Genetic diversity of Striga hermonthica and Striga asiatica populations in Kenya

The parasitic angiosperms, Striga hermonthica and Striga asiatica, severely constrain cereal production in sub-Saharan Africa by causing huge losses in grain yield. Understanding the diversity of Striga populations is important because it allows identification of races or biotypes thus improving chances of breeding success. Amplified fragment length polymorphism (AFLP) analysis was used to study genetic diversity among 17 populations of S. asiatica and 24 populations of S. hermonthica from Kenya. A total of 349 DNA fragments ranging from 51 to 500 bp were obtained from four EcoRI and MseI primer combinations. Genetic distances for S. asiatica populations ranged from 0.009 to 0.116 with a mean of 0.032. S. hermonthica populations had a genetic distance that ranged from 0.007 to 0.025 with a mean of 0.015. Only two clusters were found in S. asiatica populations whereas no apparent structure was evident in S. hermonthica populations. There was no evidence of isolation by distance for the two species. Although the low genetic diversity suggests Striga is relatively uniform across the populations studied, it is possible that pathogenicity and virulence genes may be located in genomic regions that were not sampled. The data, however, does not provide evidence to support diversification of both Striga species in the region where the study was conducted.     

A note on the chemical composition, intake and digestion of Striga hermonthica herbage by sheep

Striga hermonthica causes serious crop yield losses in West Africa. Hand pulling, an effective method for the reduction of light infestations, might be encouraged if farmers could use this weed as livestock feed. This study evaluated the chemical composition and the voluntary intake and digestion of S. hermonthica herbage by sheep. Crude protein (g kg⁻¹ dry matter (d.m.)) was 184 in the whole plant, 230 in the leaf and 87 in the stem. Ash content varied from 183 to 253 g kg d.m.⁻¹. The concentration of neutral and acid detergent fibre and lignin in whole pot-grown plants was 364, 278 and 127 g kg d.m.⁻¹ respectively. The digestibility of dry and organic (o.m.) matter was 493 and 657 g kg⁻¹, respectively, and intake of digestible o.m. was 27.1 g kg W^−0.75. The relatively high N and P levels in S. hermonthica warrant further evaluation in terms of its potential use as a source of protein or for compost. Its use as a feed appears to be limited by the high ash content and possibly by anti-nutritional effects on animals. These effects should be further investigated before recommending its use for this purpose.     

Effect of growth medium, Striga seed burial distance and depth on efficacy of Fusarium isolates to control Striga hermonthica in Burkina Faso

Striga hermonthica is a destructive parasite of cereal crops in the semi‐arid tropical zone. Two greenhouse experiments were conducted at Kamboinsé, Burkina Faso, to investigate the effect of inoculum substrate and location of Striga seeds on the ability of 14 indigenous Fusarium isolates to control the parasite. In Expt 1, Fusarium isolates reduced emerged Striga number, Striga vigour and dry biomass. As a result, sorghum dry biomass and grain yield were enhanced. Inoculum substrate did not influence the ability of Fusarium isolates to control Striga. In Expt 2, Fusarium isolates, substrate and their interaction significantly influenced germination of Striga seeds at both 35 and 50 days after sowing. Isolates grown on compost were more effective at reducing germination of Striga seeds than those grown on chopped sorghum straw. The per cent germination of seeds 50 days after sowing, buried at 5 cm depth, was significantly lower than that of seeds buried at 10 cm. At 10 cm depth, Fusarium isolates still reduced Striga seed germination with respect to the control; horizontal planting distance, 5 or 10 cm from sorghum hills, had no effect.     

Integrated management of Striga hermonthica in sorghum using a mycoherbicide and host plant resistance in the Nigerian Sudano‐Sahelian savanna

Striga hermonthica is a major biotic constraint to sorghum production in Nigeria, sometimes causing total yield loss. Recommendations for Striga management often include the use of cultural and agronomic practices, herbicides and host plant resistance when available. The use of biological control has not been commercialized. Fusarium oxysporum (isolate PSM 197)‐based mycoherbicide was used in combination with selected sorghums (the Striga‐resistant cultivar Samsorg 40, and the Striga tolerant landrace Yar'ruruka) as an Integrated Striga Management strategy (ISM) in on‐farm trials in the Sudano‐Sahelian savanna of Nigeria. Crop stands were significantly (P = 0.05) higher in ISM compared with non‐ISM plots on which the mycoherbicide was not applied. Similarly, ISM plots had significantly (P = 0.05) lower Striga counts than non‐ISM plots. Striga emergence was reduced by ISM by around 95%. Sorghum yields were 49.6% higher where integrated management was used. Cost benefit analysis of the ISM package shows that use of the mycoherbicide increased the profitability of sorghum production on Striga‐infested soils. Farmers’ preferences monitored during and after the trials highlighted the need for careful selection and integration of control components into an ISM package.     

Use of random amplified polymorphic DNA (RAPD) to identify races 1, 2, 4 and 8 of Fusarium oxysporum f. sp. dianthi in Italy

The RAPD fingerprinting procedure was used in combination with pathogenicity assays on differential cultivars to characterize a representative collection of 72 Fusarium spp. isolates of different geographic origin collected from diseased carnation. In F. oxysporum f. sp. dianthi, isolates were grouped according to the physiologic race: group 1 included isolates of race 4; group 2 was formed by isolates of race 2 and single representatives of races 5 and 6; group 3 included isolates of races 1 and 8. No correlation was found between RAPD data and geographic origin of the isolates tested: representatives of race 2 isolated in Italy, Israel and Japan had the same amplification profile. Three isolates which showed a low level of pathogenicity on all carnation cultivars tested shared an identical amplification pattern and are probably saprophytic F. oxysporum. Finally, two F. redolens isolates from Japan and seven non-pathogenic isolates of F. proliferatum collected from diseased carnation in Italy, Israel and The Netherlands were clearly distinguishable according to their RAPD fingerprint. The results are discussed in relation to previous studies on the genetic diversity of F. oxysporum f. sp. dianthi and to the development of forma specialis- and pathotype-specific diagnostic tools.     

Evaluation of Galium species and populations using morphological characters and molecular markers

Three Galium species are believed to be present across western Canada: Galium aparine, Galium spurium and Galium boreale. Galium spurium and G. aparine are very difficult to distinguish morphologically, which is problematic for crop consultants and weed surveyors, and could have implications for control measures. Molecular techniques could potentially make identification easier and more rapid than using chromosome counts, as is currently done. The objective of this study was to identify morphological traits and/or genetic polymorphisms capable of species differentiation. To this end, Galium seed of unknown speciation were collected from nine field populations across western Canada and, along with two reference samples of G. spurium and G. aparine, were characterised for both morphological traits and their ribosomal ITS1‐5.8S‐ITS2 genomic sequence. In addition, single nucleotide polymorphism variation within the highly conserved 5.8S ribosomal RNA gene was identified that could consistently differentiate Galium species. Sequence analysis of the ITS1‐5.8S‐ITS2 region of field collections from western Canada indicated that all samples were G. spurium and all were highly related to each other. These results were supported by a distinct lack of variation in morphological traits, as nearly all plant traits measured did not differ between populations. This suggests that all sampled populations, and perhaps most of the Galium populations across western Canada, are derived from a single species, G. spurium.     

Characterisation ofFusarium oxysporum isolated from carnation in Australia based on pathogenicity,vegetative compatibility and random amplified polymorphic DNA (RAPD) assay

Isolates ofF. oxysporum collected from symptomless carnation cuttings from Australian carnation growers properties, together with isolates from national collections, were screened for pathogenicity and grouped according to vegetative compatibility and random amplified polymorphic DNA (RAPD) patterns. The collection of 82 Australian isolates sorted into 23 different vegetative compatibility groups (VCGs). Of 69 isolates tested for pathogenicity, 24 were pathogenic to carnations, while the remaining 45 were non-pathogenic. All pathogenic isolates were within two VCGs, one of which was also compatible with an isolate obtained from an international culture collection, and which is known to represent VCG 0021 and race 2. Race status of the two pathogenic VCGs remains unknown. The RAPD assay revealed distinct DNA banding patterns which could distinguish pathogenic from non-pathogenic isolates as well as differentiate between isolates from the two pathogenic VCGs.     

Genetic diversity of the annual weed Monochoria vaginalis in southern China detected by random amplified polymorphic DNA and inter-simple sequence repeat analyses

Two molecular genetic screening techniques, RAPD (random amplified polymorphic DNAs) and ISSR (inter-simple sequence repeats), were applied to detect the level and pattern of genetic diversity of Monochoria vaginalis, a common weed of rice fields, in seven populations from southern China. Among these populations, 116 bands were amplified by 18 RAPD primers, of which 34 bands (29.31%) were polymorphic, and 14 ISSR primers produced 111 bands with 87 polymorphic bands (78.38%). Within each population, a relatively low level of genetic diversity was detected by both RAPD and ISSR analyses, with a mean genetic diversity (H) of 0.0348 and 0.0551 respectively. Analysis of molecular variance of the data from the RAPD and ISSR markers detected that the majority of total genetic variation existed among populations (73.50% and 76.70% respectively) and only minor genetic variation within populations (26.50% and 23.30% respectively). Cluster analysis divided the seven populations into two groups, indicating that the genetic relationships among populations have relatively low correlation with their geographical distribution (Mantel test; r = 0.45 and 0.48 respectively). Our results indicated that both RAPD and ISSR markers were effective and reliable for accurately assessing the degree of genetic variation of M. vaginalis. Comparing the two techniques, ISSR markers were more efficient than the RAPD assay. The Mantel test gave r = 0.16, suggesting no correlation between these two molecular markers.