Habitat variability in young-of-the-year winter flounder, Pseudopleuronectes americanus, in Maine estuaries

The Magnuson-Stevens Fishery Conservation and Management Act defines essential fish habitat (EFH) as “the waters and substrate necessary to fish for spawning, breeding, feeding, and growth to maturity” and the protection of nursery areas has become a key element in US Federal fisheries management. Distribution and abundance by habitat for age-0, young-of-the-year (YOY) winter flounder, Pseudopleuronectes americanus, were compared for 28 Maine estuaries to help define essential fish habitat for this life history stage. The Maine coast was divided into three broad geographic zones based upon geological features and sampled over 5 consecutive years; during April–November of 2000 in the Mid-coast, in 2001 and 2002 along the Southwest coast and in 2003 and 2004 along the Eastern Maine coast. One beam trawl (2.0 m width, 3 mm mesh) sample was collected in one to four habitats in estuaries: eelgrass (Zostera marina), kelp (Laminaria longicruris), drift algae (Phyllophora sp.) and unvegetated sand/mud. Fish were sampled every 2 weeks, April–November 2000–2004. Abundance of YOY winter flounder was greatest in Mid-coast estuaries between Casco and Penobscot Bays and was significantly lower in Southwest and Eastern estuaries. Abundance was similar across all four habitats in Mid-coast estuaries in 2000. In the other years, YOY were found in higher abundance in eelgrass relative to other habitats. A logistic regression model based on nearshore habitat characteristics was developed to predict the distribution of this species along the three broad geological zones of the Maine coast with the physical and biological variables most important in discriminating between habitats with and without individual fish identified. This logistic regression model correctly classified winter flounder 72.4% of the time based on the year, zone, the physical habitat variables (temperature, salinity, depth) and the presence–absence of submerged aquatic vegetation (eelgrass, kelp or algae). These results indicate that the type of habitat most important to YOY winter flounder varies among estuaries and EFH for this species and life stage must be defined with care.     

Landscape features determine brown trout population structure and recruitment dynamics

Variation in brown trout (Salmo trutta L.) population recruitment and structure is related to migratory patterns, which should depend on ease of access to habitats providing increased opportunity for growth. We quantified the number of young of year (YOY) as a proportion of the total number of brown trout at 24 locations on 11 streams within the Taieri catchment, New Zealand, including back calculated growth rates and emergence dates from otoliths. Locations with high absolute and relative abundance of YOY fish were related to elevation and distance from the river mainstem (habitat used by migratory fish), fish density, and the interaction between invertebrate food biomass, distance and elevation. Hatch date and growth were not related to the proportion of YOY fish, though growth was negatively correlated to total fish density. We suggest landscape features play a large role in determining recruitment and population structure. Locations at lower elevations have a high YOY density, high competition and lower growth, likely prompting out‐migration. These conditions could be created by successful return migration and spawning of large fecund fish resulting in YOY densities exceeding the habitat carrying capacity. Environmental factors, such as food availability, also played a role in determining population structure. These results provide an example of how population structure and recruitment might be controlled by local conditions and access to high growth environments in wild populations of introduced brown trout across a catchment.     

Prey abundance, channel structure and the allometry of growth rate potential for juvenile trout

Abstract  The application of a drift-foraging bioenergetic model to evaluate the relative influence of prey abundance (invertebrate drift) and habitat (e.g. pool frequency) on habitat quality for young-of-the-year (YOY) and yearling juvenile cutthroat trout, Oncorhynchus clarki (Richardson) is described. Experiments and modelling indicated simultaneous limitation of fish growth by prey abundance and habitat, where depth and current velocity limit the volume of water and prey flowing through a fish's reactive field as well as swimming costs and prey capture success. Predicted energy intake and growth increase along a depth gradient, with slower deeper pool habitat generating higher predicted growth for both YOY and yearling trout. Bioenergetic modelling indicated that fish are constrained to use progressively deeper habitats to meet increasing energy requirements as they grow. Sensitivity of growth to prey abundance identified the need to better understand how variation in invertebrate drift and terrestrial drop affects habitat quality and capacity for drift-feeding fishes.     

Environmental requirements and heterogeneity of rheophilic fish nursery habitats in European lowland rivers: Current insights and future challenges

The large-scale degradation of riparian ecotones and of the connectivity between rivers and their floodplains has resulted in a drastic decline of rheophilic fish populations in European temperate lowland rivers. Recent river restoration projects have had variable success in effectively restoring these fish populations. Knowledge on nursery habitat requirements is considered essential for effective population restoration. However, a detailed understanding of the role of habitat heterogeneity in young-of-the-year (YOY) fish population development is limited. Therefore, we carried out a synthesis of the available knowledge on nursery habitat requirements of rheophilic fish species found in European temperate lowland rivers (<200 m elevation). From a total of 603 papers, 77 studies with primary information were selected, containing 390 associations between habitat features and YOY fish. As expected, most studies focused on static components of physical riparian habitat. Generally, YOY fish require habitats of shallow depth (<0.5 m), with slow-flowing water (<0.2 m/s), gentle bank slope (<20°), variety in substratum types (fine sand to gravel), relatively warm water and high food availability. Surprisingly, no clear ontogenetic habitat shifts between larvae and juveniles were found, which may be explained by the limited spatial–temporal resolution of most studies. Since 2011, studies on habitat heterogeneity have increased, but few have explicitly assessed its role in relation to movement patterns of YOY fish for nursery success. Therefore, we recommend that future research focuses on fish movement patterns between habitat patches in heterogeneous (river-floodplain) environments, to increase the knowledge base for effective recovery of rheophilic fish populations.     

Fish feeding in changing habitats: effects of invasive macrophyte control and habitat complexity

Abstract –  Many freshwater lakes have been invaded by non-native aquatic plants. Although managing the invasions is necessary to restore native macrophytes, little is known about the effects of invasive macrophyte eradication on fish foraging. This study was designed to determine whether fish feeding was affected by large-scale changes in plant composition after selective control of invasive Eurasian watermilfoil, Myriophyllum spicatum , and whether feeding was correlated with habitat complexity or abundance of invasive plants on a smaller scale. Popnets were used to collect plants, invertebrates and fishes in the littoral zone of four Minnesota lakes twice a year for 4 years. The degree of stomach fullness in fishes was not correlated with the proportion of invasive plants or habitat complexity. Bluegills, the most abundant fish species, exhibited high selectivity for Diptera and their preferences varied little in different plant habitats. Changes in niche width of bluegills were not consistent with invasive plant control. Overall, invasive macrophyte control with timely restoration of the native plant community did not affect the characteristics of fish feeding we investigated. This study also contributes to our understanding of fish–macroinvertebrate interactions as a function of habitat complexity.     

Influence of aquatic plant‐specific habitat on an assemblage of small neotropical floodplain fishes

Dibble ED, Pelicice FM. Influence of aquatic plant‐specific habitat on an assemblage of small neotropical floodplain fishes.
Ecology of Freshwater Fish 2010: 19: 381–389. © 2010 John Wiley & Sons A/S Abstract – This study investigated the effects of plant‐specific habitat on the distribution of young and small adult fishes in lagoons of the Upper Paraná River floodplain, Brazil. We compared fish catch per unit effort (CPUE) and species richness and used an indirect gradient analysis to investigate fish‐plant relationships within three aquatic macrophytes beds (Cabomba furcata, Eichhornia azurea, Nymphaea amazonum), and explored microhabitat influence (indexed by eight variables related to physical structure and water quality) on the structure of fish assemblages. Rarefaction analysis was used to compare fish species richness among the vegetated habitats. We captured a total of 1599 fish constituting 23 species, 7 families and 3 orders. Fish CPUE and species richness increased relative to microhabitat structure innate to the macrophytes; higher CPUE and richness were observed in C. furcata beds, a submerged aquatic macrophyte with finely dissected leaves. On the contrary, N. amazonum, a species that provides low microhabitat complexity, harbored fewer individual fish and number of species. Reproduction dynamics, hydrology and the amount of available plant‐generated habitat structure (surface effect) contributed to the disproportionally high number of individuals captured during the dry season. Our data suggest that the microhabitat physical structure (e.g., edge distance, stem density and patch size) provided by macrophyte beds in the lagoons of the Upper Paraná River may play a more important role than physicochemistry (e.g., oxygen, temperature and pH) at mediating distribution patterns of small‐sized fishes.     

Distribution and feeding of juvenile fish on invertebrates in littoral reed (Phragmites) stands

Abstract – Complex interactions between fish predators and their prey have been found in structurally complex habitats built by submerged macrophytes. In contrast, the role of comparably structured littoral reed stands in shaping biotic interactions has not been investigated. We hypothesised that reed stands may be a valuable feeding habitat for juvenile fish, and that perch and roach may segregate along the spatial and dietary niche dimensions between reed and open water habitats. In contrast, the protection effect of reed against predators was assumed to be rather low because of the lower plant volume infested in reed when compared with submerged macrophytes. We analysed biomass and growth of juvenile (age 0 and age 1) perch and roach in littoral reed habitats and in open water habitats in front of the reed in the shallow Lake Müggelsee over 4 months in 2000. Sampling was conducted by point-abundance electrofishing over the full diel cycle (day, dusk, night, dawn). Zooplankton and benthos biomasses were determined in both habitats as well, and habitat-specific diet of fish was assessed during day and night. Roach were more frequent than perch in both habitats. Food of roach included a higher proportion of zooplankton, whereas perch fed more on macroinvertebrates. Overall, diet overlap between the fish groups was high. Diel distribution of fish did not follow the expectations of habitat segregation between perch and roach. Instead, the function of reed as refuge habitat against littoral piscivores (mainly birds) may have caused the strong daytime preference for reed in almost all fish groups, which was partly upset by roach at night. The higher behavioural plasticity of roach may explain their good performance even under the conditions of high structural complexity.     

Fish community composition of a tropical nonestuarine embayment in Zanzibar,Tanzania

ABSTRACT:   By using a seine net, fish samples were taken from the nonestuarine Chwaka Bay (Zanzibar, Tanzania) from the mangroves, mud/sand flats and seagrass beds. Sampling was done twice per month between November 2001 and October 2002. In total, 150 fish species belonging to 55 families were identified. Diversity ( H' ) ranged from 1.9 in mud/sand flats to 3.4 within the Chwaka seagrass beds. Mean density of fishes was significantly higher in the mangrove creeks than in any other habitat (mean = 238.7 ind./1000 m²). Highest, but non-significantly different mean biomasses were recorded in the mangrove creeks (1.7 kg/1000 m²) and in the Marumbi seagrass beds (1.6 kg/1000 m²). The mangrove channel had the lowest biomass (0.6 kg/1000 m²). A high overlap in species composition (as high as 93.4% similarity) was found for adjoining habitats (i.e. mangrove creeks and mangrove channel), while habitats that were far apart showed low overlap (6.6% similarity for the Marumbi seagrass beds and mangrove creeks). On average, 58.4 and 63.2% in terms of abundance and biomass, respectively, of the fish assemblage of Chwaka Bay were of commercial fishery importance. Thus, Chwaka Bay appears to be an important juvenile habitat for various commercially important fish species.     

Evaluation of the removal of impassable barriers on anadromous salmon and steelhead in the Columbia River Basin

Despite the popularity of barrier removal as a habitat restoration technique, there are few studies that evaluate the biological effects of restored stream crossings. An extensive post‐treatment study design was used to quantify fish populations (e.g. species, life stage, abundance) and habitat attributes (e.g. gradient, geomorphic channel units) at 32 culvert removal or replacement projects to determine their effectiveness in restoring habitat access for juvenile salmon, Oncorhynchus spp., and steelhead, O. mykiss (Walbaum), in the Columbia River Basin, USA. Anadromous fish (steelhead, Chinook salmon O. tshawytscha [Walbaum]) abundance, juvenile steelhead abundance and habitat conditions were not significantly different between paired reaches (i.e. upstream and downstream of former barrier sites), suggesting these sites are no longer full barriers to movement. This suggests that barrier removal projects on small Columbia Basin streams provide adequate fish passage, increased habitat availability and increased juvenile anadromous fish abundance immediately upstream of former barriers.     

Summer microhabitat use by adult and young‐of‐year snail darters (Percina tanasi) in two rivers

Ashton MJ, Layzer JB. Summer microhabitat use by adult and young‐of‐year snail darters (Percina tanasi) in two rivers. Ecology of Freshwater Fish 2010: 19: 609–617. © Published 2010. This article is a US Government work and is in the public domain in the USA. Abstract – We characterised microhabitat availability and use by adult and young‐of‐year (YOY) snail darters (Percina tanasi Etnier 1976 ) while snorkelling in the French Broad and Hiwassee rivers, TN, USA. Both age groups of snail darters disproportionately used most microhabitat variables compared to their availability. Snail darters primarily occupied moderately deep, swift water over gravel substrates with little macrophyte coverage and no silt. Univariate comparisons indicated that adult and YOY darters occupied different habitat, but there was no marked differences between principal components analysis plots of multivariate microhabitat use within a river. Although the availability of microhabitat variables differed between the French Broad and Hiwassee rivers, univariate means and multivariate plots illustrated that the habitats used were generally similar by age groups of snail darters between rivers. Because our observations of habitat availability and use were constrained to low flow periods and depths <1 m, the transferability of our results to higher flow periods may be limited. However, the similarity in habitat use between rivers suggests that our results can be applied to low‐normal flow conditions in other streams.     

Dilution stress facilitates colonization of invasive mosquitofish in a saline Mediterranean stream: population biology response

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Differences in fish assemblage structures between fragmented and continuous seagrass beds in Trang,southern Thailand

Fish assemblage structures in fragmented and continuous seagrass habitats in Trang Province, Thailand, were examined in detail to elucidate the effects of habitat fragmentation. The assemblage structures clearly differed: fish species diversity was apparently higher in the fragmented seagrass beds, although total fish numbers did not differ between them. A total of 37 fish species were collected, including 24 and 34 species from the continuous and fragmented beds, respectively. Thirteen species were restricted to the fragmented beds, compared with three restricted to the continuous beds. In addition, eight species were more abundant in the fragmented beds and only two in the continuous beds. Such differences may have arisen, at least in part, from differences in microhabitat diversity and the relative amounts of microhabitats between the two habitat types, as well as specific microhabitat preferences of the resident fishes. Although fragmented beds supported greater fish species diversity at the present study sites, it is axiomatic that habitat fragmentation caused by anthropogenic disturbance is unacceptable, with seagrass-habitat conservation being essential for both the preservation of high overall biodiversity and the successful management of local fisheries.     

Interactions between juvenile roach or perch and their invertebrate prey in littoral reed versus open water enclosures

Abstract – Structural complexity offered by submerged macrophytes was shown to have fundamental effects on interactions between fish and their prey. However, less information is available for littoral reed (Phragmites spp.) stands. A previous field study found juvenile roach and perch to coexist within the reed stands. It was suggested that reed serves mainly as refuge against littoral piscivores, such that coexistence of perch and roach in the reed was externally forced. Several hypotheses were raised to explain why roach nevertheless showed good growth performance. Three of the hypotheses were tested experimentally. In particular, we were interested in how the confinement of fish to one of the reed or open water habitats alters feeding and growth patterns of juvenile age‐1 perch and roach. Fish were stocked separately into littoral enclosures for a 3‐week period in densities which had been found in the surrounding lake. Development of zooplankton and macroinvertebrate biomasses was observed by sampling the enclosures three times over the experimental period. Individual consumption of prey groups by the fish was calculated with a bioenergetics model, and was compared with prey group biomass in the enclosure treatments. The confinement of fish to one littoral habitat had clear effects on diet composition and growth rates. Roach fed less zooplankton and partially switched to macroinvertebrates in the reed enclosures when compared with the open water treatments, and consequently their growth rates were lower in the reed. Perch preferred macroinvertebrates in both habitats, without any difference in growth rates between the habitats. Effects of fish predation on both zooplankton and macroinvertebrate biomass were low in open water and reed enclosures. Daily consumption rates were only in a few cases higher than 40% of the available biomass of the respective prey group, but mainly were below 10% of available biomass. Therefore, we argue that both the diel horizontal migrations of roach and the relatively low consumption rate of fish when compared with the available resource biomass allow the coexistence of juvenile roach and perch in littoral reed stands.     

Fish utilisation of managed realignments

Abstract  One area of ecological benefit not yet fully evaluated in European waters is the utilisation of restored saltmarsh habitats by fish species. This study examines the utilisation of managed realignments and relic saltmarsh by fish species. Factors affecting habitat heterogeneity and fish populations are discussed, and recommendations are made with respect to scheme design and management that will maximise the biological and socio-economic values. Fish populations in the high intertidal areas were assessed using a suite of techniques, including observations on feeding behaviour. Each microhabitat was discussed as a function of the extent of fish colonisation. A positive relationship between the degree of fish utilisation and habitat heterogeneity was ascertained using species richness, abundance and behavioural observations. This study will aid habitat valuation for economic justification of managed realignments, over and above existing drivers, such as compensatory habitat for encroachment, flood defence and the European Union Habitats Directive. The work now forms part of a wider European Interreg IIIb project, COMCOAST.     

Controls of local young-of-the-year fish species richness in flood plain water bodies: potential effects of habitat heterogeneity, productivity and colonisation–extinction events

Abstract –  This study reports on the relationships between young-of-the-year (YOY) fish species richness and landscape and local factors in 20 backwaters of the Seine River flood plain. Using multiple linear regression, we tested the importance of three types of variable for explaining total species richness (TSR), phytophil species richness (PSR) and lithophil species richness (LSR): (1) colonisation–extinction processes, (2) habitat heterogeneity and (3) productivity. At the local scale, no variables describing habitat heterogeneity correlated with TSR, PSR or LSR. Productivity was correlated only with TSR according to a polynomial model. In contrast, variables relating to the colonisation–extinction process correlated with TSR, PSR and LSR: TSR varied mainly with backwater size, which is a surrogate of extinction, whereas PSR and LSR correlated with the relative longitudinal position of backwaters and the size of their connection to the main channel. In conclusion, it seems that the total fish richness varies as a function of local factors, whereas the components of fish diversity are rather influenced by landscape factors.     

Remediation of upstream passage for migrating Galaxias (Family: Galaxiidae) through a pipe culvert

Movement through streams is critical for the maintenance of diadromous fish populations. Numerous fish passage improvement techniques exist, and knowledge of their effectiveness is required to conserve target species. An existing 70‐m pipe culvert was considered a barrier to the passage success of young‐of‐year (YOY) Galaxias spp. as a result of high water velocity (0.9 m/s). Water velocity in the pipe culvert was reduced by installing a concrete weir downstream of the culvert. A lateral ridge rock‐ramp fishway was installed to provide for the passage of fish over the weir, and baffles were installed in the upstream portion of the culvert to provide refuge from higher water velocity at this location. A BACI design was used to determine whether passage success, measured using a mark–recapture technique, improved as a result of the remediation works. The probability of successful passage of YOY Galaxias spp. through the culvert increased from 0.03 to 0.41 following remediation works and was similar to levels observed at a control site (0.33). The success of the fishway and baffles at this culvert provides an important case study for managers to adopt this technique to improve fish passage on a broader scale and range of other sites.     

Quantifying links between instream woody habitat and freshwater fish species in south‐eastern Australia to inform waterway restoration

1. Removal of instream woody habitat (IWH) is one factor attributed to declines in fish populations worldwide. Restoration of IWH to help fish populations recover is now common; however, quantitative predictions about the outcomes of these interventions is rare. As such, quantitative links between IWH and fish abundance is of interest to managers to inform conservation and restoration activities.
2. Links between instream habitat attributes, especially IWH, and selected fish species of recreational, cultural, and ecological significance were explored at 335 sites spanning eight streams across south‐eastern Australia. Data were collected on fish abundance and length, IWH density and a range of other habitat attributes at a scale that incorporated at least one of each of the major mesohabitat types (functional river elements). The data were analysed using Bayesian hierarchical generalized linear mixed models to examine fish habitat associations and used to make quantitative predictions of responses to future restoration.
3. Strong positive relationships were found between fish abundance and IWH density and the strength of this relationship varied between species and waterways. Murray cod (Maccullochella peelii), a species commonly targeted by IWH interventions, displayed the strongest association with IWH density. River blackfish (Gadopsis marmoratus) also showed a significant relationship with IWH, but this effect was waterway specific. Fish length was only related to IWH for river blackfish. These results may reflect differences in the life histories of these two species. We suggest that differences in habitat association through ontogeny may be more relevant at smaller spatial scales.
4. The results generated in this study can be used to guide waterway restoration and develop quantitative predictions about how fish might respond to IWH interventions across south‐eastern Australia. This approach provides a powerful quantitative framework within which to explore management options and objectives, and to test our predicted responses to habitat restoration.

     

Seasonal dynamics of habitat use by an airbrathing catfish (Claris liocephalus) in a papyrus swamp

I examined the effects of extreme hypoxia and water level fluctuations on the distribution and movement of an air-breathing clariid catfish, Clarias liocephalus, in a papyrus swamp in western Uganda. Monthly records of the distribution and relative abundance of C. liocephalus across 28 swamp stations were used to examine seasonal trends in habitat use and movement. My results suggest that dissolved oxygen did not directly limit use of, or dispersal through, the papyrus swamp. C. liocephalus were found at most stations in the dry season, and there was no significant relationship between the number of stations used per month and mean monthly dissolved oxygen levels. In addition, there was no evidence for a significant effect of oxygen on the relative abundance of fish among stations during the driest months, or during peak flood conditions. However, relative abundance was positively correlated with water depth during the dry season. Fish from deeper habitats exhibited fewer injuries and lower rates of disappearance than fish from shallower waters. This may reflect the risk of aerial predation for surfacing fish. A comparison of habitat use and movements of C. liocephalus with the only other fish species found in the papyrus swamp, Barbus neumayeri, supports the idea that respiratory mode can affect the use of hypoxic papyrus swamps. B. neumayeri, is a small water-breathing cyprinid that uses aquatic surface respiration in response to severe hypoxia. The air-breathing capabilities of C. liocephalus permitted more widespread use of swamp waters than B. neumayeri. This study demonstrates that an understanding of the respiratory mode of fish species may be useful in predicting patterns of habitat use.     

Habitat preferences of selected demersal fish species in the Bay of Biscay and Celtic Sea, North-East Atlantic

According to the Ideal Free Distribution theory, individual fish are distributed where environmental conditions are optimal, and the occupied area may vary with population abundance. Thus, observed distributions are a combination of habitat suitability and density-dependent effects. Data from an annual bottom trawl survey taking place in autumn were used to assess associations between the distributions of eight demersal fish species, separately for juveniles and adults, and habitat characteristics (depth, temperature and salinity) in the Bay of Biscay and Celtic Sea. Cumulative distribution functions were used to describe the general frequency distributions of environmental variables and their relationships with fish density. During the period 1992–2006, observed bottom temperatures fluctuated with no time trend (ΔT = 8°C in the first 80 m) and population abundances varied significantly. Juvenile hake, poor cod, blue whiting, adult red gurnard, adult megrim, and lesser-spotted dogfish were found to be significantly associated with specific depth ranges. Associations with bottom temperature and salinity were weaker. For some species, preferred environmental conditions changed over time, independently of variations in environmental conditions. In general, most species seemed to be able to cope with the experienced range of conditions. Habitat associations were not influenced by abundance variations. Fluctuating abundances had an impact on spatial occupation only for red gurnard adults, lesser-spotted dogfish and blue whiting juveniles, independent of absolute densities.