Microbial activity in pig slurry-amended soils under semiarid conditions

Soil amendment with manures from intensive animal industries is nowadays a common practice that may favorably or adversely affect several soil properties, including soil microbial activity. In this work, the effect of consecutive annual additions of pig slurry (PS) at rates of 30, 60, 90, 120 and 150 m³ ha⁻¹ y⁻¹ over a 4-year period on soil chemical properties and microbial activity was investigated and compared to that of an inorganic fertilization and a control (without amendment). Field plot experiment conducted under a continuous barley monoculture and semiarid conditions were used. Eight months after the fourth yearly PS and mineral fertilizer application (i.e. soon after the fourth barley harvest), surface soil samples (Ap horizon, 0-15 cm depth) from control and amended soils were collected and analysed for pH, electrical conductivity (EC), contents of total organic C, total N, available P and K, microbial biomass C, basal respiration and different enzymatic activities. The control soil had a slightly acidic pH (6.0), a small EC (0.07 dS m⁻¹), adequate levels of total N (1.2 g kg⁻¹) and available K (483 mg kg⁻¹) for barley growth, and small contents of total organic C (13.2 g kg⁻¹) and available P (52 mg kg⁻¹). With respect to the control and mineral fertilized soils, the PS-amended soils had greater pH values (around neutrality or slightly alkaline), electrical conductivities (still low) and contents of available P and K, and slightly larger total N contents. A significant decrease of total organic C was observed in soils amended at high slurry rate (12.3 g kg⁻¹). Compared with the control and mineral treatments, which produced almost similar results, the PS-amended soils were characterized by a higher microbial biomass C content (from 311 to 442 g kg⁻¹), microbial biomass C/total organic C ratio (from 2.3 to 3.6%) and dehydrogenase (from 35 to 173 μg INTF g⁻¹), catalase (from 5 to 24 μmol O₂ g⁻¹ min⁻¹), BAA-protease (from 0.7 to 1.9 μmol  g⁻¹ h⁻¹) and β-glucosidase (from 117 to 269 μmol PNP g⁻¹ h⁻¹) activities, similar basal respirations (from 48 to 77 μg C-CO₂ g⁻¹ d⁻¹) and urease activities (from 1.5 to 2.2 μmol  g⁻¹ h⁻¹), and smaller metabolic quotients (from 6.4 to 7.7 ng C-CO₂ μg⁻¹ biomass C h⁻¹) and phosphatese activities (from 374 to 159 μmol PNP g⁻¹ h⁻¹). For example, statistical analysis of experimental data showed that, with the exception of metabolic quotient and total organic C content, these effects generally increased with increasing cumulative amount of PS. In conclusion, cumulative PS application to soil over time under semiarid conditions may produce not only beneficial effects but also adverse effects on soil properties, such us the partial mineralization of soil organic C through extended microbial oxidation. Thus, PS should not be considered as a mature organic amendment and should be treated appropriately before it is applied to soil, so as to enhance its potential as a soil organic fertilizer.     

Microbial use of lignite compared to recent plant litter as substrates in reclaimed coal mine soils

In the Lusatian mining district, rehabilitated mine soils contain substantial amounts of lignite in addition to recent carbon derived from plant litter. The aim of this study was to examine the importance of the two organic matter types as substrates for soil microbial biomass in mine soils containing organic matter with a contrasting degree of humification. Samples were taken from the lignite-containing overburden material, from a mine soil under 14-year-old black pine (Pinus nigra) and from a mine soil under 37-year-old red oak (Quercus rubra). Overburden material was ameliorated with alkaline ash and incubated in an identical manner as the 14-year-old and 37-year-old mine soils for 16 months. Carbon mineralisation was monitored throughout. After 0, 3, 6, 12 and 16 months, samples were removed and analysed for chemical parameters and for microbial biomass. In addition, ¹⁴C activity measurements in bulk soil and microbial biomass were used to estimate their lignite content.Despite the high content of organic carbon in lignite-rich overburden material, low contents of microbial biomass were recorded. Ash-amelioration led to high pH values in the overburden material, resulting in high concentrations of dissolved organic carbon most likely derived from lignite. Development of the microbial community was subsequently stimulated by presence of an easily available carbon source. In older mine soils, larger amounts of microbial biomass are most likely related to the presence of recent organic matter. Radiocarbon analysis of the microbial biomass extracted from the 14-year-old mine soil indicated higher lignite carbon contribution than recorded for microbial biomass of the 37-year-old mine soil. The highest concentration of lignite C present in microbial biomass as indicated by the C_mic/C_org ratio was, however, observed in the ameliorated overburden material. Therefore, we conclude that the importance of lignite as a carbon source for micro-organisms decreases when recent organic matter is present in the older stages of mine soil development.     

Microbial biomass and activities in partly hydromorphic agricultural and forest soils in the Bornhöved Lake region of Northern Germany

The soil microbial biomass and activity were estimated for seven field (intensive and extensive management), grassland (dry and wet), and forest (beech, dry and wet alder) sites. Three of the sites (wet grassland, dry and wet alder) are located on a lakeshore and are influenced by lake water and groundwater. Four different methods were selected to measure and characterize the microbial biomass. Values of microbial biomass (weight basis) and total microbial biomass per upper horizon and hectare (volume basis) were compared for each site.Fumigation-extraction and substrate-induced respiration results were correlated but dit not give the same absolute values for microbial biomass content. When using the original conversion factors, substrate-induced respiration gave higher values in field and dry grassland soils, and fumigation-extraction higher values in soils with low pH and high water levels (high organic content). Results from dimethylsulfoxide reduction and arginine ammonification, two methods for estimating microbial activity, were not correlated with microbial biomass values determined by fumigation-extraction or substrate-induced respiration in all soils examined. In alder forest soils dimethylsulfoxide reduction and arginine ammonification gave higher values on the wet site than on the dry site, contrary to the values estimated by fumigation-extraction and substrate-induced respiration. These microbial activities were correlated with microbial biomass values only in field and dry grassland soils. Based on soil dry weight, microbial biomass values increased in the order intensive field, beech forest, extensive field, dry grassland, alder forest, wet grassland. However, microbial biomass values per upper horizon and hectare (related to soil volume) increased in agricultural soils in the order intensive field, dry grassland, extensive field, wet grassland and in forest soils in the order beech, wet alder, dry alder. We conclude that use of the original conversion factors with the soils in the present study for fumigation-extraction and substrate-induced respiration measurements does not give the same values for the microbial biomass. Furthermore, dimethylsulfoxide reduction and arginine ammonification principally characterize specific microbial activities and can be correlated with microbial biomass values under specific soil conditions. Further improvements in microbial biomass estimates, particularly in waterlogged soils, may be obtained by direct counts of organisms, ATP estimate, and the use of ¹⁴C-labelled organic substrates. From the ecological viewpoint, data should also be expressed per horizon and hectare (related to soil volume) to assist in the comparison of different sites.     

Seasonality of soil biological properties in a poplar plantation growing under elevated atmospheric CO2

Microorganisms are the regulators of decomposition processes occurring in soil, they also constitute a labile fraction of potentially available N. Microbial mineralization and nutrient cycling could be affected through altered plant inputs at elevated CO_2. An understanding of microbial biomass and microbial activity in response to belowground processes induced by elevated CO₂ is thus crucial in order to predict the long-term response of ecosystems to climatic changes. Microbial biomass, microbial respiration, inorganic N, extractable P and six enzymatic activities related to C, N, P and S cycling (β-glucosidase, cellulase, chitinase, protease, acid phosphatase and arylsulphatase) were investigated in soils of a poplar plantation exposed to elevated CO_2. Clones of Populus alba, Populus nigra and Populus x euramericana were grown in six 314 m² plots treated either with atmospheric (control) or enriched (550 μmol mol⁻¹ CO₂) CO₂ concentration with FACE technology (free-air CO₂ enrichment). Chemical and biochemical parameters were monitored throughout a year in soil samples collected at five sampling dates starting from Autumn 2000 to Autumn 2001.

The aim of the present work was: (1) to determine if CO₂ enrichment induces modifications to soil microbial pool size and metabolism, (2) to test how the seasonal fluctuations of soil biochemical properties and CO₂ level interact, (3) to evaluate if microbial nutrient acquisition activity is changed under elevated CO₂.

CO₂ enrichment significantly affected soil nutrient content and three enzyme activities: acid phosphatase, chitinase and arylsulphatase, indicators of nutrient acquisition activity. Microbial biomass increased by a 16% under elevated CO₂. All soil biochemical properties were significantly affected by the temporal variability and the interaction between time and CO₂ level significantly influenced β-glucosidase activity and microbial respiration. Data on arylsulphatase and chitinase activity suggest a possible shift of microbial population in favour of fungi induced by the FACE treatment.     

Microbial communities, biomass, and activities in soils as affected by freeze thaw cycles

Two Finnish agricultural soils (peat soil and loamy sand) were exposed to four freeze-thaw cycles (FTC), with a temperature change from −17.3±0.4 °C to +4.1±0.4 °C. Control cores from both soils were kept at constant temperature (+6.6±2.0 °C) without FTCs. Soil N₂O and CO₂ emissions were monitored during soil thawing, and the effects of FTCs on soil microbes were studied. N₂O emissions were extremely low in peat soil, possibly due to low soil water content. Loamy sand had high N₂O emission, with the highest emission after the second FTC. Soil freeze-thaw increased anaerobic respiration in both soil types during the first 3-4 FTCs, and this increase was higher in the peat soil. The microbial community structure and biomass analysed with lipid biomarkers (phospholipid fatty acids, 3- and 2- hydroxy fatty acids) were not affected by freezing-thawing cycles, nor was soil microbial biomass carbon (MIB-C). Molecular analysis of the microbial community structure with temperature gradient gel electrophoresis (TGGE) also showed no changes due the FTCs. These results show that freezing and thawing of boreal soils does not have a strong effect on microbial biomass or community structure.     

Microbial community response to nitrogen deposition in northern forest ecosystems

The productivity of temperate forests is often limited by soil N availability, suggesting that elevated atmospheric N deposition could increase ecosystem C storage. However, the magnitude of this increase is dependent on rates of soil organic matter formation as well as rates of plant production. Nonetheless, we have a limited understanding of the potential for atmospheric N deposition to alter microbial activity in soil, and hence rates of soil organic matter formation. Because high levels of inorganic N suppress lignin oxidation by white rot basidiomycetes and generally enhance cellulose hydrolysis, we hypothesized that atmospheric N deposition would alter microbial decomposition in a manner that was consistent with changes in enzyme activity and shift decomposition from fungi to less efficient bacteria. To test our idea, we experimentally manipulated atmospheric N deposition (0, 30 and 80 kg NO₃⁻-N) in three northern temperate forests (black oak/white oak (BOWO), sugar maple/red oak (SMRO), and sugar maple/basswood (SMBW)). After one year, we measured the activity of ligninolytic and cellulolytic soil enzymes, and traced the fate of lignin and cellulose breakdown products (¹³C-vanillin, catechol and cellobiose).In the BOWO ecosystem, the highest level of N deposition tended to reduce phenol oxidase activity (131±13 versus 104±5 μmol h⁻¹ g⁻¹) and peroxidase activity (210±26 versus 190±21 μmol h⁻¹ g⁻¹) and it reduced ¹³C-vanillin and ¹³C-catechol degradation and the incorporation of ¹³C into fungal phospholipids (p<0.05). Conversely, in the SMRO and SMBW ecosystems, N deposition tended to increase phenol oxidase and peroxidase activities and increased vanillin and catechol degradation and the incorporation of isotope into fungal phospholipids (p<0.05). We observed no effect of experimental N deposition on the degradation of ¹³C-cellulose, although cellulase activity showed a small and marginally significant increase (p<0.10). The ecosystem-specific response of microbial activity and soil C cycling to experimental N addition indicates that accurate prediction of soil C storage requires a better understanding of the physiological response of microbial communities to atmospheric N deposition.     

Microbial respiration and biomass (substrate-induced respiration) in soils of old-growth and regenerating forests on northern Vancouver Island,British Columbia

In studying the basal respiration, microbial biomass (substrate-induced respiration, SIR), and metabolic quotient (qCO₂) in western red cedar (Thuja plicata Donn ex D. Don)-western hemlock [(Tsuga heterophylla Raf.) Sarg.] ecosystems (old-growth forests, 3- and 10-year-old plantations) on northern Vancouver Island, British Columbia, Canada, we predicted that (1) soil basal respiration would be reduced by harvesting and burning, reflecting the reduction in microbial biomass and activities; (2) the microbial biomass would be reduced by harvesting and slash-burning, due to the excessive heat of the burning or due to reduced substrate availability; (3) microbial biomass in the plantations would tend to recover to the preharvesting levels with growth of the trees and increased substrate availability; and (4) microbial biomass measured by the SIR method would compare well with that measured by the fumigation-extraction (FE) method. Decaying litter layer (F), woody F (Fw) and humus layer (H) materials were sampled four times in the summer of 1992. The results obtained supported the four predictions. Microbial biomass was reduced in the harvested and slash-burned plots. Both SIR and FE methods provided equally good estimates of microbial biomass in the samples [SIR microbial C (mg g^-1)=0.227+0.458 FE microbial C (mg g^-1), r=0.63, P=0.0001] and proved suitable for microbial biomass measurements in this strongly acidic soil. Basal respiration was significantly greater in the old-growth forests than in the young plantations (P<0.05) in both F and H layers, but not in the Fw layer. For the 3- and 10-year-old plantations, there was no difference in basal respiration in F, Fw, and H layers. Basal respiration was related to changes in air temperature, precipitation, and the soil moisture contant at the time of sampling. The qCO₂ values were higher in the old-growth stands than in the plantations. Clear-cutting followed by prescribed burning did not increase soil microbial respiration, but CO₂ released from slash-burning and that contributed from other sources may be of concern to increasing atmospheric CO₂ concentrations.     

Effects of tree harvesting, forest floor removal, and compaction on soil microbial biomass, microbial respiration, and N availability in a boreal aspen forest in British Columbia

The effects of timber harvesting and the resultant soil disturbances (compaction and forest floor removal) on relative soil water content, microbial biomass C and N contents (C_mic and N_mic), microbial biomass C:N ratio (C_mic-to-N_mic), microbial respiration, metabolic quotient (qCO₂), and available N content in the forest floor and the uppermost mineral soil (0-3 cm) were assessed in a long-term soil productivity (LTSP) site and adjacent mature forest stands in northeastern British Columbia (Canada). A combination of principal component analysis and redundancy analysis was used to test the effects of stem-only harvest, whole tree harvest plus forest floor removal, and soil compaction on the studied variables. Those properties in the forest floor were not affected by timber harvesting or soil compaction. In the mineral soil, compaction increased soil total C and N contents, relative water content, and N_mic by 45%, 40%, 34% and 72%, respectively, and decreased C_mic-to-N_mic ratio by 29%. However, these parameters were not affected by stem only harvesting or whole tree harvesting plus forest floor removal, contrasting the reduction of white spruce and aspen growth following forest floor removal and soil compaction reported in an earlier study. Those results suggest that at the study site the short-term effects of timber harvesting, forest floor removal, and soil compaction are rather complex and that microbial populations might not be affected by the perturbations in the same way as trees, at least not in the short term.     

Decomposition of pea and maize straw in Pakistani soils along a gradient in salinity

Maize straw and pea straw were added to five Pakistani soils from a gradient in salinity to test the following hypotheses: Increasing salinity at high pH decreases proportionally (1) the decomposition of added straw and (2) the resulting net increase in microbial biomass. In the non-amended control soils, salinity had depressive effects on microbial biomass C, biomass N, but not on biomass P and ergosterol. The ratios microbial biomass C-to-N and biomass C-to-P decreased consistently with increasing salinity. In contrast, the ergosterol-to-microbial biomass C ratio was constant in the four soils at pH>8.9, but nearly doubled in the most saline, but least alkaline, soil (pH 8.2). The addition of the maize and pea straw always increased the contents of microbial biomass C, biomass N, biomass P and ergosterol, but without clear effects of salinity. Highest mean contents of microbial biomass C and biomass N were measured at day 0, immediately after the straw was added. Straw amendments increased the CO₂ evolution rates of all five soils without any effect of salinity. The same was true for total C and total N in the two fractions of particulate organic matter (POM) 63–400 μm and >400 μm. Lowest percentage of straw-derived CO₂-C and highest recoveries of POM-C and POM-N were observed in the maize straw treatment and the reverse in the pea straw treatment. Yield coefficients were calculated for maize and pea straw based on the assumption that the balance gap between CO₂ and the amount of POM can be fully assigned to microbial products.     

Effects of elevated CO2 concentration on rhizodeposition from Lolium perenne grown on soil exposed to 9 years of CO2 enrichment

The effects of enriched CO₂ atmosphere on partitioning of recently assimilated carbon were investigated in a plant-soil-microorganism system in which Lolium perenne seedlings were planted into cores inserted into the resident soil within a sward that had been treated with elevated CO₂ for 9 consecutive years, under two N fertilisation levels (Swiss FACE experiment). The planted cores were excavated from the ambient (35 Pa pCO₂) and enriched (60 Pa pCO₂) rings at two dates, in spring and autumn, during the growing season. The cores were brought back to the laboratory for ¹⁴C labelling of shoots in order to trace the transfer of recently assimilated C both within the plant and to the soil and microbial biomass. At the spring sampling, high N supply stimulated shoot and total dry matter production. Consistently, high N enhanced the allocation of recently fixed C to shoots, and reduced it to belowground compartments. Elevated CO₂ had no consequences for DM or the pattern of C allocation. At the autumn sampling, at high N plot, yield of L. perenne was stimulated by elevated CO₂. Consistently, ¹⁴C was preferentially allocated aboveground and, consequently belowground recent C allocation was depressed and rhizodeposition reduced. At both experimental periods, total soil C content was similar in all treatments, providing no evidence for soil carbon sequestration in the Swiss Free Air CO₂ Enrichment experiment (FACE) after 9 years of enrichment. Recently assimilated C and soil C were mineralised faster in soils from enriched rings, suggesting a CO₂-induced shift in the microbial biomass characteristics (structure, diversity, activity) and/or in the quality of the root-released organic compounds.     

Atmospheric sulfur deposition for a red soil broadleaf forest in southern China

A two-year study in a typical red soil region of Southern China was conducted to determine 1) the dry deposition velocity (Vd) for SO2 and particulate SO4^2- above a broadleaf forest, and 2) atmospheric sulfur fluxes so as to estimate the contribution of various fractions in the total. Using a resistance model based on continuous hourly meteorological data, atmospheric dry sulfur deposition in a forest was estimated according to Va and concentrations of both atmospheric SO2 and particulate SO2^4-. Meanwhile, wet S deposition was estimated based on rainfall and sulfate concentrations in the rainwater. Results showed that about 99% of the dry sulfur deposition flux in the forest resulted from SO2 dry deposition.In addition, the observed dry S deposition was greater in 2002 than in 2000 because of a higher average concentration of SO2 in 2002 than in 2000 and not because of the average dry deposition velocity which was lower for SO2 in 2002. Also,dry SO2 deposition was the dominant fraction of deposited atmospheric sulfur in forests, contributing over 69% of the total annual sulfur deposition. Thus, dry SO2 deposition should be considered when estimating sulfur balance in forest ecological systems.     

Microbiological characterization and nitrate reduction in subsurface soils

Summary Two borings (20 m depth) were performed in a sandy-clayey soil over a limestone bed and in a sandy soil with lumps of clay in some depths. Bacteria were found in the deeper soil layers of both profiles. The methods used to detect bacteria were those normally used for topsoil layers, plate counts of bacteria, ATP content, and direct microscopy. Measurements of CO₂ evolution showed that the potential for bacterial activity was present in all depths of the two profiles. However, the activity was strongly dependent on the presence of easily available organic C. An indication of the denitrification potential was obtained by measuring the N₂O evolution. Under aerobic incubation without the addition of glucose, N₂O was detected only in the topsoil. When glucose was added to the soil samples, N₂O was found at a low level in the deeper soil layers. Under anaerobic incubation, N₂O was detected in all deeper layers, and increased markedly when glucose was added to the soil samples.     

Microbial biomass and activity indices after organic substrate addition to a selenium-contaminated soil

High concentrations of Se in soil might have negative effects on microorganisms. For this reason, the effect of organic substrate addition (glucose + maize straw) on Se volatilisation in relation to changes in microbial biomass and activity indices was investigated using an artificially Se-contaminated soil. Microbial biomass N was reduced on average by more than 50% after substrate addition, but adenylate energy charge (AEC) and metabolic quotient qCO₂ were both increased. The Se content decreased by nearly 30% only with the addition of the organic substrate at 25°C. No significant Se loss occurred without substrate at 25°C or with substrate at 5°C. In the two treatments with substrate addition, the substrate-derived CO₂ evolution was about 30% lower with Se addition than without. In contrast, Se had no effect on any of the other soil microbial indices analysed, i.e. microbial biomass C, microbial biomass N, adenosine triphosphate (ATP), AEC, ATP-to-microbial biomass C, and qCO₂.     

Microbial assimilation of atmospheric CO2 into soil organic matter revealed by the incubation of paddy soils under 14C-CO2 atmosphere

Similar to higher plants, microbial autotrophs possess photosynthetic systems that enable them to fix CO₂. To measure the activity of microbial autotrophs in assimilating atmospheric CO₂, five paddy soils were incubated with ¹⁴C-labeled CO₂ for 45 days to determine the amount of ¹⁴C-labeled organic C being synthesized. The results showed that a significant amount of ¹⁴C-labeled CO₂ incorporated into microbial biomass was soil specific, accounting for 0.37%–1.18% of soil organic carbon (¹⁴C-labeled organic C range: 81.6–156.9 mg C kg^?1 of the soil after 45 days). Consequently, high amounts of C-labeled organic C were synthesized (the synthesis rates ranged from 86 to 166 mg C m^?2 d^?1). The amount of atmospheric ¹⁴CO₂ incorporated into microbial biomass (¹⁴C-labeled microbial biomass) was significantly correlated with organic C components (¹⁴C-labeled organic C) in the soil (r = 0.80, p < 0.0001). Our results indicate that the microbial assimilation of atmospheric CO₂ is an important process for the sequestration and cycling of terrestrial C. Our results showed that microbial assimilation of atmospheric CO₂ has been underestimated by researchers globally, and that it should be accounted for in global terrestrial carbon cycle models.     

Nitrous oxide emissions from agricultural soils at low temperatures: a laboratory microcosm study

We studied in laboratory microcosms (intact soil cores) N₂O and CO₂ emissions from four different agricultural soil types (organic soil, clay, silt and loam) at low temperatures with or without freezing-thawing events. When the temperature of the frozen soil cores was increased stepwise from −8 °C the N₂O emissions began to increase at −0.5 °C, and peaked at −0.1 °C in the organic, clay and silt soils, and at +1.6 °C in the loam soils. However, a stepwise decrease in soil temperature from +15 °C also induced an increase in the N₂O emissions close to the 0 °C. These emissions peaked between −0.4 and +2.5 °C depending on the soil type and water content. However, the emission maxima were from 2 to 14.3% of those encountered in the experiments where frozen soils were thawed. Our results show that in addition to the well-documented thawing peak, soils also can have a maximum in their N₂O emission near 0 °C when soil temperature decrease. These emissions, however, are less than those emitted from thawing soils. The correlations between the N₂O and CO₂ emissions were weak. Our results suggest that N₂O is produced in soils down to a temperature of −6 °C.     

Changes in soil microbial biomass carbon and enzyme activities under elevated CO2 affect fine root decomposition processes in a Mongolian oak ecosystem

The relationships between soil microbial properties and fine root decomposition processes under elevated CO₂ are poorly understood. To address this question, we determined soil microbial biomass carbon (SMB-C) and nitrogen (SMB-N), enzymes related to soil carbon (C) and nitrogen (N) cycling, the abundance of cultivable N-fixing bacteria and cellulolytic fungi, fine root organic matter, lignin and holocellulose decomposition, and N mineralization from 2006 to 2007 in a Mongolian oak (Quercus mongolica Fischer ex Ledebour) ecosystem in northeastern China. The experiment consisted of three treatments: elevated CO₂ chambers, ambient CO₂ chambers, and chamberless plots. Fine roots had significantly greater organic matter decomposition rates under elevated CO₂. This corresponded with significantly greater SMB-C. Changes in the activities of protease and phenol oxidase under elevated CO₂ could not explain the changes in fine root N release and lignin decomposition rates, respectively, while holocellulose decomposition rate had the same response to experimental treatments as did cellulase activity. Changes in cultivable N-fixing bacterial and cellulolytic fungal abundances in response to experimental treatments were identical to those of N mineralization and lignin decomposition rates, respectively, suggesting that the two indices were closely related to fine root N mineralization and lignin decomposition. Our results showed that the increased fine root organic matter, lignin and holocellulose decomposition, and N mineralization rates under elevated CO₂ could be explained by shifts in SMB-C and the abundance of cellulolytic fungi and N-fixing bacteria. Enzyme activities are not reliable for the assessment of fine root decomposition and more attention should be given to the measurement of specific bacterial and fungal communities.     

Intersite characterization and variability of soil respiration in different arable and forest soils

Summary Soil respiration was investigated in three loamy Orthic Luvisols (two arable, one forest soil), three sandy Haplic Podzols (also two arable, one forest soil) with a modified intersite method according to Lundegardh (1924). The method allows characterization of the CO₂-flux from the soil and interpretation of the different levels with regard to temperature, nutrient and air supply. The method is sensitive to tillage and fertilization effects. In the two arable Luvisols the mean cumulative respiration rate was not uniform compared with the forest soil; in one case it was much higher and in another much lower. CO₂ evolution in the Podzol under spruce was much lower than in the two arable Podzols. In the sandy Podzols 5 replicate measurements gave adequate results, with an error probability of 10%, but in the loamy Luvisols it was necessary to use 10 replicates to specify the same degree of difference. If soil respiration is very high, immediately after fertilization with cattle slurry or dung on arable land, or after litterfall in a deciduous forest, more replicates are necessary.     

Predominant bacterial and fungal assemblages in agricultural soils during a record drought/heat wave and linkages to enzyme activities of biogeochemical cycling

Identification of microbial assemblages predominant under natural extreme climatic events will aid in our understanding of the resilience and resistance of microbial communities to climate change. From November 2010 to August 2011, the Southern High Plains (SHP) of Texas, USA, received only 39.6 mm of precipitation (vs. the historical average of 373 mm) and experienced the three hottest months (June–August 2011) since record keeping began in 1911. The objective of this study was to characterize soil bacterial (16 S rRNA gene) and fungal (internal transcribed spacer 1–4, ITS1-ITS4) species distribution and diversity via pyrosequencing during the peak of the drought/heat wave in July 2011 and when the Drought Index and temperatures were lower in March 2012. Samples were collected from two different soil types (loam and sandy loam) under two different dryland cropping histories (monoculture vs. rotation). Fungal Diversity Indexes were significantly higher after the drought/heat wave while Bacterial Indexes were similar. Bacterial phyla distribution in July 2011 was characterized by lower relative abundance of Acidobacteriaand Verrucomicrobia, and greater relative abundance of Proteobacteria, Chloroflexi, Actinobacteria and Nitrospirae than March 2012 samples. Further grouping of pyrosequencing data revealed approximately equal relative proportions of Gram positive (G+) and Gram negative (G−) bacteria in July 2011, while G− bacteria predominated in March 2012. Fungal class Dothideomycetes was approximately two times greater in July 2011 than in March 2012, while the class Sordariomycetes and a group of unidentified OTUs from Ascomycota increased from July 2011 to March 2012. Microbial community composition was less influenced by management history than by the difference in climatic conditions between the sampling times. Correspondence analysis identified assemblages of fungal and bacterial taxa associated with greater enzyme activities (EAs) of C, N, or P cycling found during the drought/heat wave. Microbial assemblages associated with arylsulfatase activity (key to S cycling), which increased after the drought/heat wave, were identified (Streptomyces parvisporogenes, Terrimonas ferruginea and Syntrophobacter sp.) regardless of the soil and management history. The distinct microbial composition found in July 2011 may represent assemblages essential to maintaining ecosystem function during extreme drought and intense heat waves in semiarid agroecosystems.     

Topographic variation in heterotrophic and autotrophic soil respiration in a tropical seasonal forest in Thailand

Soil respiration is a carbon flux that is indispensable for determining carbon balance despite variations over time and space in forest ecosystems. In Kanchanaburi, western Thailand, we measured the soil respiration rates at different slope positions—ridge (plot R), upper slope (plot U), and lower slope (plot L)—on a hill in a seasonal tropical forest [mixed deciduous forest (MDF)] to determine the seasonal and spatial variations in soil respiration on the slope. The heterotrophic (organic layer and soil) and autotrophic (root) respiration was differentiated by trenching. Soil respiration rates showed clear seasonal patterns: high and low rates in rainy and dry seasons respectively, at all plots, and tended to decrease up the slope. Soil respiration rates responded significantly to soil water content in the 0–30?cm layer, but the response patterns differed between the lower slope (plot L) and the upper slope (plots R and U): a linear model could be applied to the lower slope but exponential quadratic models to the upper slope. The annual carbon dioxide (CO₂) efflux from the forest floor was also associated with the slope position and ranged from 1908?gC?m^?2?year^?1 in plot L to 1199?gC?m^?2?year^?1 in plot R. With ascending position from plot L to R, the contribution of autotrophic respiration increased from 19.4 to 36.6% of total soil respiration, while that of the organic layer decreased from 26.2 to 9.4%. Mineral soil contributed to 46.3 to 54.4% of the total soil respiration. Soil water content was the key factor in controlling the soil respiration rate and the contribution of the respiration sources. However, the variable responses of soil respiration to soil water content create a complex distribution of soil respiration at the watershed scale.     

Soil respiration characteristics of tropical soils from agricultural and forestry land-uses at Wondo Genet (Ethiopia) in response to C, N and P amendments

In most parts of tropical Africa, conversion of forests into agricultural lands is often accompanied by drastic changes in soil properties. However, little study has been done to examine changes in biological properties of soils from different land-uses in response to addition of C and nutrients. We conducted this study with the aim of investigating nutrient limitations for microbial activity in soils from agricultural (farm) and forest land-uses at Wondo Genet (Ethiopia) after amendment with C and limiting nutrients. We measured CO₂ respiration rates from the soils incubated in the laboratory before and after addition of glucose-C together with N and/or P in excess and/or limiting amounts. Based on the respiration kinetics, we determined the basal respiration (BR), substrate-induced respiration (SIR), specific-microbial growth rate (μ), respiration maxima (R_max), % of glucose-C respired, and microbially available N and P in the soils. We found that N was more limiting than P for the micro-biota in the soils considered, suggesting the presence of ample amounts of indigenous P that could be extracted by the micro-biota, if provided with C. Addition of P resulted in a respiration pattern with two peaks, presumably reflecting different N pools being available over time. The SIR, Respiration maxima, μ and microbially available P were higher in soils from the farm, while %C respired was higher in the forest, suggesting increased C costs for micro-biota to be able to utilize nutrients that are strongly bound to organic-matter or clay minerals. Depending on land-use, about 49-69% of added glucose-C was respired during two and a half weeks time, but differences between N or P additions were not significant. The correlation between soil physical and chemical properties and respiration parameters, however, depended on whether N or P was limiting. We concluded that examining the soil respiration kinetics could provide vital information on nutritional status of micro-organisms under different land-uses and on potential availability of nutrients to plants.