A historical review of the key bacterial and viral pathogens of Scottish wild fish

Thousands of Scottish wild fish were screened for pathogens by Marine Scotland Science. A systematic review of published and unpublished data on six key pathogens (Renibacterium salmoninarum, Aeromonas salmonicida, IPNV, ISAV, SAV and VHSV) found in Scottish wild and farmed fish was undertaken. Despite many reported cases in farmed fish, there was a limited number of positive samples from Scottish wild fish, however, there was evidence for interactions between wild and farmed fish. A slightly elevated IPNV prevalence was reported in wild marine fish caught close to Atlantic salmon, Salmo salar L., farms that had undergone clinical IPN. Salmonid alphavirus was isolated from wild marine fish caught near Atlantic salmon farms with a SAV infection history. Isolations of VHSV were made from cleaner wrasse (Labridae) used on Scottish Atlantic salmon farms and VHSV was detected in local wild marine fish. However, these pathogens have been detected in wild marine fish caught remotely from aquaculture sites. These data suggest that despite the large number of samples taken, there is limited evidence for clinical disease in wild fish due to these pathogens (although BKD and furunculosis historically occurred) and they are likely to have had a minimal impact on Scottish wild fish.     

Threshold values of river discharge and temperature for anglers' catch of Atlantic salmon,Salmo salar L.

Abstract The catch by anglers of adult Atlantic salmon, Salmo salar L., was studied over a 5-year period in the River Gaula, Norway. Atlantic salmon were caught over a wide range (23–570 m³ s^?1) of the observed extent of river discharge (13–950 m³ s^?1) and throughout the range of temperature (4–23 °C), but both factors strongly affected catch rate. Significant correlations between the number of Atlantic salmon caught daily, and water temperature (r = 0.33) and river discharge (r = ?0.42) were found in 1987 and 1989, respectively. The highest daily catch occurred between 50 and 150 m³ s^?1, and at temperatures between 13 and 16 °C. Threshold values for water discharge and temperature were found to exist at 250 m³ s^?1 and 8 °C, with the highest catches below and above these values, respectively.     

The risk of individual fish being captured multiple times in a catch and release fishery

The proportion of angled Atlantic salmon Salmo salar L. being caught and released has increased. If individuals are repeatedly captured, this may have fish welfare consequences. Of 995 Atlantic salmon tagged during catch and release in eight Norwegian rivers, 10% were captured twice, while 3% were captured three times within the same fishing season. The probability that released salmon were captured again decreased with decreasing time left of the fishing season, decreased for larger‐sized fish and varied among rivers/years. Increased exploitation rates within the river, indicating an increased fishing pressure, strongly increased the probability that fish would be recaptured. However, the proportion of salmon caught a second time was much lower than the total exploitation rates in the same rivers (which was on average 46%). For fish tagged in the sea, the likelihood of being angled decreased with time since entering the river, which may explain why the recapture rates of caught and released fish were lower than the total exploitation rates.     

Atlantic salmon, Salmo salar L., feed in Scottish coastal waters

Abstract. The stomach contents of 256 Atlantic salmon, Salmo salar L., of fork lengths 53–66cm, caught in bag nets on the Scottish west coast near Ullapool, were examined between June 1983 and July 1986. A total of 61 fish contained fish in the stomach or had faecal pellets containing fish bones in the gut. All recognizable whole fish were sandeels, Ammodytes marinus Raitt, ranging in size from 4.5 to 15cm. No evidence for crustacean or other non-fish prey items was found. Results indicate that feeding salmon were caught up to a certain cut-off point in June or early July, after which all salmon sampled were not feeding. It is suggested that either there is a local feeding stock of salmon or that fish feed during migration from the Faroe Isles or other possible distant water origins.     

Piscine reovirus in wild and farmed salmonids in British Columbia,Canada: 1974–2013

Piscine reovirus (PRV) was common among wild and farmed salmonids in British Columbia, western Canada, from 1987 to 2013. Salmonid tissues tested for PRV by real‐time rRT‐PCR included sections from archived paraffin blocks from 1974 to 2008 (n = 363) and fresh‐frozen hearts from 2013 (n = 916). The earliest PRV‐positive sample was from a wild‐source steelhead trout, Oncorhynchus mykiss (Walbaum), from 1977. By histopathology (n = 404), no fish had lesions diagnostic for heart and skeletal muscle inflammation (HSMI). In some groups, lymphohistiocytic endocarditis affected a greater proportion of fish with PRV than fish without PRV, but the range of Ct values among affected fish was within the range of Ct values among unaffected fish. Also, fish with the lowest PRV Ct values (18.4–21.7) lacked endocarditis or any other consistent lesion. From 1987 to 1994, the proportion of PRV positives was not significantly different between farmed Atlantic salmon, Salmo salar L. (44% of 48), and wild‐source salmonids (31% of 45). In 2013, the proportion of PRV positives was not significantly different between wild coho salmon, Oncorhynchus kisutch (Walbaum), sampled from British Columbia (5.0% of 60) or the reference region, Alaska, USA (10% of 58).     

Incidence of escaped farmed salmon, Salmo salar L., in commercial salmon catches and fresh water in Northern Ireland

External morphological characteristics were used to identify escaped farmed Atlantic salmon, Salmo salar L., in a coastal salmon fishery in County Antrim, Northern Ireland during four fishing seasons and at an adjacent freshwater location (R. Bush) during a 5-year period. Out of a total of 36 326 adult salmon examined in the fishery, 883 (2.4%) were identified as having escaped from sea cages. Annual average values ranged from 0.26% to 4.04% of the fish caught. Occurrence of escapees entering an adult trap in fresh water averaged 0.88%, with a range of 0.13–2.62%, depending on year. No correlation between presence in the marine fishery and in fresh water was evident, the latter year-round figures probably being more indicative of presence of escapees in spawning stocks. Entry to fresh water was significantly later on average for escaped farmed salmon, compared with wild salmon.     

Catchability of Atlantic salmon at high water temperatures: Implications for river closure temperature thresholds to catch and release angling

Warming water temperatures, combined with increased mortality following catch and release, could have synergistic consequences if rivers remain open to catch and release at high water temperatures, and catchability of fish remains similar across water temperatures. Here archived data for Atlantic salmon, Salmo salar L., were used to (a) quantify the influence of water temperature on catchability and (b) refine estimates of absolute catch and release mortality to incorporate the relationship between temperature and catchability. A significant decline in the number of Atlantic salmon caught at warmer water temperatures was found after accounting for the effects of river water height, fishing effort, run duration and year-to-year differences in fish abundance. Overall, absolute catch and release mortalities were predicted to be infrequent at cool river temperatures. At river temperatures sometimes associated with fishing closures, mortality due to the catch and release ranged from 6% to 14%. Although post-release mortality increases with water temperature, it is somewhat compensated by the reduced catchability of Atlantic salmon. Thus, the catchability component of catch and release is an integral consideration when evaluating the effectiveness of river closure temperature thresholds when managing catch and release angling.     

Modelling oxygen consumption rates of post-smolt Atlantic salmon in commercial-scale,land-based farms

Oxygen consumption rates of post-smolt Atlantic salmon (Salmo salar L.) were recorded during various growth trials at four land-based salmon farms in south-west Norway, during the period 1988–1992. Principle component analysis indicated that fish size, water temperature and current speed had the greatest influence on oxygen consumption of fish in all the farms. A multiple regression analysis showed that 70% of the variation in the oxygen consumption could be explained by these three parameters. The predicted effect of fish size, water temperature and current speed on oxygen consumption are consistent with those reported in studies conducted on salmonids held in tunnel respirometers. The model described in this study may be a useful tool for the estimation of oxygen and water requirements needed for the design and operation of land-based farms.     

Quality of Alaska Salmon after Harvesting and Post-Tendering

Nearly 22,000 sockeye salmon (Oncorhynchus nerka) that were caught by gillnetters and delivered to tenders anchored on the fishing grounds were tagged in Alaska during the summers of 2010 and 2011. The fish were chilled in refrigerated seawater and transported, usually within 24 h, to one shore-based processing plant, where they were graded visually. Handling practices, weather conditions, and distance from the fishing grounds to the plant were documented. The closer to the shore plant the fish were caught, the better was the salmon quality. Time, distance, and foul weather had significantly negative impacts.     

Drift diving: A quick and accurate method for assessment of anadromous salmonid spawning populations

The accuracy of drift diving surveys of Atlantic salmon, Salmo salar L. and sea trout, Salmo trutta L., was evaluated by comparing the abundance and size distribution with catches in a fish trap over 6 years in the River Etneelva, western Norway. The population count from drift diving accounted for on average 96.3% of the salmon in the trap after accounting for the catches during fishing. Size structure registered during drift diving corresponded with trap catches of salmon, but the number of small salmon (<3 kg) appeared to be somewhat underestimated, while large salmon (>7 kg) were overestimated in drift diving. For sea trout, the match between drift diving counts and trap registrations was poorer (average 76.3%), but may have been affected by the surveys being performed too late with regards to sea trout spawning time. The study illustrates the utility of drift counting for estimating the entire population of anadromous salmonids in a river.     

Laboratory and field investigations of salmon lice [Lepeophtheirus salmonis (Krøyer)] infestation on Atlantic salmon (Salmo salar L.) post-smolts

Hatchery‐reared 1‐year‐old Atlantic salmon post‐smolts (Salmo salar L.), artificially infected with salmon lice [Lepeophtheirus salmonis (Krøyer)] copepodids, were found to suffer from primary alterations (increased cortisol levels) at early lice stages. Secondary alterations, such as osmotic stress (increased chloride levels), first occurred after the preadult stages of the lice appeared. Fish with the highest salmon lice infections died throughout the experiment. Seven years of field investigation of Trondheimsfjorden showed that Atlantic salmon post‐smolts descending coastal waters can become heavily infected with salmon lice. The migrating post‐smolts were only infected with the chalimus stages, showing that the fish had only recently left the rivers. The infection level, however, varied considerably between the years, and, in 1998, the infection was higher than previous years. The experimental results have been combined with the field data to appraise the consequences of the infection.     

Spawning distribution and abundance of a northern Chinook salmon population

Chinook salmon, Oncorhynchus tshawytscha (Walbaum), is an important biological and cultural resource in Alaska, but knowledge about Chinook salmon ecology is limited in many regions. From 2009 to 2012, spawning distribution and abundance of a northern Chinook salmon population on the Togiak River in south‐west Alaska were assessed. Chinook salmon preferred deeper mainstem channel spawning habitat, with 12% (14 of 118 tags in 2009) to 21% (22 of 106 tags in 2012) of radio‐tagged fish spawning in smaller order tributaries. Tributary spawners tended to have earlier run timing than mainstem spawners. Chinook salmon exhibited extended holding and backout (entering freshwater but returning to saltwater before completing anadromous migration) behaviours near the mouth of Togiak River, potentially prolonging their exposure to fishery harvest. Mark–recapture total annual run estimates (2010–2012) ranged from 11 240 (2011) to 18 299 (2012) fish. Exploitation of Chinook salmon ranged from 36% (2012) to 55% (2011) during the study period, with incidental fishery catches near the mouth of the river comprising the largest source of harvest.     

Seasonal variation in rod recapture rates indicates differential exploitation of Atlantic salmon, Salmo salar, stock components

Abstract  Differential exploitation of the various components of a fish stock can adversely affect the diversity, abundance and long-term survival of the entire stock. Many anadromous salmonid stocks exhibit a seasonal structuring of their run-timing that allows fisheries managers to map monthly rod catches onto stock components. To estimate the rod exploitation levels of the various run-timing groups, fishing guides on the River Spey, Scotland, floy-tagged 786 rod-caught and released Atlantic salmon, Salmo salar L., between 2000 and 2002 and recorded recaptures. Whereas 25% of the fish tagged early in March were recaptured, only 2% of those tagged early in June were caught a second time. Exploitation is biased towards the early-running stock components which current assessments show to be least abundant. Management of Atlantic salmon based on an average exploitation rate is inappropriate.     

Historical changes in age structure of Atlantic salmon, Salmo salar L., in the River Eo, northern Spain

Abstract Variations in the age structure and number of Atlantic salmon, Salmo salar L., running into the River Eo in northern Spain were assessed from catch records of sport fisheries for the period 1949 to 1991. The analysis focused on two periods (1951–1960 and 1981–1991) for which more complete data on fish number, size and age were available. Over the whole period, no evidence for a decline in the total salmon run was found, but the last few years revealed significant changes in both the number and age structure of salmon caught. The catches were mainly composed of multi-sea-winter salmon, and this did not change from the 1950s to the 1980s as the proportion of grilse remained unchanged. However, since 1980, there was a marked decline in both the proportion of 3-sea-winter salmon (versus 2-sea-winter fish) and the frequency of previous spawners among the multi-sea-winter salmon. These changes were probably linked because most of the previous spawners re-entered the river as 3-sea-winter or older salmon. River age of salmon caught in the 1950s was low and constant (about 90% of the catch had smolted at one year) but the mean age of smolting increased in the 1980s.     

Experimental induction of mouthrot in Atlantic salmon smolts using Tenacibaculum maritimum from Western Canada

Mouthrot, or bacterial stomatitis, is a disease which mainly affects farmed Atlantic salmon, (Salmo salar, L.), smolts recently transferred into salt water in both British Columbia (BC), Canada, and Washington State, USA. It is a significant fish welfare issue which results in economic losses due to mortality and antibiotic treatments. The associated pathogen is Tenacibaculum maritimum, a bacterium which causes significant losses in many species of farmed fish worldwide. This bacterium has not been proven to be the causative agent of mouthrot in BC despite being isolated from affected Atlantic salmon. In this study, challenge experiments were performed to determine whether mouthrot could be induced with T. maritimum isolates collected from outbreaks in Western Canada and to attempt to develop a bath challenge model. A secondary objective was to use this model to test inactivated whole‐cell vaccines for T. maritimum in Atlantic salmon smolts. This study shows that T. maritimum is the causative agent of mouthrot and that the bacteria can readily transfer horizontally within the population. Although the whole‐cell oil‐adjuvanted vaccines produced an antibody response that was partially cross‐reactive with several of the T. maritimum isolates, the vaccines did not protect the fish under the study's conditions.     

Atlantic salmon, Salmo salar L., previously infected with Neoparamoeba sp. are not resistant to re-infection and have suppressed phagocyte function

Previous studies have indicated that Atlantic salmon, Salmo salar L., affected by amoebic gill disease (AGD) are resistant to re‐infection. These observations were based upon a comparison of gross gill lesion abundance between previously infected and naïve control fish. Anecdotal evidence from Atlantic salmon farms in southern Tasmania suggests that previous infection does not protect against AGD as indicated by a lack of temporal change in freshwater bathing intervals. Experiments were conducted to determine if previous infection of Atlantic salmon with Neoparamoeba sp. would provide protection against challenge and elucidate the immunological basis of any protection. Atlantic salmon were infected with Neoparamoeba sp. for 12 days then treated with a 4‐h freshwater bath. Fish were separated into two groups and maintained in either sea water or fresh water for 6 weeks. Fish were then transferred to one tank with a naïve control group and challenged with Neoparamoeba sp. Fish kept in sea water had lower mortality rates compared with first time exposed and freshwater maintained fish, however, these data are believed to be biased by ongoing mortalities during the seawater maintenance phase. Phagocyte function decreased over exposure time and freshwater maintained fish demonstrated an increased ability to mount a specific immune response. These results suggest that under the challenge conditions herein described, antigen exposure via infection does not induce protection to subsequent AGD.     

The effects of stocking Atlantic salmon, Salmo salar, in a Norwegian regulated river

Abstract  Stocking is undertaken in the River Suldalslågen, western Norway, to compensate for an estimated annual loss of 20 000 Atlantic salmon smolts, Salmo salar L., caused by regulating the river for hydropower production. The annual contribution to angling catches from stocked hatchery fish varied from 7 to 334 kg, or <15% of the total number caught. Between 160 000 and 250 000 one-summer old fish were stocked, but only between 6 and 10 (<0.005%) were recaptured as adults in the river. Recaptured stocked fish never exceeded 0.03% by number, despite smolts dominating the stocking material in recent years. It is not certain whether the slight increase in catches comes in addition to or at the expense of natural reproduction. In most years more adults were used as parent stock than were caught as offspring. The lack of positive response to stocking is possibly due to lesser age, smaller size and later migration of hatchery smolts, and that seawater tolerance of hatchery smolts is poorly developed, all factors increasing mortality at sea.     

Wild fish are not a significant reservoir for Neoparamoeba pemaquidensis (Page, 1987)

Amoebic gill disease (AGD), caused by the protozoan Neoparamoeba pemaquidensis (Page, 1987) is the most important disease affecting salmon farms in Tasmania. Reservoirs for this protozoan parasite are largely unknown. This study investigated wild fish as a potential reservoir of N. pemaquidensis . A total of 325 wild fish, comprising 12 different fish species, were caught from and around salmon farms and examined for the presence of AGD. None of the wild fish were infected with AGD. In a laboratory trial, seahorse, Hippocampus abdominalis , greenback flounder, Rhombosolea tapirina, and Atlantic salmon, Salmo salar, were challenged with N. pemaquidensis . Neoparamoeba pemaquidensis was detected on the gills on 10 of 15 (66.7%) flounder, nine of 24 (37.5%) seahorses, and six of six (100%) Atlantic salmon. However, paramoebae positive flounder and seahorse lacked the characteristic AGD gill pathology. It is concluded that AGD does not appear in wild fish and wild fish do not seem to be a reservoir of the pathogen.     

Atlantic salmon (Salmo salar) prolactin cDNA sequence and its mRNA expression after transfer of fish between salinities

The Atlantic salmon (Salmo salar) has a life cycle that involves inhabiting both fresh and salt water. The control and maintenance of ionic balance is under control of the endocrine system. Prolactin is reportedly an important hormone for the ionic balance of salts in the body fluids of fish, especially during the periods of time spent in fresh water. An Atlantic salmon pituitary cDNA library was constructed in gt 11, from which a full length Atlantic salmon prolactin cDNA was isolated using a chinook salmon (Oncorhynchus tshawytscha) prolactin cDNA probe. The sequence of this clone (ATPRL-5) was determined. Comparison of this sequence and other published sequences showed all the prolactin genes isolated to date are highly conserved. The expression of the prolactin mRNA from adult and juvenile salmon was studied after transfer between salinities. Expression varied in the predicted manner. Adult salmon transferred to fresh water showed large increases in the prolactin mRNA level compared to control fish (>600% increase after 72 h). Only a small difference was observed when smolts (juvenile salmon) were transferred to salt water.