Turnover of low molecular weight dissolved organic C (DOC) and microbial C exhibit different temperature sensitivities in Arctic tundra soils

Polar ecosystems are currently experiencing some of the fastest rates of climate warming. An increase in soil temperature in High Arctic regions may stimulate soil permafrost melting and microbial activity, thereby accelerating losses of greenhouse gases. It is therefore important to understand the factors regulating the rates of C turnover in polar soils. Consequently, our aims were to: (1) assess the concentration of low molecular weight (MW) dissolved organic carbon (DOC) in soil, (2) to investigate the temperature-dependent turnover of specific low MW compounds, and (3) to analyse the influence of substrate concentration on C cycling. Microbial mineralisation of labile low MW DOC in two High Arctic tundra soils was investigated using soil solutions spiked with either ¹⁴C-labelled glucose or amino acids. Spiked solutions were added to the top- and sub-soil from two ecosystem types (lichen and Carex dominated tundra), maintained at three temperatures (4–20 °C), and their microbial mineralisation kinetics monitored. ¹⁴CO₂ evolution from the tundra soils in response to ¹⁴C-glucose and -amino acid addition could best be described by a double first order exponential kinetic equation with rate constants k₁ and k₂. Both forms of DOC had a short half-life (t_1/2) in the pool of microbial respiratory substrate (t_1/2 = 1.07 ± 0.10 h for glucose and 1.63 ± 0.14 h for amino acids; exponential coefficient k₁ = 0.93 ± 0.07 and 0.64 ± 0.06 h^?1 respectively) whilst the second phase of mineralisation, assumed to be C that had entered the microbial biomass, was much slower (average k₂ = 1.30 × 10^?3 ± 0.49 × 10^?4 h^?1). Temperature had little effect on the rate of mineralisation of ¹⁴C used directly as respiratory substrate. In contrast, the turnover rate of the ¹⁴C immobilized in the microbial biomass prior to mineralisation was temperature sensitive (k₂ values of 0.99 × 10^?3 h^?1 and 1.66 × 10^?3 h^?1 at 4 and 20 °C respectively). Concentration-dependent glucose and amino acid mineralisation kinetics of glucose and amino acids (0–10 mM) were best described using Michaelis–Menten kinetics; there was a low affinity for both C substrates by the microbial community (K_m = 4.07 ± 0.41 mM, V_max = 0.027 ± 0.005 mmol kg^?1 h^?1). In conclusion, our results suggest that in these C limiting environments the flux of labile, low MW DOC through the soil solution is extremely rapid and relatively insensitive to temperature. In contrast, the turnover of C incorporated into higher molecular weight microbial C pools appears to show greater temperature sensitivity.     

Effects of freeze–thaw cycles on microarthropods and nutrient availability in a sub-Arctic soil

It is predicted that Arctic regions may experience an increase in mean temperature in the future. This will affect the frequency of severe climatic events such as summer droughts and freeze–thaw cycles. In order to understand the impact of recurring freezing and thawing on soil organisms and their environment, intact plant–soil samples from the sub-Arctic were subjected to a series of such events. Springtail and mite species composition and abundance were monitored at intervals throughout the experiment. Furthermore, nutrient content and mobilisation in the soil and soil microbial biomass and nutrient content were examined.There was no conclusive evidence that recurring freeze–thaw events had a negative effect on the investigated soil faunal groups, and the treatment even seemed to stimulate the abundance of Acaridida. Respiration of soil subjected to 16 freeze–thaw cycles was low when kept at −2 °C and high when kept at +2 °C, indicating rapid response of microbial activity even after long exposure to low and fluctuating temperatures. Oribatida and Gamasida displayed a higher abundance in controls kept at −2 °C for up to 80 days, compared to controls at +2 °C and the freeze–thaw treatment. The Collembola were unaffected by the temperature treatments, but increased in abundance over time. The microbial C:N ratio increased after 40 days at −2 °C, indicating a higher degree of fungal dominance and lower tolerance of bacteria to constant freezing, but not to freeze–thaw. The decline in inorganic and microbial P during the experiment, and the proportionally stronger decrease of inorganic and microbial P than N in frozen soil compared to +2 °C soil, suggests that P is affected more than N mineralisation by freezing.     

Temperature and substrate effects on C & N mineralization and microbial community function of soils from a hybrid poplar chronosequence

Substrate input as well as climatic factors affect C and N cycling and microbial properties in forest soils. We used a microcosm approach to investigate the response of CO₂ efflux, net N mineralization, and microbial community-level physiological profile (CLPP) to temperature (5 vs. 15 °C) and substrate (with and without sucrose addition) addition in surface mineral soils collected from 4-, 6-, 13-, and 15-year old (ages in 2007) hybrid poplar (Populus deltoides × Populus × petrowskyana var. Walker) stands in northern Alberta. In the early stage of incubation (0–2 h), CO₂ efflux was higher at 5 °C than at 15 °C with little effect from substrate addition, while 24 h after the addition of substrate, CO₂ efflux became higher under the 15 °C incubation. After 72 h incubation, temperature and substrate addition effects on CO₂ efflux subsided and CO₂ efflux rates tended to converge among the treatments. Net N mineralization was significantly affected by substrate addition and stand age, while rates of net ammonification were higher at 5 °C than at 15 °C. Net N mineralization occurred without sucrose addition while net immobilization occurred with sucrose addition. The soil from the youngest stand had the lowest N mineralization rate among the stands for each corresponding substrate-incubation temperature treatment. We used Ecoplates from Biolog™ to study sole-carbon-source-utilization profiles of microbial communities at the end of the incubation. Principal component analysis of C utilization data separated microbial communities with respect to substrate addition, incubation temperature and stand age. Our data showed that organic matter mineralization and microbial substrate utilization were affected by incubation temperature, substrate availability and stand age, indicating that the responses of microbial communities in the studied hybrid poplar plantations to temperature changes were strongly mediated by labile C availability and stand development.     

Effect of warming on the temperature dependence of soil respiration rate in arctic,temperate and tropical soils

We examined the response of the temperature coefficient (Q₁₀) for soil respiration rate to changes in environmental temperature through a laboratory incubation experiment. Soil samples were collected from three climatic areas: arctic (Svalbard, Norway), temperate (Tsukuba, Japan) and tropical (Pasoh, Malaysia). The arctic and temperate soils were incubated at 8 °C (control), 12 °C (4 °C warming) and 16 °C (8 °C warming) for 17 days. The tropical soil was incubated at 16 °C (8 °C cooling), 24 °C (control) and 32 °C (8 °C warming). Before and after the incubation experiment, the temperature dependence of soil microbial respiration was measured using an open-airflow method with IRGA by changing the temperature in a water bath. The initial Q₁₀ before the incubation experiment was larger in the soils from higher latitudes: 3.4 in the arctic soil, 2.9 in the temperate soil, and 2.1 in the tropical soil. The response of the microbial respiration rate to change in temperature differed among the three soil types. The temperature dependence of respiration rate in the arctic soil did not change in response to warming by 4 and 8 °C with a Q₁₀ of about 3. On the other hand, the Q₁₀ in the temperate soil decreased with increasing incubation temperature: from 2.8 in soils incubated at 8 °C to 2.5 at 12 °C and 2.0 at 16 °C. In the tropical soil, the Q₁₀ was not changed even by the 8 °C warming with a value of 2.1, whereas the Q₁₀ was increased from 2.1 to 2.7 by the 8 °C cooling. These results suggest that the response of microbial respiration to climatic warming may differ between soils from different latitudes.     

Effects of trifluralin on soil carbon mineralization at different temperature conditions

Trifluralin is a herbicide intensively used in Turkish cotton agriculture. The recommended field dose [(RFD), 480 g active ingredient l^?1], 2 × RFD, 4 × RFD and 6 × RFD of this herbicide were added to virgin (previously no trifluralin applied) and cotton field soils (previously trifluralin applied) from a district (Yumurtal?k, Adana) under Mediterranean climate conditions in order to determine their effects on soil microbial activity as measured by carbon mineralization at the different temperature conditions (20 °C, 25 °C and 30 °C). C mineralization of all samples was determined by the CO₂ respiration method over 30 days (20 °C, 25 °C and 30 °C at constant moist). The ratio (%) of carbon mineralization at all doses of cotton field soil at 30 °C was significantly higher than all other field dose–temperature combinations (P < 0.001). Based on these results, trifluralin is used as a carbon source by soil microorganisms. The herbicide trifluralin was degraded completely in the cotton field but a small fraction remained in the virgin field. This result can be explained by the cotton field soil having both more active microbial populations and more microorganisms adapted to the trifluralin applications than the virgin field.     

Effect of freezing on soil nitrogen mineralization under different plant communities in a semi-arid area during a non-growing season

The influences of winter climate on terrestrial ecosystem processes have been the subject of growing attention, which is necessary to make the predictions about ecological responses to global warming in the future. However, little information can be found about the impacts of a large range of soil temperature fluctuation (e.g. −10 to 5 °C) over winter on the soil nitrogen (N) dynamics in the field. In the present study, we employed an intact soil core in situ incubation technique, and measured soil N mineralization and nitrification rates under three plant communities, i.e. a grassland, a shrub and a plantation, during the non-growing season (October 2004–April 2005) in Inner Mongolia, China. Our results demonstrate the significant effects of different plant communities on soil net N mineralization and the great temporal variations of soil N dynamics during the incubation period. The mean soil net N mineralization rates were 0.93, 0.77 and −1.28 mg N m⁻² d⁻¹, respectively, in the grassland, shrub and plantation. The mean soil NH₄⁺-N in the three plant communities declined by 40%, but the mean soil NO₃⁻-N increased by 190% by the end of the incubation compared with their initial concentrations at the beginning of incubation. The differences in plant communities significantly affected their soil N mineralization rates, accumulations and turnover rates, which followed the order: grassland > shrub > plantation. During the winter time, the studied soils experienced the three phases consisting of mild freezing (−7 to −2 °C soil), deep freezing (approximately −10 °C soil) and freeze–thaw (−2 to 5 °C soil). The results suggest that temporal variations of soil N mineralization are positively affected by the soil temperature and the soil nitrification is dominant in the N transformation process during the non-growing season. Our study indicates that the soil N mineralization over winter can make a substantial contribution to the mineral N pool that plants are able to utilize in the upcoming spring, but may also pose a great risk of mineral N leaching loss if great rainfalls occur during spring and early summer.     

Microbial mineralization of biochar and wheat straw mixture in soil: A short-term study

A short-term incubation study was carried out to investigate the effect of biochar addition to soil on CO₂ emissions, microbial biomass, soil soluble carbon (C) nitrogen (N) and nitrate–nitrogen (NO₃–N). Four soil treatments were investigated: soil only (control); soil + 5% biochar; soil + 0.5% wheat straw; soil + 5% biochar + 0.5% wheat straw. The biochar used was obtained from hardwood by pyrolysis at 500 °C. Periodic measurements of soil respiration, microbial biomass, soluble organic C, N and NO₃–N were performed throughout the experiment (84 days). Only 2.8% of the added biochar C was respired, whereas 56% of the added wheat straw C was decomposed. Total net CO₂ emitted by soil respiration suggested that wheat straw had no priming effect on biochar C decomposition. Moreover, wheat straw significantly increased microbial C and N and at the same time decreased soluble organic N. On the other hand, biochar did not influence microbial biomass nor soluble organic N. Thus it is possible to conclude that biochar was a very stable C source and could be an efficient, long-term strategy to sequester C in soils. Moreover, the addition of crop residues together with biochar could actively reduce the soil N leaching potential by means of N immobilization.     

Shifts in ascomycete community of bisolarizated substrate infested with Fusarium oxysporum f. sp. conglutinans and F. oxysporum f. sp. basilici by PCR-DGGE

Substrate samples were artificially infested with Fusarium oxysporum f. sp. conglutinans (FOC) and F. oxysporum f. sp. basilici (FOB) in order to evaluate the shift in fungal population by using culture dependent and culture independent methods. Solarization was carried out with transparent polyethylene film during a summer period on a greenhouse located in Northern Italy, in combination or not with Brassica carinata defatted seed meals and/or compost. Biosolarization treatment was carried out in a growth chamber by heating the substrate for 7 and 14 days at optimal (55–52 °C for 6 h, 50–48 °C for 8 h and 47–45 °C for 10 h/day) and sub-optimal (50–48 °C for 20 h, 45–43 °C for 8 h and 40–38 °C for 10 h/day) temperatures. Plate counts and polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE) analyses were performed to evaluate the effect of biosolarization on the microbial population. The abundance of FOC and FOB were reduced as a consequence of biosolarization approach, while bacterial population (total aerobic mesophilic bacteria and Pseudomonas spp.) were higher compared to control samples during the experiment. PCR-DGGE fingerprints of the ascomycete community obtained from DNA directly extracted from infested substrate samples showed that the use of organic amendments increased the similarity of the fungal population.     

The effect of glyphosate on soil microbial activity,microbial community structure,and soil potassium

The herbicide, glyphosate [N-(phosphonomethyl) glycine] is extensively used worldwide. Long-term use of glyphosate can cause micronutrient deficiency but little is known about potassium (K) interactions with glyphosate. The repeated use of glyphosate may create a selection pressure in soil microbial communities that could affect the nutrient dynamics such as K. The objective of this study was to determine the effect of single or repeated glyphosate applications on microbial and K properties of soils. A 54 day incubation study (Exp I) had a 3 × 5 factorial design with 3 soils (silt loam: fine, illitic, mesic Aeric Epiaqualf) of similar physical and chemical characteristics, that varied in long-term glyphosate applications (no, low, and high glyphosate field treatments) and five glyphosate rates (0, 0.5×, 1×, 2×, and 3× recommended field rates applied once at time zero). A second 6 month incubation study (Exp II) had a 3 × 3 factorial design with three soils (as described above) and three rates of glyphosate (0, 1×, and 2× recommended field application rates applied monthly). For each study microbial properties [respiration; community structure measured by ester linked fatty acid methyl ester (EL-FAME) analysis and microbial biomass K] and K fractions (exchangeable and non-exchangeable) were measured periodically. For Exp I, glyphosate significantly increased microbial respiration that was closely related to glyphosate application rate, most notably in soils with a history of receiving glyphosate. For Exp II, there was no significant effect of repeated glyphosate application on soil microbial structure (EL-FAME) or biomass K. We conclude that glyphosate: (1) stimulates microbial respiration particularly on soils with a history of glyphosate application; (2) has no significant effect on functional diversity (EL-FAME) or microbial biomass K; and (3) does not reduce the exchangeable K (putatively available to plants) or affect non-exchangeable K. The respiration response in soils with a long-term glyphosate response would suggest there was a shift in the microbial community that could readily degrade glyphosate but this shift was not detected by EL-FAME.     

Respiratory substrate availability plays a crucial role in the response of soil respiration to environmental factors

We examined the response of the temperature coefficient (Q₁₀) for soil respiration to changes in soil temperature and soil moisture through a laboratory incubation experiment. Two types of soils differing in vegetation and moisture status were collected and incubated under two temperatures (10 and 30 °C) and two soil moisture regimes (35 and 75% of water holding capacity, WHC) for 5 weeks. Before and after the incubation experiment, the temperature coefficient of soil respiration was measured using soda-lime method by changing temperature in a water bath. For both soils, the mean Q₁₀ values of the respiration rate were 2.0 in the 30 °C and 2.3 in the 10 °C soil treatments. Higher temperature with lower soil moisture treatment significantly decreased the Q₁₀ value, whereas lower temperature with higher soil moisture treatment significantly enhanced the Q₁₀ value (ANOVA, p < 0.05). These results indicate that soils became less sensitive to temperature when incubated under higher temperature with higher moisture conditions, and more sensitive in lower temperature with higher moisture conditions.There was a significant correlation (r² = 0.67, p < 0.05) between water-soluble carbon (WSC) and soil respiration rate. However, the correlation between soil respiration rate and microbial biomass carbon (MBC) was weak (r² = 0.27, p > 0.05). Although incubation temperature and moisture accounted for 40 and 29% (as r² × 100%), respectively, of variations in Q₁₀, soil water-soluble carbon content alone could have explained 79% of the variation, indicating that the availability of respiratory substrate, rather than the pool of soil microorganisms, played a crucial role in the response of the temperature coefficient to environmental factors. These results suggest that biotic factors should also be taken into consideration when using the Q₁₀ function to predict the response of soil respiration to global warming.     

Dynamics of litter carbon turnover and microbial abundance in a rye detritusphere

Factors determining C turnover and microbial succession at the small scale are crucial for understanding C cycling in soils. We performed a microcosm experiment to study how soil moisture affects temporal patterns of C turnover in the detritusphere. Four treatments were applied to small soil cores with two different water contents (matric potential of ?0.0063 and ?0.0316 MPa) and with or without addition of ¹³C labelled rye residues (δ¹³C=299‰), which were placed on top. Microcosms were sampled after 3, 7, 14, 28, 56 and 84 days and soil cores were separated into layers with increasing distance to the litter. Gradients in soil organic carbon, dissolved organic carbon, extracellular enzyme activity and microbial biomass were detected over a distance of 3 mm from the litter layer. At the end of the incubation, 35.6% of litter C remained on the surface of soils at ?0.0063 MPa, whereas 41.7% remained on soils at ?0.0316 MPa. Most of the lost litter C was mineralised to CO₂, with 47.9% and 43.4% at ?0.0063 and ?0.0316 MPa, respectively. In both treatments about 6% were detected as newly formed soil organic carbon. During the initial phase of litter decomposition, bacteria dominated the mineralisation of easily available litter substrates. After 14 days fungi depolymerised more complex litter compounds, thereby producing new soluble substrates, which diffused into the soil. This pattern of differential substrate usage was paralleled by a lag phase of 3 days and a subsequent increase in enzyme activities. Increased soil water content accelerated the transport of soluble substrates, which influenced the temporal patterns of microbial growth and activity. Our results underline the importance of considering the interaction of soil microorganisms and physical processes at the small scale for the understanding of C cycling in soils.     

Effects of soil conditions and drought on egg hatching and larval survival of the clover root weevil (Sitona lepidus)

Soil-dwelling insect herbivores are significant pests in many managed ecosystems. Because eggs and larvae are difficult to observe, mathematical models have been developed to predict life-cycle events occurring in the soil. To date, these models have incorporated very little empirical information about how soil and drought conditions interact to shape these processes. This study investigated how soil temperature (10, 15, 20 and 25 °C), water content (0.02 (air dried), 0.10 and 0.25 g g^?1) and pH (5, 7 and 9) interactively affected egg hatching and early larval lifespan of the clover root weevil (Sitona lepidus Gyllenhal, Coleoptera: Curculionidae). Eggs developed over 3.5 times faster at 25 °C compared with 10 °C (hatching after 40.1 and 11.5 days, respectively). The effect of drought on S. lepidus eggs was investigated by exposing eggs to drought conditions before wetting the soil (2–12 days later) at four temperatures. No eggs hatched in dry soil, suggesting that S. lepidus eggs require water to remain viable. Eggs hatched significantly sooner in slightly acidic soil (pH 5) compared with soils with higher pH values. There was also a significant interaction between soil temperature, pH and soil water content. Egg viability was significantly reduced by exposure to drought. When exposed to 2–6 days of drought, egg viability was 80–100% at all temperatures but fell to 50% after 12 days exposure at 10 °C and did not hatch at all at 20 °C and above. Drought exposure also increased hatching time of viable eggs. The effects of soil conditions on unfed larvae were less influential, except for soil temperature which significantly reduced larval longevity by 57% when reared at 25 °C compared with 10 °C (4.1 and 9.7 days, respectively). The effects of soil conditions on S. lepidus eggs and larvae are discussed in the context of global climate change and how such empirically based information could be useful for refining existing mathematical models of these processes.     

Microbial utilization and mineralization of [14C]glucose added in six orders of concentration to soil

The substrate availability for microbial biomass (MB) in soil is crucial for microbial biomass activity. Due to the fast microbial decomposition and the permanent production of easily available substrates in the rooted top soil mainly by plants during photosynthesis, easily available substrates make a very important contribution to many soil processes including soil organic matter turnover, microbial growth and maintenance, aggregate stabilization, CO₂ efflux, etc. Naturally occurring concentrations of easily available substances are low, ranging from 0.1 μM in soils free of roots and plant residues to 80 mM in root cells. We investigated the effect of adding ¹⁴C-labelled glucose at concentrations spanning the 6 orders of magnitude naturally occurring concentrations on glucose uptake and mineralization by microbial biomass. A positive correlation between the amount of added glucose and its portion mineralized to CO₂ was observed: After 22 days, from 26% to 44% of the added 0.0009 to 257 μg glucose C g^?1 soil was mineralized. The dependence of glucose mineralization on its amount can be described with two functions. Up to 2.6 μg glucose C g^?1 soil (corresponds to 0.78% of initial microbial biomass C), glucose mineralization increased with the slope of 1.8% more mineralized glucose C per 1 μg C added, accompanied by an increasing incorporation of glucose C into MB. An increased spatial contact between micro-organisms and glucose molecules with increasing concentration may be responsible for this fast increase in mineralization rates (at glucose additions <2.6 μg C g^?1). At glucose additions higher than 2.6 μg C g^?1 soil, however, the increase of the glucose mineralization per 1 μg added glucose was much smaller as at additions below 2.6 μg C g^?1 soil and was accompanied by decreasing portions of glucose ¹⁴C incorporated into microbial biomass. This supports the hypothesis of decreasing efficiency of glucose utilization by MB in response to increased substrate availability in the range 2.6–257 μg C g^?1 (=0.78–78% of microbial biomass C). At low glucose amounts, it was mainly stored in a chloroform-labile microbial pool, but not readily mineralized to CO₂. The addition of 257 μg glucose C g^?1 soil (0.78 μg C glucose μg^?1 C micro-organisms) caused a lag phase in mineralization of 19 h, indicating that glucose mineralization was not limited by the substrate availability but by the amount of MB which is typical for 2nd order kinetics.     

Micro-topographic patterns unravel controls of soil water and temperature on soil respiration in three Siberian tundra systems

Spatial and temporal patterns of soil respiration rates and controlling factors were investigated in three wet arctic tundra systems. In situ summer season carbon dioxide fluxes were measured across a range of micro-topographic positions in tussock tundra, wet sedge tundra, and low-centre polygonal tundra, at two different latitudes on the Taimyr Peninsular, central Siberia. Measurements were carried out by means of a multi-channel gas exchange system operating in continuous-flow mode.Measured soil respiration rates ranged from 0.1 g CO₂-C m^?2 d^?1 to 3.9 g CO₂-C m^?2 d^?1 and rate differences between neighbouring sites in the micro-topography (microsites) were larger than those observed between different tundra systems. Statistical analysis identified position of the water table and soil temperature at shallow depths to be common controls of soil respiration rates across all microsites, with each of these two factors explaining high proportions of the observed variations.Modelling of the response of soil respiration to soil temperature and water table for individual microsites revealed systematic differences in the response to the controlling factors between wet and drier microsites. Wet microsites – with a water table position close to the soil surface during most of the summer – showed large soil respiration rate changes with fluctuations of the water table compared to drier microsites. Wet microsites also showed consistently higher temperature sensitivity and a steeper increase of temperature sensitivity with decreasing temperatures than drier sites. Overall, Q₁₀ values ranged from 1.2 to 3.4. The concept of substrate availability for determining temperature sensitivity is applied to reconcile these systematic differences. The results highlight that soil respiration rates in wet tundra are foremost controlled by water table and only secondarily by soil temperature. Wet sites have a larger potential for changes in soil respiration rates under changing environmental conditions, compared to drier sites.It is concluded that understanding and forecasting gaseous carbon losses from arctic tundra soils and its implication for ecosystem-scale CO₂ fluxes and soil organic matter dynamics require good knowledge about temporal and spatial patterns of soil water conditions. The water status of tundra soils can serve as a control on the temperature sensitivity of soil respiration.     

Effect of paclobutrazol on microbial biomass,respiration and cellulose decomposition in soil

Paclobutrazol is a plant growth regulator largely utilized in mango cultivation and usually applied directly to soil. The aim of this study was to examine the effect of paclobutrazol on soil microbial biomass, soil respiration and cellulose decomposition in Brazilian soils under laboratory conditions. Soil samples were collected from fields with and without a reported history of paclobutrazol application. A solution of paclobutrazol (8 mg of active ingredient kg^?1 of soil) was added to soils, which were then incubated at 28 °C for 30 days. Paclobutrazol decreased soil microbial biomass, soil respiration and cellulose decomposition in soil with and without a report of paclobutrazol application, while significant increase was observed in the respiratory quotient (qCO₂). Our results show that the soil microbiological attributes were negatively affected by paclobutrazol in short-term experiment.     

Does repeated burial of skeletal muscle tissue (Ovis aries) in soil affect subsequent decomposition?

The repeated introduction of an organic resource to soil can result in its enhanced degradation. This phenomenon is of primary importance in agroecosystems, where the dynamics of repeated nutrient, pesticide, and herbicide amendment must be understood to achieve optimal yield. Although not yet investigated, the repeated introduction of cadaveric material is an important area of research in forensic science and cemetery planning. It is not currently understood what effects the repeated burial of cadaveric material has on cadaver decomposition or soil processes such as carbon mineralization. To address this gap in knowledge, we conducted a laboratory experiment using ovine (Ovis aries) skeletal muscle tissue (striated muscle used for locomotion) and three contrasting soils (brown earth, rendzina, podsol) from Great Britain. This experiment comprised two stages. In Stage I skeletal muscle tissue (150 g as 1.5 g cubes) was buried in sieved (4.6 mm) soil (10 kg dry weight) calibrated to 60% water holding capacity and allowed to decompose in the dark for 70 days at 22 °C. Control samples comprised soil without skeletal muscle tissue. In Stage II, soils were weighed (100 g dry weight at 60% WHC) into 1285 ml incubation microcosms. Half of the soils were designated for a second tissue amendment, which comprised the burial (2.5 cm) of 1.5 g cube of skeletal muscle tissue. The remaining half of the samples did not receive tissue. Thus, four treatments were used in each soil, reflecting all possible combinations of tissue burial (+) and control (−). Subsequent measures of tissue mass loss, carbon dioxide-carbon evolution, soil microbial biomass carbon, metabolic quotient and soil pH show that repeated burial of skeletal muscle tissue was associated with a significantly greater rate of decomposition in all soils. However, soil microbial biomass following repeated burial was either not significantly different (brown earth, podsol) or significantly less (rendzina) than new gravesoil. Based on these results, we conclude that enhanced decomposition of skeletal muscle tissue was most likely due to the proliferation of zymogenous soil microbes able to better use cadaveric material re-introduced to the soil.     

Soil organic matter in soil depth profiles: Distinct carbon preferences of microbial groups during carbon transformation

This study investigates how carbon sources of soil microbial communities vary with soil depth. Microbial phospholipid fatty acids (PLFA) were extracted from 0–20, 20–40 and 40–60 cm depth intervals from agricultural soils and analysed for their stable carbon isotopes (δ¹³C values). The soils had been subjected to a vegetation change from C3 (δ¹³C≈?29.3‰) to C4 plants (δ¹³C≈?12.5‰) 40 years previously, which allowed us to trace the carbon flow from plant-derived input (litter, roots, and root exudates) into microbial PLFA. While bulk soil organic matter (SOM) reflected ≈12% of the C4-derived carbon in top soil (0–20 cm) and 3% in deeper soil (40–60 cm), the PLFA had a much higher contribution of C4 carbon of about 64% in 0–20 cm and 34% in 40–60 cm. This implies a much faster turnover time of carbon in the microbial biomass compared to bulk SOM. The isotopic signature of bulk SOM and PLFA from C4 cultivated soil decreases with increasing soil depth (?23.7‰ to ?25.0‰ for bulk SOM and ?18.3‰ to ?23.3‰ for PLFA), which demonstrates decreasing influence of the isotopic signature of the new C4 vegetation with soil depth. In terms of soil microbial carbon sources this clearly shows a high percentage of C4 labelled and thus young plant carbon as microbial carbon source in topsoils. With increasing soil depth this percentage decreases and SOM is increasingly used as microbial carbon source. Among all PLFA that were associated to different microbial groups it could be observed that (a) depended on availability, Gram-negative and Gram-positive bacteria prefer plant-derived carbon as carbon source, however, (b) Gram-positive bacteria use more SOM-derived carbon sources while Gram-negative bacteria use more plant biomass. This tendency was observed in all three-depth intervals. However, our results also show that microorganisms maintain their preferred carbon sources independent on soil depth with an isotopic shift of 3–4‰ from 0–20 to 40–60 cm soil depth.     

Addition of activated switchgrass biochar to an aridic subsoil increases microbial nitrogen cycling gene abundances

It has been demonstrated that soil amended with biochar, designed specifically for use as a soil conditioner, results in changes to the microbial populations that reside therein. These changes have been reflected in studies measuring variations in microbial activity, biomass, and community structure. Despite these studies, very few experiments have been performed examining microbial genes involved in nutrient cycling processes. Given the paucity of research in this area, we designed a 6 month study in a Portneuf subsoil treated with three levels (1%, 2%, and 10% w/w ratio) of a biochar pyrolyzed from switchgrass (Panicum virgatum) at 350 °C and steam activated at 800 °C to measure the abundances of five genes involved in N cycling. Gene abundances were measured using qPCR, with relative abundances of these genes calculated based on measurement of the 16S rRNA gene. At the end of the 6 month study, all measured genes showed significantly greater abundances in biochar amended treatments as compared to the control. In soil amended with 10% biochar, genes involved in nitrogen fixation (nifH), and denitrification (nirS), showed significantly increased relative abundances. Lastly, gene abundances and relative abundances correlated with soil characteristics, in particular NO₃-N, % N and % C. These results confirm that activated switchgrass-derived biochar, designed for use as a soil conditioner, has an impact on the treated soils microbial communities. We therefore suggest that future use of biochar as a soil management practice should take into account not only changes to the soil's physiochemical properties, but its biological properties as well.     

Rapid microbial phosphorus immobilization dominates gross phosphorus fluxes in a grassland soil with low inorganic phosphorus availability

Gross phosphorus (P) fluxes measured in isotopic dilution studies with ³³P labeled soils include the biological processes of microbial P immobilization, remineralization of immobilized P and mineralization of non-microbial soil organic P. In this approach, isotopic dilution due to physicochemical processes is taken into account. Our objectives were to assess the effect of inorganic P availability on gross P mineralization and immobilization in soil under permanent grassland, and to relate these fluxes to soil respiration, phosphatase activity and substrate availability as assessed by an enzyme addition method. We used soils from an 18-year-old grassland fertilization experiment near Zurich, Switzerland, that were collected in two treatments which differed only in the amount of mineral P applied (0 and 17 kg P ha⁻¹ yr⁻¹ in NK and NPK, respectively). Water-extractable phosphate was low (0.1 and 0.4 mg P kg⁻¹ soil in NK and NPK, while hexanol-labile (microbial) P was high (36 and 54 mg P kg⁻¹ soil in NK and NPK). Extremely fast microbial P uptake under P-limited conditions in NK necessitated the use of a microbial inhibitor when determining isotopic dilution due to physicochemical processes. At the higher inorganic P availability in NPK, however, isotopic exchange parameters were similar in the presence and absence of a microbial inhibitor. Phosphatase activity was higher in NK than in NPK, while soil respiration, water-extractable organic P and its enzyme-labile fraction were not affected by P status. Together, the results showed that inorganic P availability primarily affected microbial P immobilization which was the main component of gross P fluxes in both treatments. Gross P mineralization rates (8.2 and 3.1 mg P kg⁻¹ d⁻¹ for NK and NPK) during the first week were higher than reported in other studies on arable and forest soils and at least equal to isotopically exchangeable P due to physicochemical processes, confirming the importance of microbial processes in grassland soils.     

Microbial activity,community structure and potassium dynamics in rhizosphere soil of soybean plants treated with glyphosate

With the advent of glyphosate [N-(phosphonomethyl)glycine] tolerant crops, soils have now been receiving repeated applications of the herbicide for over 10 years in the Midwestern USA. There is evidence that long-term use of glyphosate can cause micronutrient deficiency but little is known about plant potassium (K) uptake interactions with glyphosate. The repeated use of glyphosate may create a selection pressure in soil microbial communities that could affect soil K dynamics and ultimately K availability for crops. Therefore, the objectives of this study were to characterize the effect of foliar glyphosate applied to GR (glyphosate resistant) soybeans on: (1) rhizosphere microbial community profiles using ester linked fatty acid methyl ester (EL-FAME) biomarkers, (2) exchangeable, non-exchangeable, and microbial K in the rhizosphere soil, and (3) concentrations of soybean leaf K. A greenhouse study was conducted in a 2 × 2 × 3 factorial design with two soil treatments (with or without long-term field applications of glyphosate), two plant treatments (presence and absence of soybean plants), and three rates of glyphosate treatments (0×, 1× at 0.87, and 2× at 1.74 kg ae ha^?1, the recommended field rate). After each glyphosate application, rhizosphere soils were sampled and analyzed for microbial community structure using ester linked fatty acid methyl ester biomarkers (EL-FAME), and exchangeable, plant tissue and microbial biomass K. Glyphosate application caused a significant decrease in the total microbial biomass in soybean rhizosphere soil that had no previous exposure to glyphosate, at 7 days after glyphosate application. However, no significant changes were observed in the overall microbial community structure. In conclusion, the glyphosate application lowered the total microbial biomass in the GR soybean rhizosphere soil that had no previous exposure to glyphosate, at 7 days after glyphosate application; caused no changes in the microbial community structure; and did not reduce the plant available K (soil exchangeable or plant tissue K).