Comparative efficiency of honeycomb and conventional pedigree methods of selection for yield and fiber quality in cotton (Gossypium spp.)

The effectiveness of honeycomb pedigree selection (HPS) as compared to conventional pedigree selection (CPS) was studied in one intraspecific (G. hirsutum L. × G. hirsutum L.) cross population (population I) and one interspecific (G. hirsutum L. × G. barbadense L.) cross population (population II). Combined selection for yield and lint quality traits was applied for four cycles at two locations for population I and atone location for population II. Finally, the best F₆ lines derived by each method, together with the unselected population derived by single seed descent (SSD) and three check cultivars, were tested in comparative experiments, separately for each cross, at the same locations. In both populations the analysis of variance indicated significant differences among the groups of the material tested for seed cotton yield, mean boll weight, micronaire reading, staple length, and uniformity ratio. No significant differences were found with respect to plant height, lint percentage, and fiber strength in population I and with respect to lint percentage and fiber strength in population II. In population I, on the basis of mean seed cottonyield and number of superior lines derived by each method as compared to the check varieties and the unselected SSD population, HPS-lines were superior to CPS-lines for seedcotton yield, fiber length and boll weight. HPS-lines, however, did not differ significantly in seedcotton yield from the best check cultivar Eva. Finally, the material derived by CPS was earlier in maturity than the material derived by HPS and SSD. Also in population II, on the basis of mean seedcotton yield and number of superior lines derived by each method as compared to the unselected SSD population, HPS-lines were superior to CPS-lines. No significant differences, however, were identified between the material of the two methods for lint quality traits. It was concluded that in both populations HPS was more effective than CPS in identifying lines with high yielding ability and good lint quality. This superiority of HPS is attributed, at least partially, to its effectiveness in early generation selection. This revised version was published online in August 2006 with corrections to the Cover Date.     

Effectiveness of honeycomb selection for yield superiority at three interplant distances: a field simulation study using chickpea (Cicer arietinum L.) inbred lines

The effect of interplant distance on differentiation and selection a) of the superior lines from a mixture of inbred lines, and b) of individual plants originating from the top lines, was studied in chickpeas (Cicer arietinum L.). For this, 28 chickpea inbred lines were evaluated on a single plant basis in a honeycomb design and in the same field at three interplant distances, for four growing seasons, at Larissa, Greece. The interplant distances were 15 cm (520000plants/ha, strong allo-competition), 30 cm(128630 plants/ha, medium allo-competition) and 100 cm (11500plants/ha, without competition). In addition, the inbred lines were evaluated in replicated plot trials under an agronomically accepted plant stand (520000plants/ha, crop environment) and the ranking of the 28 lines based on the average yield per plot over growing seasons was determined. Selection was applied in each season for each interplant distance and the three and six top lines with the highest average yield per plant were identified. These top lines from each interplant distance were compared with the three and six top lines(say: proven superior lines) identified after their evaluation under crop environment over seasons. In addition, selection was applied at the individual plant level with six selection pressures in each season and each interplant distance. Then we determined for each experiment and selection pressure the number of the selected plants which belonged to the six proven top lines. It was observed that the ranking obtained under crop environment was best correlated with the ranking at the intermediate interplant distance (30 cm), followed by the ranking at the high interplant distance (100 cm). In contrast this correlation was very weak for the ranking at low interplant distance (15 cm).In addition, the interplant distance identifying the highest number of the proven high yielding lines after their evaluation in one season was the intermediate interplant distance followed by the high interplant distance and certainly not the low interplant distance. The relative effectiveness was further increased when selection was based on average performance of the lines across seasons. This, together with the relatively small number of seeds produced per plant, renders selection at low interplant distance less favorable than selection at the intermediate or high interplant distance.The individual plant selection was effective at all three interplant distances. Selection effectiveness generally increased as the selection pressure increased. Again the best results were obtained when selection was applied at intermediate or at high interplant distance. It was concluded that line selection as well as individual plant selection was more effective at intermediate interplant distance and certainly not at low interplant distance. This revised version was published online in July 2006 with corrections to the Cover Date.     

Multistage selection indices for maximum genetic gain and economic efficiency in red clover

Selection index updating, a method of multistage selection, allows breeders to determine the optimal truncation point of each stage so that the aggregate genetic gain (▵H) or the gain to cost ratio (▵H/C) is maximum. In this study, we demonstrated the use of selection index updating on selection of red clover (Trifolium pratense L.). We determined the optimal selection schemes that optimized the balance between cost saving and lowered genetic gain in multistage selection. A total of 78 red clover half-sib families were evaluated for petiole length (PL), seedling vigor (Vig) measured at the seedling stage, and canopy height and individual plant dry weight recorded on initial growth (CH1 and DW1) and regrowth (CH2 and DW2). Alternative selection schemes with different number of stages, traits, and proportions selected at various stages were examined to maximize either ▵H or ▵H/C. Single stage index selection had a greater predicted genetic gain than multistage selection, but it was also associated with higher costs. Early culling at the seedling stage resulted in significant cost savings and increased gain to cost ratio. The ratio was 9.857 or more with early culling and 3.062 or less without seedling selection. The most efficient selection programs consisted of PL, Vig, DW1, and DW2. Inclusion of CH1 and CH2 into the selection indices did not contribute to the increase of the total genetic gain, nor to the increase of the ratio. This revised version was published online in July 2006 with corrections to the Cover Date.     

The effect of interplant distance on the effectiveness of honeycomb selection in spring rye. III. Accumulated results of five selection cycles

The effect of interplant distance on the efficiency of mass selection was studied by performing five cycles of honeycomb selection at two interplant distances (d), i.e. d = 100 cm (low plant density, implying absence of interplant competition) and d = 15 cm (high plant density, implying presence of intergenotypic competition). The offspring of plants selected either at low or at high plant density were compared, both at high plant density and at low plant density, with the original population (in fact: offspring of plants taken at random from this population). At high plant density offspring of plants selected at high density performed better than the original population for most of the characters recorded on a per plant basis. At low plant density offspring of plants selected either at high or at low density performed better than the original population for the characters recorded on a per plant basis. The selections differed, however, significantly from each other: the offspring of plants selected at low density performed better. As the latter did not occur at high density genotype × density interaction was indicated. It is concluded that mass selection should be applied at the plant density used in commercial practice. This revised version was published online in July 2006 with corrections to the Cover Date.     

The effect of interplant distance on the effectiveness of honeycomb selection. II. Results of the second selection cycle

Summary For a second consecutive generation, the efficiency of the honeycomb selection procedure was observed at low and at high density, i.e. interplant distance being 100 cm and 15 cm respectively. Progress due to selection was determined for each of the two plant densities applied by comparing the performance of offspring from selected plants with that of offspring from plants taken at random. The relation between selection intensity and selection response was observed to study the relation between competing and yielding ability in presence and in absence of interplant competition.Compared to results obtained in a previous generation, it is now dared to be more positive about the perspectives of selection in absence of interplant competition. It is tentatively concluded that single plant selection for yield at wide spacing gives a higher progress and allows a better identification of outstanding genotypes. However, the superiority of selection at low density is not confirmed neither by any estimator of a quantitative genetic parameter nor by the correlation between single plant yield and plot yield of their offspring. The disturbing factors found already in the former generation, namely variation in seed quality and a biased sample of random plants, exerted a less important role in the estimation of the progress. Nevertheless, it is believed that only when they can be reduced more reliable results can be achieved.     

Indirect selection for grain protein and grain yield in winter wheat

Summary The efficiency of the honeycomb selection procedure in selecting outstanding genotypes was observed at two interplant distances (d), i.e. d=100 cm, low density, representing noncompetitive conditions and d=15 cm, high density, representing presence of interplant competition. Progress due to selection among the plants grown with and without competition was established by comparison of the plot performance of offspring from selected plants with that of offspring from plants taken at random. The relation between selection intensity and response to selection was observed to detect a possible negative correlation between competing and yielding ability.So far, the results obtained do not yet allow to make a choice between selection of individual plants in presence or in absence of interplant competition. No significant correlation between single plant yield and plot yield was found at any of the two densities. However, response to selection for yield was higher when selecting at low density supporting Fasoulas' preference for selecting single plants in absence of competition. These results must be taken with caution since seed quality and a biassed sample of random plants exerted an important effect on the obtained response to selection.     

Three cycles of honeycomb selection for herb yield in davana (Artemisia pallens Wall.)

Summary Three cycles of honeycomb selection for herb yield, applied on widely spaced individual plants of davana (Artemisia pallens Wall.), resulted in an increase in yield of 12.4% per cycle when the resulting populations were evaluated at commercial plant density. The selection had no adverse effect on essential oil content, davanone content in oil and plant height.     

The efficiency of between and within full-sib family selection in a recurrent selection programme in sugar beet (Beta vulgaris L.)

The efficiency of between and within family selection in a full-sib family recurrent selection programme was investigated using data from three cycles of recurrent selection. Correlations between mid-parent values and offspring were high for sugar content and juice purity characters, but low for root weight and sugar yield. This suggests that single root selection within full-sib families is effective in the improvement of sugar content and juice purity, but ineffective for root weight and sugar yield. Root weight and sugar yield will respond better to between full-sib family selection. This revised version was published online in July 2006 with corrections to the Cover Date.     

Effectiveness of early generation selection under two plant densities in faba bean (Vicia faba L.)

The effectiveness of early generation selection under low and high plant density was evaluated in faba bean (Vicia faba L.). For this, the faba bean cv. 'Polycarpe' was pollinated by eight higher yielding cultivars of different origin. The F₁'s and F₂'s together with 'Polycarpe' and the pollinator with the highest yielding ability (cv. 'Effe') were evaluated under high plant density with adjacent controls and under low plant density in a honeycomb design. It was found that the eight hybrids had a different ranking at low than at high plant density for both generations (F₁and F₂). Hybrid Pol.x A-58 had the best combined yield performance in the F₁and F₂under high and hybrid Pol.x A-37 under low plant density. Application of individual plant selection in the F₂and F₃generation of the two crosses (Pol.x A-58 and Pol.x A-37), under both low plant density according to UNR-O honeycomb design and high plant density using a moving average, resulted in the selection of four groups with 20 selected F₃plants each. Within each group, equal numbers of seeds from each plant were mixed to establish four mixtures. These mixtures together with two controls ('Polycarpe' and 'Effe') were evaluated in a randomized complete block design (22 plants/m²) in one location for two years. It was found that the material selected continuously under low plant density had a significantly higher yield than the material selected under high plant density. In addition, the material selected from Pol.x A-37 (H₁R₂) under high plant density had a lower mean yield than that selected continuously under low plant density (H₁H₂). Their average yield over years was significantly higher than the yield of the material selected from Pol.x A-58 under both plant densities. Furthermore, the material selected from Pol.x A-58 under low plant density, had a significantly higher mean yield over years than its sibs selected under high plant density. It was concluded that honeycomb selection at low plant density can be used effectively for early generation selection in faba bean.     

Honeycomb selection for yield in early generations of spring wheat

Summary The effectiveness of the honeycomb selection method for yield in spring wheat (Triticum aestivum L.) was evaluated using progenies from two wheat crosses, Glenlea x NB131 and Glenlea x Era. Honeycomb selection was carried out in the F₂ and F₃ generations, grown at the University of Manitoba in the summers of 1980 and 1981, respectively. In both generations, divergent selection was made for both high and low yield. Plants selected in the F₃ generation were entered in an F₄ yield test in the summer of 1982. Results of the experiment showed that honeycomb selection for yield in the F₂ and F₃ generations was effective in identifying parents of high- and low-yielding lines. F₃ plants from highyielding F₂ selections gave higher yields than those from low-yielding F₂ selections by 11.5% and 13.0% for Glenlea x NB131 and Glenlea x Era crosses, respectively. The F₄ yield test showed that high yielding selections from both crosses significantly outyielded by 8.9% low yielding selections and by 14.4% the unselected composite lines. It is concluded that the honeycomb selection method can be used for early generation selection in spring wheat.     

Effects of competition and selection pressure on yield response in winter rye (Secale cereale L.)

Summary Three intensities of mass honeycomb selection (14.3,5.3 and 1.6%) applied to an unselected rye population gave respectively an annual yield response of 0.28, -3.69 and -5.20% at 15 cm spacing, and of 4.07, 5.39 and 8.99% at 90 cm spacing. The negative response with competition was explained by strong negative correlation between competing and yielding ability which causes positive skewness because of transposition of low yielders and strong competitors from the left to the right tail of the distribution. The positive response in the absence of competition was mainly due to the increased genotypic differentiation which allowed effective discrimination between high and low yielding genotypes. The efficiency of the selection in the absence of competition was further improved by using the honeycomb designs which adjust soil heterogeneity and application of very high family and individual selection pressures.Two cycles of mass honeycomb selection increased the population yield by 29.4%, one cycle of mass plus one cycle of pedigree honeycomb selection did so by 34.5%. The results are discussed in relation to the selection response and to the efficiency of various breeding schemes.Part of senior author's doctoral thesis     

Optimum allocation of test resources and relative efficiency of alternative procedures of within‐family selection in hybrid breeding

Selection within families can be conducted as family deviation (FDS) or strict within‐family selection (WFS). Our objectives were to (i) investigate two breeding schemes combining selection among families with FDS or WFS and (ii) compare the optimum allocation of test resources for these breeding schemes. We focused on selection among S₁ families and doubled haploid (DH) lines within S₁ families and used Monte Carlo simulations to determine the selection gain (Δ?), its standard deviation (SD_Δ?), and the average coefficient of coancestry among the selected DH lines (). For breeding schemes focusing only on within‐family selection, as employed in animal breeding, the maximum Δ?, its SD_Δ?, and were larger for FDS than for WFS. However, for breeding schemes combining among‐ and within‐family selection, as employed commonly in plant breeding programmes, the maximum Δ?, SD_Δ?, and were almost equal for FDS and WFS. Furthermore, the optimum allocation of test resources was similar for FDS and WFS. We conclude that FDS and WFS are equally suited for short‐ and long‐term success in breeding schemes where among‐family selection is followed by within‐family selection.     

An evaluation of a new rhombic grid selection,gridded mass selection and simple mass selection methods for yield improvement in wheat

Summary An experiment was conducted in Winnipeg, Manitoba, Canada to: (1) ascertain the efficiency of gridded mass selection; (2) to determine if additional selection efficiency can be achieved through refinement of the gridded mass selection procedure; and (3) to determine if the degree of homozygosity has an effect on response to single-plant selection. Three selection methods [simple mass selection (SMS); gridded mass selection (GMS); and a new rhombic grid selection (RGS)] were applied to four populations [a conventional F₂ (CON-F₂); an intermated F₂ (INT-F₂); and 2 partial backcrossed populations] developed from a biparental cross involving the Canadian spring wheat cultivars, Glenlea and Sinton. Averaged over the 4 populations, a single cycle of RGS (10% selection intensity) increased yield by about 9.5%, whereas GMS and SMS increased yield by approximately 4.5% and 3.1%, respectively. The degree of homozygosity of individual plants that make up the population appeared to have an effect on the efficiency of selection. In general, selection was more efficient in the two partial backcrossed populations, and least efficient in the CON-F₂ and INT-F₂ populations. The largest response to selection (15.9%) was attained when RGS was applied in the backcross to Glenlea population, and the lowest response (1.2%) when SMS was enforced in the CON-F₂ population. This paper represents the first report on the efficiency of rhombic grid selection for yield improvement in cereal crops.Contribution No. 550 of Agriculture Canada, Lacombe Research Station, Bag Service 5000, Lacombe, Alberta, Canada TOC ISO     

Prediction of indirect selection for seed and forage yield of lucerne based on evaluation under spaced planting

Phenotypic selection under spaced planting is frequently used in forage species. This study aimed to compare the predicted efficiency of direct selection for lucerne seed or forage yield under dense planting with indirect selection based on the same traits or seed yield components evaluated under spaced planting. Sixteen genotypes randomly chosen from a representative sample of locally adapted germplasm were grown for two years as individual clones spaced at 75 cm (density =1.78 plants/m²) and in dense plots formed by one row of four clones spaced at 10 cm (density = 50 plants/m²) using a randomized complete block design with three replications. Indirect selection based on seed yield under spaced planting was just 19% less efficient than direct selection, owing to moderate genetic correlation between plant densities (r_g = 0.66) and somewhat higher broad‐sense heritability under spaced planting than under dense planting. The relative efficiency of indirect selection for seed yield in density based on individual seed yield components under spaced planting ranged from modest to very low and was always below 45%. The efficiency of indirect selection for dry matter yield based on yield response under spaced planting was moderate for total yield (64%) and very low for second‐year yield (32%) relative to direct selection.     

Sample size required for marker assisted selection in improving quantitative traits of self-fertilizing species

The efficiency of selection for desired trait genotypes in a molecular marker assisted selection for a quantitative trait in self-fertilizing crop is considered. The QTLs controlling the trait were assumed to be unlinked. It was supposed that the selection starts in F₂, derived from a cross between inbred lines, and this selection will terminate if one or more plants with the desired trait genotype is found. If no plant with the desired trait genotype is found in F₂ then the selection is continued in the F₃ progeny that is derived from a single selected F₂ plant. Which F₂ plant is to be selected was determined according to the rank which is related to the marker genotype of the F₂ plants. And this rank was based on the expected frequency of the desired trait genotype in the progeny. The plant with the top rank among all F₂ plants is then selected with the first priority. Additionally the number of F₃ plants in the progeny was set to be equal to the number of plants that are required for detecting one or more plants with the desired trait genotype with a given probability. The probability of getting at least one plant with the desired trait genotype is expressed as a function of the number of F₂ plants (N).The required value for N and the total number of plants (T) in F₂ and F₃ for detecting at least one plant with the desired trait genotype were calculated for different situations. T was always smaller for a single marker than for flanking markers. The minimum of T and monotonous decrease of N can be observed when the cumulative-expected-frequency of selected marker genotypes of F₂ plants increased. This revised version was published online in July 2006 with corrections to the Cover Date.     

Effects of plot size and selection intensity on efficiency of selection in the first clonal generation of potato

To improve efficiency of selection in first year clones, investigations were carried out on the use of two-plant plots instead of one-plant ones. Extended plot size did reduce the environmental variance of characters connected with tuber yield, but had only a slightly positive effect on the selection result, as was concluded from a comparison between the first and the second clonal generation. Only lowering selection pressure in the first year clones seems to be a solution for optimizing selection efficiency, as could be concluded by comparing simulated selection percentages of about 5%, 20% and 50%.Owing to genotype × harvest time-interaction for the majority of traits important to either seed or ware potatoes, assessments at both harvest times are necessary for proper evaluation.     

A comparison between single plant plots and five plant plots for the initial selection stage of a potato breeding programme

Summary The efficiency of single plant selection in the initial selection stage of a potato breeding programme was examined. A random sample of potato clones was grown in single plant plots and also in tworeplicates of five plant plots. After harvest, each plot was visually assessed by three potato breeders; total tuber weight and number of tubers per plant were also recorded, from which mean tuber weight was calculated. The error variances of the single plant plots were found to be significantly greater than from the five plant plots for total tuber weight, mean tuber weight and number of tubers per plant, but not significantly different for breeders' preference. Coefficients of correlation between single and five plants plots were significantly greater than zero for all traits examined, but they were lower than the corresponding correlations between the two replicates of five plant plots. Although a random sample of clones was examined, each clone had been assessed for breeders' preference the previous year. When the clones were grouped according to the previous years preference scores, it was found that the correlation coefficients between single and five plant plots for breeders' preference were inversely related, in magnitude, to the mean preference score of each group. It was concluded that single plant selection was generally ineffective, particularly when only the better clones, from the previous years assessment, are examined.     

Evaluating the potential for farmer and plant breeder collaboration: A case study of farmer maize selection in Oaxaca, Mexico

Formal plant breeders could contribute much to collaboration with farmers for improving crop varieties for local use. To do so outside researchers must have some understanding of local selection practices and their impact on crop populations in terms of the genetic theory underlying plant breeding. In this research we integrated methods from social and biological sciences to better understand selection and its consequences from farmers' perspectives but based on the concepts used by plant breeders. Among the households we worked with, farmers' selection practices were not always effective yet they understood the reasons for this and had no expectations for response to selection in some traits given the methods available to them. Farmers' statements, practices and genetic perceptions regarding selection and the genetic response of their maize populations to their selection indicate selection objectives different than may be typically assumed, suggesting a role for plant breeder collaboration with farmers. This revised version was published online in July 2006 with corrections to the Cover Date.     

Comparison of pedigree selection and single seed descent for oil yield in linseed (Linum usitatissimum L.)

Summary Four populations of linseed derived from five parents were advanced from the F₂ to the F₆ generation by SSD and to the F₅ by pedigree selection. These populations were used to compare the efficiency of the two methods in order to provide superior genotypes with respect to grain yield and oil content, i.e. oil yield. The results showed minimum differences between pedigree and SSD lines for grain yield, where in only one cross the SSD lines were significantly superior to the pedigree lines. Since pedigree selection was carried out for both, seed yield and oil content, a positive response to selection was expected. However, early selection for yield, a character with low heritability, was not successful. On the contrary, significant differences for oil content were detected between the two groups of lines in three of the four crosses studied. In these cases the pedigree lines were superior to the SSD lines. These results demonstrate that strict selection in early generations for oil content, a character with comparatively high heritability, is feasible and successful in linseed. However, selection for seed yield should be postponed to later inbred generations. Consequently, in breeding for maximum oil yield of linseed a two-step selection procedure is recommended.Abbreviations PS pedigree selection - SSD single seed descent - TGW thousand grain weight     

The effect of low plant density on response to selection for biomass production in switchgrass

Switchgrass (Panicum virgatum L.) is a model bioenergy species with a high biomass production from which renewable sources of fuel and electricity can be generated. The objective of this study was to perform divergent single-plant selection for biomass yield at low plant density, intermate the selected plants in polycrosses, and evaluate the performance of their half-sib (HS) progenies in sward and row plots. One thousand plants from Alamo and Kanlow populations were planted in unreplicated honeycomb trials with a plant spacing of 120 cm. Moving-ring selection was applied to select 15 high- and 15 low-yielding plants from each population. These were grown in separate polycrosses to create HS-families. Four HS-families from high- and 4 from low-yielding parents of Alamo and Kanlow, along with their bulks were evaluated for 3 years in sward plots with row spacing of 18 cm. Five HS-families from high- and five from low-yielding parents of Alamo and Kanlow were evaluated for 2 years in row plots spaced 76 cm along with their bulks. Overall, the row-plots had 20% higher biomass per unit area than the sward-plots. Across populations and plant densities, the highest-yielding HS-families produced between 2.0 and 9.3 t/ha more biomass than the lowest-yielding HS-families. The mean biomass of the HS-families from parents selected for high-yield was between 0.34 and 4 t/ha higher than the mean of the HS-families from the low-yielding parents. The annual response to selection for the mean and the bulk of the HS-families from the high yielding parents was 19 and 27% higher than the check. These results indicate that on average, high- and low-yielding parental genotypes were effectively selected from the two populations under low plant density.