Exploration, collection and characterisation of Basmati rice germplasm in India

Eighty-eight long, slender, scented Basmati rice germplasms were collected from North India during an exploration mission. Morpho-agronomic characterisation of the accessions revealed a significant variability in leaf length, culm length, culm number and panicle length.     

Trade-offs between on-farm varietal diversity and highly client-oriented breeding — a case study of upland rice in India

On-farm varietal diversity is now highest in marginal agricultural environments because, unlike the case in more favourable areas, modern varieties have not been a sufficiently attractive option for farmers to replace their landraces. However, the continued survival of landraces on farm is dependent on the continuing failure of plant breeding to provide better alternatives. Highly client-oriented breeding can produce suitable modern varieties for areas that were dominated by landraces. We examine here the case of the adoption of two upland rice varieties in three states in eastern India, Jharkhand, West Bengal and Orissa, where our surveys had confirmed low adoption of modern varieties in the upland ecosystem. The two new upland varieties were readily accepted by farmers who rapidly adopted them on large proportions of their land. On-farm diversity is maintained by the need to trade-off among varieties but once a variety with overall superiority was found this incentive was removed. The new varieties from the client-oriented breeding did not have weaknesses that farmers had to trade-off against their landraces so they were more likely to replace them. They also replaced older modern varieties. Farmers had previously maintained them along with landraces because they had to trade-off the higher yield of Kalinga III against the more stable yield of landraces or the higher yield of Vandana against the higher gain quality of the landraces. Only mean count per household could be used to test the significance of the differences between individual years. In all states, this revealed a significant reduction in landrace diversity with the adopting farmers when the addition of the two new varieties was not considered. Trends across years for mean varietal count, total count and Shannon–Wiener index showed a significant decline in Orissa, irrespective of whether the two new varieties were included in the analysis or not. In Jharkhand there was a significant decline only for mean count when the new varieties were not included. In Orissa, it was possible to test if rare landraces were as readily replaced as more common ones. Landrace replacement was unmitigated by increasing rarity yet the most rare landraces have the highest priority for genetic conservation. Some landraces were completely replaced by the farmers in the sample despite a diverse variety portfolio being a risk-reducing strategy in a region where there is a high risk of crop failure. There was little environmental heterogeneity in the marginal, drought-prone areas to slow this decline. The new varieties had an impact on the farming system because sometimes farmers brought additional upland into cultivation. They also introduced these varieties into more favourable, medium land. The strategy of releasing two new upland varieties met with some success in maintaining diversity.     

Sources of nitrogen and yield advantages for monocropping and mixed cropping with cowpeas (Vigna unguiculata L.) and upland rice (Oryza sativa L.)

Summary Sources of N used by cropped and intercropped cowpeas and rice were determined by the ¹⁵N isotope-dilution technique. The biological efficiency of intercropping cowpeas and rice was assessed by calculating the land equivalent ratio of dry matter yield, total N, and uptake of N. A reduced N uptake by both cowpeas and rice during mixed cropping was attributed to mutual competition, with both crops competing effectively for the scarce environmental resources. The lack of a significant difference in the uptake of fertilizer and soil N by mixed-crop rice and cowpeas is an indication that the soil N was sufficient and that the mixed cropping did not create any imbalance in soil and fertilizer N uptake. The land equivalent ratio ranged between 120% and 180% for shoot dry matter and total N, showing that biological efficiency was increased by intercropping cowpeas with rice. The proportion of N derived from the atmosphere by mono- and intercropped cowpeas was not significantly different, showing that the potential of cowpeas to fix N₂ was independent of the cropping system, since the rice did not stimulate the cowpeas to fix more N₂.     

Selection of efficient vesicular-arbuscular mycorrhizal fungi for wetland rice (Oryza sativa L.)

Summary We tested the response of the wetland rice cultivar Prakash to inoculation with ten vescular-arbucular mycorrhizal (VAM) fungi (three selected from the first screening and seven isolated from local paddy fields) in a pot experiment under flooded conditions in order to select the most efficient mycorrhizal fungi to inoculate the rice nursery. A sandy clay loam soil was used as the substrate, fertilized with the recommended N and K levels (100 kg N ha^–1 as ammonium sulphate and 50 kg K ha^–1 as muriate of potash) and half the recommended level of P (25 kg ha^–1 as super phosphate). The inoculation was made into dry nursery beds and the beds were flooded when the seedlings were about 25 cm high, in 15 days. Twenty-eight-day old seedlings were transferred to pots filled with well puddled soil flooded with 5 cm of standing water. Based on the increase in grain yield and total biomass, Glomus intraradices and Acaulospora sp. were considered efficient and suitable for inoculation into rice nurseries.     

Nitrogen contribution to wetland rice by green manuring with Sesbania spp. in an alkaline soil

Summary Two annual species of Sesbania, S. aculeata and Sesbania sp. PL Se-17, were field evaluated as green manure for wetland rice in an alkaline soil. The two species were raised as a catch crop during summer in a wheat-rice rotation, and added as 24.7 and 20.8 t ha^–1 of green matter, 116 and 98 kg N ha^–1, respectively, after 45 days of growth. For the optimum green manuring effect on rice grain yield and N uptake, S. aculeata required 5 days of decomposition (after turning in and before rice transplantation), whereas no decomposition period was necessary for Sesbania sp. PL Se-17. The effect on grain yield and N uptake of rice was equivalent to an application of 122 and 78 kg ha^–1 of chemical N, for the two species, respectively. There was no residual effect of the green manuring on the soil N status after rice harvest.     

Inter-Simple Sequence Repeat fingerprints to assess genetic diversity in Tunisian fig (Ficus carica L.) germplasm

The genetic diversity of 18 Tunisian fig cultivars was investigated at the DNA level using the Inter Simple Sequence Repeat (ISSR) associated with the Polymerase Chain Reaction (PCR). Using a set of primers, the most informative ones were selected that were characterized by an important Resolving power value of 29.6. A total of 47 discernible fragments were scored from samples, with a mean of 11.7 fragments per primer. The 90.4% of sample that were polymorphic were scored as molecular markers to examine the Tunisian fig germplasm polymorphism at DNA level. A large genetic diversity as related to ISSR patterns was found within the local Tunisian fig germplasm. An UPGMA dendrogram exhibits the unstructured variability in this crop. Moreover, the principal component analysis shows that the observed diversity was typically continuous. Our data provide a large number of ISSR markers that are useful in the fingerprinting of Ficus carica L. cultivars, and in the understanding of the genetic relationships among these accessions.     

Denitrification losses from puddled rice soils in the tropics

Summary Although denitrification has long been considered a major loss mechanism for N fertilizer applied to lowland rice (Oryza sativa L.) soils, direct field measurements of denitrification losses from puddled rice soils in the tropics have only been made recently. This paper summarizes the results of direct measurement and indirect estimation of denitrification losses from puddled rice fields and reviews the status of research methodology for measurement of denitrification in rice fields. The direct recovery of (N₂+N₂O)-¹⁵N from ¹⁵N-enriched urea has recently been measured at sites in the Philippines, Thailand, and Indonesia. In all 12 studies, recoveries of (N₂+N₂O)-¹⁵N ranged from less than 0.1 to 2.2% of the applied N. Total gaseous N losses, estimated by the ¹⁵N-balance technique, were much greater, ranging from 10 to 56% of the applied urea-N. Denitrification was limited by the nitrate supply rather than by available C, as indicated by the values for water-soluble soil organic C, floodwater (nitrate+nitrite)-N, and evolved (N₂+N₂O)-¹⁵N from added nitrate. In the absence of runoff and leaching losses, the amount of (N₂+N₂O)-¹⁵N evolved from ¹⁵N-labeled nitrate was consistently less than the unrecovered ¹⁵N in ¹⁵N balances with labeled nitrate, which presumably represented total denitrification losses. This finding indicates that the measured recoveries of (N₂+N₂O)-¹⁵N had underestimated the denitrification losses from urea. Even with a probable two-or threefold underestimation, direct measurements of (N₂+N₂O)-¹⁵N failed to confirm the appreciable denitrification losses often estimated by the indirect difference method. This method, which determines denitrification losses by the difference between total ¹⁵N loss and determined ammonia loss, is prone to high variability. Measurements of nitrate disappearance and ¹⁵N-balance studies suggest that nitrification-denitrification occurs under alternate soil drying and wetting conditions both during the rice cropping period and between rice crops. Research is needed to determine the magnitude of denitrification losses when soils are flooded and puddled for production of rice.     

低氮胁迫下水稻叶片叶绿素含量的QTLs

Quantitative trait loci (QTLs) for chlorophyll content of a rice leaf were mapped on to the molecular marker linkagemap of a double-haploid (DH) population derived from a cross between two rice varieties ‘IR64‘ and‘Azucena‘ in bothnutrient solution and soil culture experiments to detect rice nitrogen nutrition status under low N stress. A chlorophyllmeter was used to measure the soil plant analysis development (SPAD) value of the topmost fully expanded leaf as theindex of chlorophyll content that expressed nitrogen status in rice plants. Totally 3 QTLs for SPAD values, two onchromosome 3 located at interval RG179-CDO337 and RG348-RZ329, respectively, and one on chromosome 10 at intervalRZ500-RG134, were detected under stressed conditions of low N in the soil and/or nutrient solution culture experiments.One QTL located at interval RG179-CDO337 on chromosome 3 associated with a relative change in SPAD value from ahigh N level to a low N level in the soil culture experiment was also detected. Based on the different responses to low Nstress between the two parents, it was supposed that the QTLs identified in this study associated with nitrogen efficiencyin rice at low N levels might be useful in applying marker technology to rice breeding programs.     

Genetic Erosion from Modern Varieties into Traditional Upland Rice Cultivars (Oryza sativa L.) in Northern Thailand

The purpose of this study was to assess the extent of genetic erosion of traditional upland germplasm in northern Thailand as a result of gene-flow from distinct strains carrying different genotypes. Even modern variety specific markers have not been developed, there is a comparative population in Laos. Thus, both populations were compared with various characters to evaluate gene-flow from modern variety to landraces. Glutinous and glabrous strains are predominated in Laos. However, such strains were drastically decreased in north–east Thailand. Gene diversity is higher in Thailand, compared to Laos at seven isozyme loci. This was a result of the higher frequencies of Indica strains and heterozygotes in Thailand. Plastid type was also determined by using an INDEL marker. Nearly half of Indica strains carried the Japonica plastid. Heterozygotes also tended to carry Japonica cytoplasm. Such nuclear–cytoplasm substituted strains and heterozygotes were probably generated by natural hybridization. Japonica strains tended to be a maternal donor rather than Indica ones. Or Indica strains would easily release pollens, which grow outside of upland fields.     

Physiological enhancement of early growth of rice seedlings (Oryza sativa L.) by production of phytohormone of N2-fixing methylotrophic isolates

Three plant-growth promoting, N₂-fixing methylotrophic strains isolated from rice cultivars (Oryza sativa L.), viz, Methylobacterium sp. CBMB20, Enterobacter sp. CBMB30, Burkholderia sp. CBMB40, were selected, and their activities in promoting the early growth of rice were studied. Seeds treated with the methylotrophic strains improved seed germination, seedling vigor index (SVI), and biomass of rice seedlings. The methylotrophic population in the treated seedlings increased in the vegetative stages when compared to seeding stages. Treated seedlings showed a higher accumulation of plant hormones viz trans-zeatin riboside, isopentenyladenosine, and indole-3-acetic acid than untreated seedlings. Plant hormones were detected immunologically using the phytodetek kit. Conformational evidence suggested that cytokinins were produced by the epiphytic bacteria colonizing the plants rather than by the plants themselves. In addition, the inoculated early stage rice seedlings also exhibited a wide range of acetylene reduction activity. The results suggest the potential use of these bacteria to stimulate germination, SVI, and biomass production, which is mediated by production of plant hormone accumulation and nitrogen fixation.     

Effect of Leucaena leucocephala (Lam) de Wit. as a green manure on nitrogen uptake and yield of rice

Summary Field studies were conducted over two seasons to examine the effect of Leucaena leucocephala as a green manure on the N uptake and yield of rice grown under lowland conditions. The treatments were 0, 4, 8, and 12t Leucaena ha^-1 with 0,44, and 88 kg N ha^-1 as urea in a factorial combination. N uptake was evaluated at maximum tillering, panicle initiation, and harvest. The incorporation of Leucaena increased N uptake throughout the vegetative period in both seasons, irrespective of the mineral-N level. At all levels of N, the grain yield increased significantly following the incorporation of Leucaena, and in both seasons the Leucaena treatment of 8 t ha^-1 was almost as effective as the highest mineral-N application.     

硅锰结合施用对红壤水稻铁毒害的矫正

Based on the fact that Fe toxicity which is usually characterized by leaf oranging and low yield can be obviously subdued by application of Si or Mn due to counteraction.between Fe and Si or Mn.A pot experiment was conducted with four treatments of CK,Si,Mn and Si Mn to further study the effect of combined application of Si and Mn on rice growth on red earths.Water-soluble SI,Fe and Mn were measured.and electron probe was used to study Si,Mn,Fe and Ca in root cross sections.Combined application of Si and Mn could increas water-soluble Si and Mn but reduce water-soluble Fe,thus being favorable for correctiong Fe toxicity.Electron probe study showed obvous differences of Si,Fe,Mn,and Ca in rice roots between CK and the other three treatments.The combined applicatioin of Si and Mn could reduce leaf oranging and improve rice growth.The Si Mn treatment had a higher plant height,lower number of oranging leaves and a 25.0% higher rice yield than CK and showed a better effect on rice growth than the treatment of sole Si or Mn.     

磷胁迫下蔗糖对水稻苗期根适应性和磷酸转运蛋白基因表达的影响

磷是植物生长和发育中最重要的必须元素之一。尽管土壤中磷资源很丰富,但大部分磷是以植物不能吸收利用的固定态和有机态存在,特别是以酸性土壤为主的南方稻田,水稻缺磷现象非常严重。理解和掌握水稻对低磷的适应机制有助于利用分子手段培育磷高效利用水稻品种。为阐明蔗糖提高水稻耐低磷的机制,本研究对水稻幼苗进行不同磷、糖处理,分析水稻幼苗在不同磷糖配比培养基中的根系结构、无机磷、酸性磷酸酶活性的变化,并利用定量RT-PCR技术分析水稻磷酸转运蛋白基因(OsPT)和酸性磷酸酶基因(OsSAP1)的表达。试验设2个磷浓度:无磷和85 mg·L?1KH2PO4,2个蔗糖浓度:无糖和3%蔗糖,正交设计。结果表明,在低磷胁迫时添加蔗糖,能使水稻幼苗的根总长度、总根数、根冠比显著增加,根分泌的酸性磷酸酶活性降低,但水稻体内的磷酸转运酶活性提高。11个与磷具有高度亲和力的磷酸转运酶的表达发生了改变,其中根优势表达的4个基因OsPT2、OsPT3、OsPT4、OsPT6对磷、糖的影响最为敏感,暗示了蔗糖是通过调节磷转运蛋白维持磷的吸收和平衡。增加根系的蔗糖分配能够提高水稻幼苗对磷胁迫的耐受性。     

Spatial and temporal dynamics in genetic diversity in upland rice and late millet (<Emphasis Type="Italic">Pennisetum glaucum</Emphasis> (L.) R. Br.) in The Gambia

Ambiguity exists about the level of genetic diversity represented by farmer crop varieties, how it develops over time and how it relates to the diversity comprised by formal varieties. As part of an interdisciplinary technological/sociological study on farmer management of gene flow, upland rice (Oryza sativa L.) and late millet (Pennisetum glaucum (L.) R.Br.) from The Gambia were investigated for morphological and molecular variation. The goal of these analyses was to obtain insight into the level of crop genetic diversity of farmer’s materials planted in several case study villages in The Gambia. For both crops, samples were collected from villages and various research institutes. Based on variety names, different rice and millet varieties were expected to be used in different villages. In fact, there was a large overlap in genetic diversity for both crops, masked by the use of synonyms. The considerable similarity in rice genetic diversity between villages most likely results from the exchange of varieties between farmers. For millet this seems the result of development of varieties from the same gene pool. Some farmer varieties of rice, however, are apparent hybrid forms between the species O. sativa and O. glaberrima Steud., and farmer varieties in general displayed higher levels of genetic diversity than formal varieties. This indicates that, for rice, genetic diversity develops in farmers’ fields and may have potential use in formal breeding programs.     

Response of rice to sulphur application under upland conditions

Abstract

A greenhouse experiment was carried out to determine the S response and the plant S content of rice (Oryza sativa L.) cultivars OS‐6 and IR‐20 grown in sandy Apomu soil series under upland conditions.

Sulphur application increased growth and dry matter yield. At low S rates OS‐6 gave higher grain yield than IR‐20. With high S rates, OS‐6 responded more in straw production. The leaf S content was highest during early growth and decreased with plant age. At flower emergence, the blade of the Y‐leaf appeared to be a suitable index for measuring the S status of the plant. The critical S level was estimated at 0.15%. The critical S levels in the grain and straw at harvest were estimated respectively at 0.12%, and 0.10%. The N/S ratios for the grain and straw at harvest appeared not to be a useful index for determining the critical S status of the plant.     

Relative significance of soil and nitrogenous fertilizer in nitrogen nutrition and growth of wetland rice (Oryza sativa L.)

Summary A pot experiment was conducted to compare the yields from five commercially cultivated varieties (Bas-198, Bas-370, Bas-Pak, Bas-385, and IR-6) of rice (Oryza sativa L.) and to establish the relative significance of soil N and fertilizer N (¹⁵N-labelled ammonium sulphate) in affecting crop performance. Another aim was to study the interaction of fertilizer N and soil N as influenced by different rice varieties. Among the five varieties tested, Bas-Pak gave the maximum dry matter and N yield. The N-use efficiency (percentage of applied N taken up by the plants) of different varieties ranged between 33.7 and 43.7%, Bas-Pak being the most efficient. Significant losses of fertilizer N occurred from the soil-plant system. The maximum N loss (52.1% of applied N) was observed with IR-6 and the minimum loss (39.2%) with Bas-Pak. A substantial increase in the uptake of soil N following the application of fertilizer and an interaction between the two N sources were observed with all varieties except Bas-385. The interaction was attributed to greater root proliferation following the application of fertilizer. It was concluded that a varietey with greater potential to use soil N is likely to give a better yield and that, of the two N sources, the availability of soil N was more important in determining the yield performance of different varieties of rice.     

Quantitative trait diversity in tef [ Eragrostis tef (Zucc.) Trotter] germplasm from Central and Northern Ethiopia

One thousand and eighty tef, Eragrostis tef (Zucc.) Trotter, entries representing 36 populations collected from six central and northern regions of Ethiopia were evaluated at Debre Zeit Agricultural Research Center during the 1995 main season to assess the quantitative trait diversity in the germplasm with respect to collection regions and altitude zones. Hierarchical analysis of variance showed large (p 0.01) variations within populations, and among populations within regions and altitude zones in all the 14 traits studied. The variations among regions were significant (p 0.05) for number of main shoot culm nodes, and panicle branches and spikelets. But only days to maturity, number of culm nodes, diameters of the two basal culm internodes, and harvest index depicted discernible (p 0.05) clinal variability. The 36 populations clustered into six major (75% similarity level) groups consisting of two up to 15 populations. Five principal components (PCs) explained about 81% of the entire phenotypic diversity among the populations. Of these, the first three PCs accounted for about 65% of the gross variance. About 31% of the total variance explained by the first PC alone originated chiefly from variability in main shoot panicle grain yield and length, culm length and diameter of the two basal culm internodes. Likewise, about 23% the variance accounted for by the second PC was due mainly to variations in grain and shoot phytomass yield/plant, and harvest index. Overall, the study demonstrated that tef is a highly versatile crop species and the enormous wealth of quantitative trait diversity in the germplasm indicates immense potential for the genetic improvement of the crop through breeding.     

不同水分条件下旱稻水分利用效率的研究

田间试验研究不同水分条件下旱稻水分利用效率结果表明 ,“旱稻 50 2”、“津稻 3 0 5”拔节期和开花期净光合速率、蒸腾速率及水分利用效率日变化规律一致 ,叶片净光合速率和蒸腾速率均呈中间高、两头低变化趋势 ,水分利用效率均呈“L”型趋势。充分灌溉和水分胁迫处理“旱稻 50 2”叶片水分利用效率均大于“津稻 3 0 5”。“旱稻50 2”和“津稻 3 0 5”农业用水 (灌溉 降水 )水分利用效率均低于灌溉水水分利用效率 ,2品种水分胁迫处理下灌溉水水分利用效率均高于充分灌溉处理 ,“津稻 3 0 5”农业用水和灌溉水水分利用效率均低于“旱稻 50 2”。