas.     

Effect of sea-level rise on piping plover (Charadrius melodus) breeding habitat

Climate change is raising sea levels, threatening many low-lying coastal areas and associated wildlife. We assessed the threat of sea-level rise (SLR) to the breeding habitat of the federally threatened piping plover on the barrier islands of Suffolk County, New York. We determined the extent of habitat change over the next 100 years under several SLR estimates, as well as the interactive effects of coastal development and storm surge. We found that if plover habitat cannot migrate, SLR is likely to reduce breeding areas. However, if habitat is able to migrate upslope and inland, breeding areas could actually increase with SLR. Unfortunately, this potential habitat gain is stymied by human development, which we found to reduce migrating habitat by 5–12%, depending on SLR estimates. We also found that the spatial configuration of developed areas mattered more than intensity of development in blocking the migration of potential habitat area. Our results raise concern over the likelihood of increased conflict between plover habitat protection and human recreation as habitat is likely to become a larger proportion of the barrier islands in the future. Finally, our results highlight risk from the synergism between SLR and coastal storms, as we estimate that a large hurricane could flood up to 95% of plover habitat. To assure the future of plover habitat on these barrier islands, management needs to promote natural overwash and habitat migration, while minimizing development adjacent to future breeding habitat.     

Tillage and plastic mulch effects on soil properties and growth and yield of cocoyam (Colocasia esculenta) on an ultisol in southeastern Nigeria

Protected cultivation, mainly represented by plastic-film mulching, has greatly improved crop production worldwide since the 1950s. However, despite its widespread use in tropical USA, Europe and China, its use in sub-Saharan Africa is not widespread. A field experiment was conducted using cocoyam (Colocasia esculenta L. Schott) to evaluate the effects of two tillage systems (tilled and no-till) and plastic-film mulch (black and clear plastic-film mulch) on soil properties and cocoyam growth and yield in 2003 and 2004 planting seasons on a Typic paleudult in southeastern Nigeria. The experiment comprised six treatments and was laid out in the field using randomized complete block design replicated three times. Results showed that 70–80% of the corms emerged 7–8 days (21 days after planting [DAP]) earlier in both tilled and no-till plastic-film mulched plots when compared to the unmulched plots. At later stages of crop development, the plants in the tilled black plastic-film mulched plots were taller by 61–67% than those in the unmulched no-till plots, which had the lowest plant height (27–30 cm). At 98 DAP, there were no significant treatment differences in leaf area index (LAI) between tilled and no-till mulched plots with LAI of 15.5–19.8. However, LAI was reduced in both unmulched plots by 35–54% when compared to the mulched plots. On the average soil temperature was higher in plastic-film mulched plots than that under plots without mulch by about 2 °C. Results show significantly lower soil bulk density (between 1.10 and 1.26 Mg m⁻³) in both tilled clear and black plastic-film mulched plots when compared to the corresponding no-till clear or black plastic-film mulched plots (1.40–1.45 Mg m⁻³). For the two seasons studied volumetric water content (VWC) in tilled black plastic-film mulched plots were significantly higher than VWC in other mulched plots by between 10 and 38% in 2003 and between 17 and 30% in 2004. At harvest (270 DAP) the highest corm yield was obtained in tilled black plastic mulched plots (29.1 Mg ha⁻¹). This was higher (P = 0.05) than yields obtained in no-till, no mulch plots by 72%. Yields were also higher in tilled black plastic mulched plots when compared to tilled clear plastic mulched plots, no-till black plastic mulched plots and no-till clear plastic mulched plots by 29, 47 and 59%, respectively. These findings suggest that plastic mulched plots provide a better soil environment for cocoyam than unmulched plots and that tilled mulched plots especially tilled black plastic mulched plots provide superior edaphic environment for cocoyam when compared to other treatments used.     

Consequences of ex situ cultivation of plants: Genetic diversity, fitness and adaptation of the monocarpic Cynoglossum officinale L. in botanic gardens

Ex situ collections in botanic gardens have great potential in contributing to the conservation of rare plants. However, little is known about the effects of cultivation on the genetic diversity and fitness of garden populations, about genetic changes due to unconscious selection and potential adaptation to the artificial conditions. We compared the genetic variability and fitness of the rare, short-lived perennial Cynoglossum officinale from 12 botanic gardens and five natural populations in Germany. Genetic variability was assessed with eight nuclear microsatellites. Plants were grown in a common garden and performance was measured over 2 years. Mean genetic diversity was very similar in botanic garden and natural populations. However, four of the garden populations exhibited no genetic variability at all. Moreover, the genetic diversity of garden populations decreased with increasing duration of cultivation, indicating genetic drift. Plant performance from natural and garden populations in terms of growth, flowering and seed production was similar and in garden populations only seed mass was strongly related to genetic diversity. Several lines of evidence indicated genetic changes in garden populations in response to cultivation. Seed dormancy was strongly reduced in garden populations, and in response to nutrient addition garden plants increased the size of their main inflorescence, while wild plants increased the number of inflorescences. These changes could be maladaptive in nature and reduce the suitability of garden populations as a source for reintroductions. We suggest that botanic gardens should pay more attention to the problem of potential genetic changes in their plant collections.     

The impact of clonality on an endangered tree (Elaeocarpus williamsianus) in a fragmented rainforest

The occurrence and distribution of clonality in the endangered rainforest tree Elaeocarpus williamsianus (Elaeocarpaceae) was investigated using SSR and RAPD analyses for 170 apparent individual trees found across seven sites. The results obtained with the two molecular techniques were in complete agreement in showing that single clones are present in most of the E. williamsianus sites with two genets occurring at the largest and most adequately protected site. In addition, seed production, viability and germinability were determined for four of these populations. Fruit were produced in all four populations tested although sterile fruit were very common. Only two E. williamsianus trees representing different genets within the same site produced viable seed. The overall genetic diversity within E. williamsianus is much lower than expected and thus the potential for sexual reproduction has been significantly diminished. It is concluded that habitat fragmentation removed an existing balance between vegetative and sexual reproduction in this species. Such findings have added urgency to the management of this species which could include a reintroduction program incorporating the collation of all clones within selected sites.     

Seasonal distribution of Xenylla brevispina (Collembola) in the canopy and soil habitat of a Cryptomeria japonica plantation

We investigated the life cycle and habitat use of an arboreal collembolan species, Xenylla brevispina, in the canopy and soil of a conifer (Cryptomeria japonica D. Don) plantation. The adaptive significance of migration between arboreal and soil habitats in the maintenance of its population in relation to the vertical structure of the forest is discussed. We sampled dead branches with foliage in the canopy (canopy litter) and on the forest-floor (soil litter). X. brevispina had one generation a year throughout the 3 years of the study. The mean densities of X. brevispina were similar in the canopy litter (0.06 to 14.57 g⁻¹ dry weight) and the soil litter (0.44 to 18.99 g⁻¹ dry weight). Seasonal patterns of density and relative abundance indicate that individuals of X. brevispina in the canopy were closely associated with those in the soil. These results suggest that vertical migration between the canopy and the soil might be a strategy allowing X. brevispina to be a predominant collembolan species in this forest.     

Comparative analysis of Andiodrilus pachoensis casts in forests and pastures of South-Eastern Amazon (Brazil)

Soil ecosystem engineers produce biogenic structures (casts, mounds, galleries) that strongly affect soil processes. A comparative analysis of the physical characteristics of the casts produced by the earthworm Andiodrilus pachoensis was carried out in four pastures sowed with Brachiaria brizantha and four primary forests on the deforestation front of the Amazonian forest. In both systems, we recorded surface cast density and spatial patterns as well as surface cast physical properties. Cast and vegetation distributions were mapped within plots of sizes ranging from 25 to 50 m², and cast production was monitored during 2 months. Cast spatial distribution varied greatly among plots and across spatial scales ranging from regular at small spatial scales (0–20 cm) to clumped for larger distance ranges (>80 cm). Cast density was not significantly correlated with grass tuft density and their production was independent from the presence of grass tufts in pastures or litter quantity in forests. Although bulk soil properties (pH, C content, structural stability, etc) differed between pastures and forests, cast physical properties did not differ significantly among the studied ecosystem.     

Oleaster (var. sylvestris) and subsp. cuspidata are suitable genetic resources for improvement of the olive (Olea europaea subsp. europaea var. europaea)

The olive belongs to Olea, a complex genus and to a species with six subspecies. Subsp. europaea includes both the cultivated olive and the oleaster, the wild ancestor of the olive. Little is known on the phenotype of fruits from subsp. cuspidata. We aimed to compare europaea and cuspidata trees for oil content and composition and to verify whether natural hybrids may exist between the two subspecies. Specimens were from Kenya and putative natural hybrids between cuspidata and europaea were from Stellenbosch (South Africa). Cultivar and oleaster trees were sampled in France (continental and Corsica), Italy (Continental and Sardinia) and Tunisia. We have examined the fruit (drupe) structure between subsp. cuspidata and europaea and extracted oil from the pulp, seed and total drupe. Comparison for oil content was made between the cultivated olive and the oleaster and some cuspidata trees from Kenya. A few of cuspidata individuals from Botanical gardens do not enable phenotyping for oil content and composition. Oil composition analyses were performed for the main fatty acids to compare the three taxa. We used microsatellite markers at 11 loci to compute genetic distances between cuspidata, oleaster and cultivar trees and to reveal eventual hybrids. The SSR polymorphisms were huge between the two subspecies and they revealed that putative hybrids were true hybrids sampled around olive orchards. The whole comparison of oil content shows that olive cultivars display higher oil content than the subsp. cuspidata and that the oleaster trees are intermediate, whereas for oil composition of the drupe, cuspidata from Kenya shows less oleic acid than europaea. However, the cuspidata trees show seed oil composition similarities with the other two taxa. The discussion deals with possible reasons to explain the differences and of the possible uses of these taxa for breeding both the olive and brown olive. H. Hannachi and H. Sommerlatte have equal contribution in the article.     

The value of unprotected habitat in conserving the critically endangered Tana River red colobus (Procolobus rufomitratus)

We determined the importance of unprotected forest habitat outside the Tana River Primate National Reserve (TRPNR), Kenya, in conserving the critically endangered Tana red colobus. We compared colobus and forest attributes inside and outside the reserve and found no significant difference in colobus density or mean group size, although absolute values for both measures were higher outside the reserve. Forests outside TRPNR had a higher basal area of trees, basal area per tree, and basal area of stumps from human use. We also compared data on group size and composition collected inside and outside TRPNR during the period of reserve establishment (1978), 10 years after establishment (1988) and over 20 years after establishment (2000). Mean group size declined by nearly 50% since the reserve was established across all age classes both inside and outside TRPNR. Since the red colobus population is in decline and forests outside TRPNR are as suitable as those inside as colobus habitat, we recommend adopting a community-based conservation strategy of sustainable forest management and use outside TRPNR to enhance conservation goals.