Development of an accurate model to predict the phenology of Atlantic salmon smolt spring migration

1. Changes in migration timing, resulting from the alteration in river continuity or the effect of climate change, can have major consequences on the population dynamics of diadromous fish. Forecasting the phenology of fish migration is thus critically important to implement management actions aimed at protecting fish during their migration.
2. In this study, an 11‐year monitoring survey of Atlantic salmon smolts (Salmo salar) from the Ourthe River, Belgium, was analysed within a European Special Area of Conservation to improve the understanding of environment‐induced spring migration. A logistic model was fitted to forecast smolt migration and to calculate phenological indicators for management, i.e. the onset, end, and duration of migration, while accounting for the influence of photoperiod, water temperature, and hydrological conditions.
3. The results indicated that the photo‐thermal units accumulated by smolts above a 7°C temperature threshold was a relevant proxy to reflect the synergistic effect between temperature and photoperiod on smolt migration. After integrating the effect of river flow pulses, the model accurately explained the inter‐annual changes in migration timing (R² = 0.95). The model predictions provide decisive management information to identify sensitive periods during which mitigation measures (e.g. hydropower turbine shutdown, river discharge management) should be conducted to promote smolt survival.
4. The model was used to predict phenological characteristics under future scenarios of climate change. The results suggest a joint effect of hydrological alterations and water warming. Temperature increases of 1–4°C were associated with earlier initiation of migration, 6–51 days earlier, and spring flood events greatly influenced the duration of the migration period. Accordingly, the combined effects of human‐induced modifications of the hydrological regimes and increasing temperatures could result in a mismatch between the smolt and favourable survival conditions in the marine environment.

     

Variations in migration behaviour and mortality of Atlantic salmon smolts in four different hydroelectric facilities

Migration behaviour, route selection and mortality of Atlantic salmon, Salmo salar L., smolts were studied at four different hydroelectric facilities in the River Mustionjoki, Finland, in May 2017. Radio-tagged smolts were released upstream of the power stations and tracked by stationary antenna-receiver systems and hand-held receivers. Tracking revealed a general tendency of smolts to move downstream with the main flow, but also variable behaviour and mortality related to diverse conditions characteristic of each power station. Average migration delay at the power stations ranged between 13.8 and 101.1 h (median: 1.7–61.5 h). Estimated mortality ranges were 0%–50% in the forebays, 4%–64% in the power stations and 2–30%/km during river migration after passage of the dam. This study provided essential information on behaviour and mortality in relation to local conditions at each power station required for successful application of fish bypass systems in a salmon restoration project.     

Influence of river conditions during seaward migration and ocean conditions on survival rates of Snake River Chinook salmon and steelhead

Petrosky CE, Schaller HA. Influence of river conditions during seaward migration and ocean conditions on survival rates of Snake River Chinook salmon and steelhead.
Ecology of Freshwater Fish 2010: 19: 520–536. © 2010 John Wiley & Sons A/S Abstract – Improved understanding of the relative influence of ocean and freshwater factors on survival of at‐risk anadromous fish populations is critical to success of conservation and recovery efforts. Abundance and smolt to adult survival rates of Snake River Chinook salmon and steelhead decreased dramatically coincident with construction of hydropower dams in the 1970s. However, separating the influence of ocean and freshwater conditions is difficult because of possible confounding factors. We used long time‐series of smolt to adult survival rates for Chinook salmon and steelhead to estimate first year ocean survival rates. We constructed multiple regression models that explained the survival rate patterns using environmental indices for ocean conditions and in‐river conditions experienced during seaward migration. Survival rates during the smolt to adult and first year ocean life stages for both species were associated with both ocean and river conditions. Best‐fit, simplest models indicate that lower survival rates for Chinook salmon are associated with warmer ocean conditions, reduced upwelling in the spring, and with slower river velocity during the smolt migration or multiple passages through powerhouses at dams. Similarly, lower survival rates for steelhead are associated with warmer ocean conditions, reduced upwelling in the spring, and with slower river velocity and warmer river temperatures. Given projections for warming ocean conditions, a precautionary management approach should focus on improving in‐river migration conditions by increasing water velocity, relying on increased spill, or other actions that reduce delay of smolts through the river corridor during their seaward migration.     

Effects of release timing on migration behaviour and survival of hatchery‐reared Atlantic salmon smolts in a regulated river

In this study, 221 two‐year‐old hatchery‐reared salmon, Salmo salar, smolts were tagged with radio transmitters over a period of three consecutive years and released in the river in groups of 20–21 fish in various dates between late April and early June. Tagged smolts were tracked during their downstream migration in the lower 36‐km stretch of the regulated River Oulujoki, with the focus on the effects of release date, water temperature and river flow on migration behaviour and survival. The results indicate that release timing and river temperature have profound effects on the initiation of migration, swimming speed and survival of released S. salar smolts. Smolts released early in the spring in cold waters ceased migration after brief downstream movement and were vulnerable to predation, whereas the migration speed and survival rates increased markedly for smolts released later in the spring.     

Upstream migration of chum salmon through a restored segment of the Shibetsu River

Abstract –  A segment of the Shibetsu River was restored to reconstruct the ecological condition of the previously canalized river stretch to a more natural, meandering state. In this study, we investigated the upstream migration of chum salmon ( Oncorhynchus keta ) using radio transmitters to track the horizontal position of fish and data loggers to detect the vertical swimming depth of fish, simultaneously. The monitored salmon travelled near the bottom of the water column and along the riverbanks, and tended to hold in deep, slow current areas in the canalized river. In the restored segment, the fish swam at more shallow depths and against stronger currents. Although the three tracked fish all reached the confluent point and chose to enter the restored segment, they did not remain in the segment for long. This indicates that the restored area facilitates the upward migration of the chum salmon.     

Atlantic salmon in a rapidly changing environment—Facing the challenges of reduced marine survival and climate change

1. Atlantic salmon populations have declined in recent decades. Many of the threats to the species during its freshwater and coastal residency periods are known, and management approaches are available to mitigate them. The global scale of climate change and altered ocean ecosystems make these threats more difficult to address.
2. Managers need to be aware that promoting strong, healthy, and resilient wild populations migrating from rivers is the optimal approach currently to reduce the impacts of changing ecosystems and low marine survival. We argue that a fundamental strategy should be to ensure that the highest number of wild smolts in the best condition leave from rivers and coastal areas to the ocean. There is great scope for water quality, river regulation, migration barriers, and physical river habitat improvements.
3. Maintenance of genetic integrity and diversity of wild populations by eliminating interbreeding with escaped farmed salmon, eliminating poorly planned stocking, and reducing impacts that reduce population sizes to dangerously low levels will support the ability of Atlantic salmon to adapt to changing environments. Reducing the impacts from aquaculture and other human activities in coastal areas can greatly increase marine survival in affected areas.
4. As most of the threats to wild salmon are the result of human activities, a focus on human dimensions and improved communication, from scientific and management perspectives, needs to be increasingly emphasized. When political and social will are coupled with adequate resources, managers often have the tools to mitigate many of the threats to wild salmon.

     

Variation in wind and piscivorous predator fields affecting the survival of Atlantic salmon,Salmo salar,in the Gulf of Maine

Abstract Observations relevant to the North American stock complex of Atlantic salmon, Salmo salar L., suggest that marine mortality is influenced by variation in predation pressure affecting post‐smolts during the first months at sea. This hypothesis was tested for Gulf of Maine (GOM) stocks by examining wind pseudostress and the distribution of piscivorous predator fields potentially affecting post‐smolts. Marine survival has declined over recent decades with a change in the direction of spring winds, which is likely extending the migration of post‐smolts by favouring routes using the western GOM. In addition to changes in spring wind patterns, higher spring sea surface temperatures have been associated with shifting distributions of a range of fish species. The abundance of several pelagic piscivores, which based on their feeding habits may predate on salmon post‐smolts, has increased in the areas that serve as migration corridors for post‐smolts. In particular, populations of silver hake, Merluccius bilinearis (Mitchell), red hake, Urophycis chuss (Walbaum), and spiny dogfish, Squalus acanthias L., increased in size in the portion of the GOM used by post‐smolts. Climate variation and shifting predator distributions in the GOM are consistent with the predator hypothesis of recruitment control suggested for the stock complex.     

Influence of climate and abundance on migration timing of adult Atlantic salmon (Salmo salar) among rivers in Newfoundland and Labrador

Evidence mounts for the influence of climate variability on temporal trends in the phenology of many organisms including various species of fish. Accordingly, we examined variation in adult Atlantic salmon Salmo salar run timing in thirteen Newfoundland and Labrador rivers where returns were monitored at fishways or fish‐counting fences. Run timing varied significantly among rivers with the median date of return differing by up to 5 weeks. Duration of runs was generally short with most adults returning over a period of three to 5 weeks. A mixed model analysis incorporating a first‐order autoregressive error structure was used to generalise changes in run timing among all monitored rivers. Results indicated that the median date of return has advanced by almost 12 days over a 35‐year interval from 1978 to 2012, while several individual rivers have advanced by almost 21 days. The influence of climate on median timing was evident when the simultaneous effects of both climate and salmon abundance were controlled. We found earlier runs associated with overall warmer climate conditions on the Newfoundland and Labrador Shelf. Results contrast with those from the north‐east Atlantic where Atlantic salmon are returning later in some rivers coincident with warming climate conditions.     

Behaviour and mortality of downstream migrating Atlantic salmon smolts at a small power station with multiple migration routes

Salmon smolts were released upstream of a run‐of‐river hydropower site and recaptured downstream for inspection. Descending fish behaviour through three possible migration routes (turbines, fishway, spillway) was analysed using telemetry, fyke nets and diving. Tagged smolts did not follow the main water flow; over 70% used the fishway, which received only about 10% of the flow. The turbines received about 80% of the water, but <25% of the smolts. Smolts were not fully stopped from entering the turbines by the 25‐mm bar racks. Mortality of smolts passing through the Kaplan turbines was at minimum 36%. No mortality was found in fish moving through the fishway or spillway. This shows that small and fast‐rotating Kaplan turbines can cause relatively high mortality. No mortality in alternative migration routes resulted in a total mortality for descending smolts at the hydropower station of 8.5%, emphasising the importance of providing functional alternative migration routes.     

Atlantic salmon smolts in the Irish Sea: First evidence of a northerly migration trajectory

Results from an acoustic telemetry study revealed for the first time a northerly migration route for Atlantic salmon (Salmo salar L.) smolts leaving the east coast of Ireland. Atlantic salmon smolts were tagged in spring 2019 in the Castletown and Boyne rivers. Three tagged smolts registered on disparate deep‐water offshore marine receivers as they travelled northwards out of the Irish Sea through the North Channel. One fish had migrated an estimated 250 km in a period of 32 days. The remaining two individuals were detected on receivers located off the Northern Ireland coast, further corroborating the northward migration of salmon smolts through the Irish Sea.     

Survival and behaviour of Atlantic salmon smolts passing a run‐of‐river hydropower facility with a movable bulb turbine

Downstream migration of radio‐tagged Atlantic salmon smolts, Salmo salar L., was studied in the Kinzig, Germany, to examine effects of passing a run‐of‐river hydropower station with a movable bulb turbine. Immediate mortality for smolts passing the power station was low (3%–6%), probably facilitated by a curved rack in front of the turbine and the possibility to pass over it. Mortality in the impounded stretch above the power station was also low (1.5% extra mortality compared to a control stretch). The combined mortality due to hydropower was 5%–8%, excluding delayed effects. Most smolts followed the main flow passing through the turbine area (94%). Only few used a fishway (4%) or a nearby millstream (2%). Migration speed was slowed down at the power station, but the passage only caused a short delay (average/median 8.6/1.3 hr). However, even low mortality and short delays at several power stations and reservoirs may have considerable cumulative effects.     

Diel migration pattern of Atlantic salmon (Salmo salar) and sea trout (Salmo trutta) smolts: an assessment of environmental cues

The timing of smolt migration is a key phenological trait with profound implications for individual survival during both river descent and the subsequent sea sojourn of anadromous fish. We studied relationships between the time of smolt migration, water temperature and light intensity for Atlantic salmon (Salmo salar) and sea trout (Salmo trutta). During 2006–2012, migrating smolts descending the southern Norway River Storelva were caught in a rotary screw trap located at the river mouth. The date of 50% cumulative smolt descent correlated significantly with the date when the river temperature exceeded 8°C for both Atlantic salmon and sea trout smolts. In 2010, smolts of both species were passive integrated transponder (PIT)‐tagged, and the diel timing of their migration was precisely documented. The degree of night migration decreased in both species as the river temperature rose, and at temperatures above 12–13°C, more smolts migrated during day than during night. A multinomial model was fitted for estimating temperature and species effects on probabilities of migration during night, daytime, dusk and dawn. Atlantic salmon smolts preferred migrating under lower light intensities than sea trout smolts during early, but not late spring when both species migrated during bright daylight. In accordance with the early‐season tendency to migrate at night, Atlantic salmon smolts migrated more during darker hours of the day than sea trout. In both species, smaller smolts migrated under dark conditions than during light conditions. Most of the findings on thermal, light and temporal effects on the observed smolt migration pattern can be explained as adaptations to predation avoidance.     

The effects of flow on Atlantic salmon (Salmo salar) redd distribution in a UK chalk stream between 1980 and 2015

Atlantic salmon are an ecologically and economically important migratory fish in the UK, whose stocks have been declining over the past 30 years. Future climate and water use changes have the potential to alter the reproductive behaviour and distribution of salmon within a river, by restricting times and ability to access suitable spawning areas. As the survival of emergent salmon juveniles is density dependent, understanding how climate‐driven changes in flow affect the location of salmon redds is important for future conservation efforts. This study examined how flow conditions affect the distribution of redds within a UK chalk stream, the river Frome in Dorset. Sixteen years of redd distribution and flow data between 1980 and 2015 were analysed using linear mixed‐effects modelling. Generally, highest redd densities occurred within middle reaches of the main river. Mean flow during the river Frome critical migration period (October–December) did not affect the density of redds directly but affected the relationship between redd density and distance from tidal limit: redd densities were spread more uniformly throughout the river under high flow conditions, whereas redds were more aggregated in the middle river reaches under low flow conditions. Together, these findings suggest that access to upstream spawning grounds was limited under low flow conditions, which could have negative repercussions on juvenile survival. This study has revealed the distribution of redds along the river Frome for the first time and provided a basis for further study into the effects of redd distribution on subsequent juvenile life stages.     

Upstream migration of Atlantic salmon at a power station on the River Nidelva, Southern Norway

The upstream migration of 17 radio-tagged adult Atlantic salmon, Salmo salar L., past hydroelectric developments on the River Nidelva, Southern Norway, was examined. Salmon migrated quickly from the site of release in the lower part of the river up to the tunnel outlet of Rygene power station, but were substantially delayed at the outlet. The salmon stayed in the outlet area for 0–71 days (median = 20), and mainly took up a position inside the dark power station tunnel. Water discharge in the tunnel was 57–176 m³ s⁻¹, while residual flow in the river between the outlet and the dam 2.5 km further upstream was 3 m³ s⁻¹. Ten salmon passed the outlet and entered the residual flow stretch, but none passed the dam. Six of the 10 salmon returned to the tunnel outlet. No major migration barriers were identified in the residual flow stretch, suggesting lack of motivation among the salmon to migrate due to either low water discharge compared with the main river, or several minor migration barriers along the river stretch.     

A test of the cumulative effect of river weirs on downstream migration success,speed and mortality of Atlantic salmon (Salmo salar) smolts: An empirical study

This study investigated the cumulative impact of weirs on the downstream migration of wild Atlantic salmon (Salmo salar) smolts in the River Foyle, Northern Ireland. In spring of 2013 fish were released in two tributaries of similar length; one tributary (impacted) had seven low‐head weirs along the migration pathway and the other was devoid of such structures (un‐impacted). Salmon smolts fitted with acoustic transmitters were monitored via a passive acoustic telemetry array during downstream migration. In 2014 the study was repeated only in the impacted tributary. Overall freshwater survival rates were high (>94%). There was no significant difference in mortality, movement pattern, delay or travel speeds between rivers or between years at any phase of migration. Escapement of salmon smolts through Lough Foyle (a marine sea lough) to the open ocean was low, approximately 18% in each year. Escapement did not differ between impacted and un‐impacted rivers. This study showed no postpassage effects of weirs on mortality, migration speed or escapement of downstream migrating smolts. This suggests that the elevated mortality at low‐head obstacles described in other studies is not inevitable in all river systems. Migration through rivers with natural riffle‐pool migration may result in similar effects as those from low‐head weirs. Causes of apparent high mortality in the early part of marine migration in this study, are unknown; however similar studies have highlighted the impact of fish predators on smolts.     

Temperature-mediated en route migration mortality and travel rates of endangered Snake River sockeye salmon

Abstract  Conservation efforts for endangered Snake River sockeye salmon ( Oncorhynchus nerka ) have been hindered by high en route adult mortality during their ∼1450 km freshwater spawning migration. Identifying causal factors for this mortality has been difficult given very small (often <10 fish) annual returns in recent decades. However, several hundred hatchery-bred fish returned in 2000 and we intercepted and radio-tagged 31 in mid-migration to monitor behaviours and survival. All fish initially migrated at similar rates, but later-timed fish eventually slowed migration and were far more likely to be unsuccessful. Late-season mortality was strongly associated with water temperatures near tolerance thresholds (21–24 °C). The data also suggest increased risk for fish in poor initial condition (i.e., with injuries or parasites) and probable recent selection against late-timed salmon. Results parallel temperature- and condition-related adult mortality in Columbia and Fraser River sockeye salmon populations and demonstrate the potential vulnerability of marginal southern populations to regional climate warming.     

The effect of physiological and environmental conditions on smolt migration in Atlantic salmon Salmo salar

Hydropower development has negatively influenced Atlantic salmon (Salmo salar) populations. Compensatory hatchery‐rearing programmes exist, but released fish suffer from high mortality that may be related to the lack of experience from natural environments in hatchery‐reared smolts and their large body size and high energetic state. Here, we used acoustic telemetry to test how body size, energetic state, and the environmental conditions of the river affect migration in hatchery‐reared smolts. The study was conducted in three consecutive years between 2011 and 2013 in the lower part of the River Umeälven, Sweden. For individual fish, there was no effect of body size but the energetic state of the fish had a negative effect on sea entry. The most important factor affecting sea entry rate was the water discharge in the old river bed that differed among years. Smolts were more likely to enter the sea in years when the discharge was high or when the discharge increased substantially shortly after release. Hatchery‐reared fish had higher migration speed at a slower flowing section compared with a faster flowing section, which was likely a result of large hesitation to enter the rapid section. The increase in water discharge led to an increase in fish migration speed disproportional to the increase in water velocity. Our results highlight the importance of water discharge for the smolts during smolt migration, and we argue that concern should be given to migrating fish when managing regulated rivers.     

Vertical movements of Atlantic salmon post-smolts relative to measures of salinity and water temperature during the first phase of the marine migration

Abstract  The migratory behaviour of hatchery-reared Atlantic salmon, Salmo salar L., post-smolts during the first phase of the marine migration was examined to assess their susceptibility to salmon lice, Lepeophtheirus salmonis (Krøyer), infestations. Swimming depths of eight post-smolts relative to the measured salinity and temperature were monitored for an average of 11.4 h following release outside the mouth of the River Eio using depth sensitive acoustic transmitters. Vertical salinity and temperature distributions were simultaneously recorded along the migratory route. Mean swimming depth was 1.7 m (individual mean 0.5–2.1 m). There was no overall preference among all the post-smolts for specific salinity concentrations. Typically post-smolts migrated the majority (68%) of their time at salinities <20 psu (brackish water), and as a result outside the reported salinity tolerances of sea lice. Furthermore, post-smolts chose the warmest water layer during their coastal migration.