基于TaqMan实时荧光PCR的拟松材线虫分子鉴定技术

拟松材线虫与松材线虫的亲缘关系极为接近,是松材线虫病病原鉴定的主要干扰物种。为了排除松材线虫病病原鉴定过程中拟松材线虫的干扰,采用TaqMan实时荧光PCR技术,以核糖体DNA内转录间隔区(ITS)为模板设计拟松材线虫特异性引物和TaqMan探针,开展拟松材线虫分子检测和鉴定技术研究。结果表明:拟松材线虫ITS2区域存在较多的碱基差异,以此为模板设计的拟松材线虫引物和TaqMan探针组合具有较强的特异性;该组合灵敏性高,能够实现对拟松材线虫单条线虫甚至单个卵的分子检测和鉴定。结合现有的松材线虫分子鉴定技术,可以为进一步构建松材线虫双重检测技术体系奠定基础,为林业和海关检疫提供可靠的技术支撑。     

“松材线虫SCAR标记与系列分子检测技术及试剂盒研制”项目通过鉴定

2006年5月，由南京林业大学森林资源与环境学院叶建仁教授主持完成的“松材线虫SCAR标记与系列分子检测技术及试剂盒研制”通过了江苏省科技厅组织的科技成果鉴定。该项研究对松材线虫与拟松材线虫特异片段进行了系统筛选，共获得了7个松材线虫DNA特异片段与5个拟松材线虫DNA特异片段，为松材线虫与拟松材线虫的分子鉴定奠定了基础。首次将2个松材线虫与2个拟松材线虫的DNA特异片段成功转化为SCAR标记，丰富了松材线虫与拟松材线虫分子标记方法。首次采用SCAR标记方法成功构建了松材线虫检测试剂盒，PCR检测过程仅需2．2小时。首次成功标记了一个可用于检测松材线虫的非放射性探针DIG-F2／R1。用该探针对线虫基因组DNA点杂交，松材线虫均表现有较强的杂交信号，而拟松材线虫、霍夫曼尼伞滑刃线虫、大核滑刃线虫、长尾属线虫等均无杂交信号。     

松材线虫分子生物学检测技术研究进展

概述松材线虫分子生物学检测技术的基础，介绍了DNA探针技术、基于PCR的检测技术和卫星DNA技术等分子生物学检测方法，并对PCR-RAPD、PCR-RFLP和PCR-SSCP技术进行了比较。     

松材线虫cul-1基因的表达特性与功能

【目的】研究松材线虫Bxy-cul-1基因的表达特性和生物学功能,明确该基因在松材线虫生长发育中的作用,为从生长发育角度探索特异性的线虫种群增长控制措施提供理论基础。【方法】根据松材线虫基因组数据设计引物、克隆Bxy-cul-1基因,对Bxy-cul-1进行序列、系统发育和蛋白结构预测等生物信息学分析。利用实时荧光定量PCR技术和原位杂交技术探究Bxy-cul-1基因在松材线虫各龄期的表达水平和表达部位,明确其时空动态表达特性,采用RNA干扰技术探究该基因在松材线虫生长发育中的作用。【结果】生物信息学分析结果显示,Bxy-cul-1基因CDS全长2 292 bp,编码763个氨基酸,属于Cullin蛋白家族。原位杂交结果表明,Bxy-cul-1基因在松材线虫各发育阶段均有表达,胚胎期全胚胎表达,2龄期广泛表达,3龄期和4龄期主要在肠道、体壁肌肉和尾部表达;成虫期,Bxy-cul-1基因在雌虫的卵母细胞和阴户、雄虫的腹部、交合刺和尾部表达。实时荧光定量PCR结果显示,Bxy-cul-1基因在松材线虫2龄期表达量最高,胚胎期次之,3龄期、4龄期、成虫期表达量依次递减。对松材线虫胚胎干扰后发...     

松材线虫分子检测技术研究进展

由于松材线虫病引起松树的毁灭性危害,松材线虫的准确、快速鉴定工作被认为是松材线虫病防控的最重要的环节之一。针对松材线虫形态鉴定存在的不足,一系列松材线虫分子检测技术如限制性片段长度多态性、随机扩增多态性、特异引物PCR、实时定量PCR、核酸杂交检测等技术相继被开发利用。其中实时定量PCR检测技术与SCAR标记检测技术具有检测时间短、检测准确性高。该两项技术已广泛应用于我国生产实践中。     

一种适于PCR和LAMP检测的松木中松材线虫DNA快速提取方法

【目的】本研究旨在探索快速、简便地直接从病木中提取松材线虫 DNA 的方法。【方法】运用 Chelex-100结合异硫氰酸胍蛋白变性缓冲液建立新的高效快速提取微量木块中线虫 DNA 的方法,并通过普通 PCR 与环介导等温扩增( LAMP)对提取的 DNA进行检测验证。【结果】建立了提取线虫 DNA 的新方法 Chelex-100法,并对影响提取效率的Chelex-100浓度、冻融时间和煮沸时间进行了优化。Chelex-100法最适Chelex-100终浓度为1.5%( W/V),最适冻融时间为5 min,最适煮沸时间为8 min。与传统的 CTAB法和蛋白酶 K 法比较,Chelex-100法提取的 DNA得率高,相同条件下,该方法提取的 DNA浓度远远大于常规方法。3种方法的 OD260/280比值从大到小依次为CTAB法＞蛋白酶K法≥Chelex-100法,Chelex-100法的OD260/280值显著低于CTAB法,而略低于或等同于蛋白酶K法,但这并不影响对提取的 DNA 进行 PCR 扩增。采用 Chelex-100法提取松木中松材线虫的 DNA,结合常规的PCR和 LAMP检测,检测灵敏度高,特异性强,稳定性好;提取的松材线虫 DNA 的75倍稀释液再稀释32倍后进行PCR扩增,扩增产物电泳依然有清晰的条带。用新方法提取病木中线虫的 DNA 后进行检测,所有带病松木样品的检测结果均呈阳性,而健康黑松、马尾松、油松木屑及盘多毛孢样品的检测结果均呈阴性。此外,该提取方法简便快速,20 min内即可完成整个 DNA的提取;经济方便,试剂保藏无特殊要求,单个样品提取耗费低于3.5元。【结论】Chelex-100法是一种快速有效的提取松木中松材线虫DNA的方法,此方法结合PCR和LAMP检测技术将进一步提高松材线虫的检测效率、灵敏度和准确性,可为松材线虫的野外检测提供可靠的技术依据。     

松墨天牛携带的松材线虫PCR检测技术

利用本研究筛选出的一对松材线虫特异性PCR引物(上游引物:5'-CTACGTGCTGTTGTTGAGTTGGC-3',下游引物:5'-TGGTGCCTAACATTGCGCGA-3'),从松材线虫DNA中,扩增出一条长度403 bp(基因库登陆号:DQ855275)的特异性DNA片段.该引物可以将松材线虫DNA与松墨天牛组织以及拟松材线虫、畸刺伞滑刃线虫、变异伞滑刃线虫、小角伞滑刃线虫、利昂伞滑刃线虫、湖南伞滑刃线虫、红松滑刃线虫、滑刃属线虫、斯坦纳长尾线虫、小茎线虫、剑尾齿杆双胃线虫和寄生小杆属线虫等12种线虫的DNA区分开来.在此基础上,建立一套利用PCR技术直接从受感染的松墨天牛组织中检测出松材线虫的技术,并在实际运用中得到检验.     

落叶松自然条件下感染松材线虫初报

对2018年辽宁抚顺市出现枯死现象的长白落叶松Larix olgensis、日本落叶松L.kaempferi和华北落叶松L.principis-rupprechtii取样调查,通过显微镜形态学鉴定和实时荧光定量PCR方法确定3种落叶松体内均含松材线虫Bursaphelenchus xylophilus。由此确定松材线虫在我国自然条件下侵染落叶松。这是我国关于落叶松自然感染松材线虫的首次报道。     

松材线虫实时PCR检测方法的建立

对南京林业大学开发的松材线虫实时PCR检测方法的操作过程进行了规范化.介绍了检测松材线虫所需要的试剂及使用方法,对仪器的稳定性进行了验证,对检测结果的判读方法进行了规定.规范化的检测方法灵敏度高,特异性强,应用方便.     

松材线虫病双基因检测方法的建立

采用松材线虫的核糖体DNA的内转录区序列及cathepsin L-like cysteine proteinase为目的片段设计2对引物,建立了可特异性检测松材线虫的双基因PCR检测法.利用这2对引物,松材线虫可扩增出大小分别为490 bp及264 bp的产物,而其他对照组均无扩增.此检测方法经过实际应用检验,灵敏度与...     

Browsing Damage on Pine (Pinus sylvestris and P. contorta) by a migrating moose (Alces alces) Population in Winter: Relation to Habitat Composition and Road Barriers

In Scandinavia, moose (Alces alces L.) sometimes cause severe browsing damage to economically-important pine. Moose-vehicle accidents have spurred construction of fences along roads, and these may interfere with moose migration between summer and winter ranges, or the road alone may be a barrier. If this happens and moose build up along roads, landowners may suffer economically. Therefore, this study investigated whether roads, fences or other factors influence the use of young pine stands by moose. Eighty stands along roads in northern Sweden were evaluated in which individually-browsed branches were counted on 9972 pines. Moose browsing was not significantly related to birch (Betula pendula Roth, B. pubescens Ehrh.) density, nor did it differ between pines (Pinus contorta Douglas or P. sylvestris L.). However, increased pine density, site productivity and proximity to a highway were associated with increased browsing. Further large-scale studies are needed to understand moose habitat selection and the effects of roads.     

Effects of Root Freezing on the Physiology and Growth of Picea glauca,Picea mariana and Pinus banksiana Seedlings Under Different Soil Moisture Regimes

The root systems of 2-yr-old Picea glauca, Picea mariana and Pinus banksiana seedlings were submitted to various frost temperatures during an artificial frost to induce different levels of root damage. Frost-damaged and control seedlings were placed in a greenhouse under high and low soil moisture regimes. Seedling growth and physiology were evaluated periodically. Seedling survival was reduced when root damage reached levels of 60-80%. Root systems of all three species showed partial to total recovery by the end of the experiment. In general, root freezing damage caused reductions in seedling growth, with these reductions becoming less significant over time. Root damage had little to no effect on black spruce and jack pine seedling physiology, while white spruce CO 2 uptake decreased with increasing root damage. Shoot nitrogen content of all three species decreased slightly with increasing root damage.     

Stand Structure in Pine,Spruce and Deciduous Forests: A Comparison Between Finnish and Russian Karelia

This study investigated the stand structure in pine, spruce and deciduous forests in the border district of Finland and Russia. A total of 46 mature forest stands was selected as pairs, the members of each pair being as similar as possible with respect to their forest site type, age, moisture and topography. The stands were then compared between the two countries by means of basal areas and number of stems. The proportions of dominating tree species were 2-12% lower, and correspondingly the proportions of secondary tree species higher, in Russian forests. The density of the forest stock was also higher in each forest type in Russia. The forests in the two countries differed most radically in terms of the abundance of dead trees. The amount was two to four times higher in Russian deciduous and spruce forests, and in pine forests the difference was 10-fold. The stand structures indicated that Russian coniferous stands, in particular, were more heterogeneous than intensively managed pine and spruce stands in Finland.     

Growth and Terminal Bud Formation in Picea abies Seedlings Grown with Alternating Diurnal Temperature and Different Light Qualities

The root collar diameter and the height:diameter ratio are of particular importance in container-grown seedlings where a high density in the containers may produce spindly seedlings. Temperature regimes and light quality are known to affect plant growth. The aim of this study was to identify responses in Picea abies (L.) Karst. seedlings grown with light providing different red:far-red ratios and under temperature regimes with alternating day (DT) and night temperature (NT) from negative (DT < NT) to positive (DT > NT) difference (DIF) between DT and NT. Experiments were conducted in controlled environment chambers and in a daylight phytotron. Only limited thermoperiodic responses appeared in P . abies seedlings with respect to seedling height and dry weight accumulation. The formation of terminal buds, however, was clearly delayed in seedlings grown at negative DIF. The results indicate a requirement for day extension light that is high in far-red, to prevent terminal bud formation under natural short-day conditions. An extended study should be conducted to clarify the minimum level of light intensity and the optimal light quality needed to prevent terminal bud formation under natural short-day conditions.     

CAD与建筑设计的关系

本文分析了CAD在设计中引起的正面和负面影响,并进行了系统的阐述,从而使设计者在应用中能够保持客观的态度。     

Natural Regeneration in Clear-cuts: Effects of Scarification,Slash Removal and Clear-cut Age

The effects of soil scarification (mounding), slash removal and clear-cut age on the natural regeneration in clear-cuts was evaluated using data from four sites in southern Sweden. The treatments were carried out during a good seed and establishment year for birch ( Betula pubescens Ehrh. and B. pendula Roth). Scarification had the strongest positive effect on the density of naturally regenerated seedlings, especially in birch, but also in pine ( Pinus sylvestris L.) and spruce [ Picea abies (L.) Karst]. Slash removal had a positive effect on birch density. No statistically significant effect of clear-cut age was found. In addition, no statistically significant interactions between clear-cut age and scarification or slash removal were found. The ingrowth of field vegetation was the fastest in areas that were not scarified, less rapid in areas scarified on old clear-cuts, and the slowest after scarification in fresh clear-cuts. In conclusion, it may be possible to control the density of birch during a good establishment year for birch. If birch is desired, the best combination of treatments is to remove the slash and scarify; otherwise, these treatments should be avoided.     

Risk Perception Among Non-industrial Private Forest Owners

Based on an enquiry, risk perception among non-industrial private forest owners is described in relation to climate change and forestry hazards. Of the respondents, 11% took action to remedy the effects of climate change. Out of a given set, hazards were ranked according to each respondent's experience of recent substantial financial loss to the estate and in relation to his or her willingness to make investments aimed at risk reduction. For each hazard, the respondent assessed the risk in four classes ranging from very high to negligible risk. Six hazards were considered most problematic in all three aspects: browsing damage, falling timber prices, damage by wind, spruce bark beetle, root rot and pine weevil. A majority of the respondents claimed to take action to reduce the risk associated with at least one hazard, while 35% did not know whether they did. Excluding climate change, the need for decision support was the largest in relation to damage by wind owing to a combination of perceived high risk and a high level of ignorance in relation to whether risk-reducing measures were taken.     

Interactions in decomposition and N mineralization between tropical legume residue components

In situ produced plant residues contain a mixture of different plant components of varying quality. To assess synergistic or antagonistic interactions occurring during the decomposition and mineralization of such mixtures, individual plant parts (stems, leaves, leaf litter and roots) or the mixture of stems, leaves and leaf litter of the agroforestry species pigeonpea (Cajanus cajan) or of crop residues of peanut (Arachis hypogaea) or of the weed hairy indigo (Indigofera hirsuta) were incubated in pots for 19 weeks. Periodically, remaining plant residues were sieved out (>2 mm), weighed and N content as well as soil mineral N determined. Above- and below-ground residues of peanut decomposed fastest and showed the largest N release in agreement with their high N concentration and low-acid detergent fibre (ADF) : N ratio. Hairy indigo was hypothesized to be of lower quality than pigeonpea because of its high-polyphenol content. However, it decomposed faster than pigeonpea, largely because of the higher N and lower lignin concentration of its components. Ranking of individual plant components for N mineralization resulted in the following pattern, leaves > leaf litter > roots > stems. In mixtures of the different plant components a similar species order in decomposition was obtained, e.g. peanut > hairy indigo > pigeonpea. The amount of N released from the mixture was dominated by stem material that comprised 46–61% of the mixture. The interactions in mixtures were relatively small for peanut (generally high-quality components) as well as for pigeonpea (low proportion of high-quality components, i.e. N rich leaf material). However, a positive interaction occurred during later stages of N mineralization in the mixture of hairy indigo as it had a significant proportion of N rich components and absence of highly reactive polyphenols. Thus, for plants with low to intermediate chemical quality attributes, manipulating plant composition (e.g. by varying harvest age, affecting stem and leaf proportions) will be important to obtain significant interactions during decomposition when its components are mixed.     

Pasture production and tree growth in a young pine plantation fertilized with inorganic fertilizers and milk sewage in northwestern Spain

The use of organic waste materials such as milk sewage as an organic fertilizer could have the dual advantages of organic-waste disposal and reduced dependence on inorganic fertilizers. The effects of fertilization with (1) conventional mineral fertilization, (2) milk sewage sludge at 40 kg N ha⁻¹ target rate and (3) no fertilization on pasture production and tree growth were examined in an experiment consisting of two pasture mixtures under a one-year-old Pinus radiata plantation with a density of 2500 trees ha⁻¹. The two pasture mixtures were: (1) Dactylis glomerata L. var. saborto (25 kg ha⁻¹) + Trifolium repens L. group Ladino (4 kg ha⁻¹) + Trifolium pratense L. var. Marino (1 kg ha⁻¹); (2) Lolium perenne L. var. Tove (25 kg ha⁻¹) + Trifolium repens L. group Ladino (4 kg ha⁻¹) + Trifolium pratense L. var. Marino (1 kg ha⁻¹). The experiment began in the spring of 1995 using a randomized block design with three replicates in Castro Riberas de Lea (Lugo, Galicia, north-western Spain). Plot size was 12 × 8 m², with a 1 m buffer strip between plots. Two-year data showed that fertilization with either material had a positive effect on pasture production, with no significant difference between the two fertilization treatments. Tree growth in the milk sewage sludge plot was significantly higher than in the control plots. Inorganic fertilization increased pasture production, but affected tree growth negatively. The results show that milk sewage sludge could be used as a fertilizer in silvo-pastoral systems. This revised version was published online in June 2006 with corrections to the Cover Date.