Geologic Evolution of North America: Geologic features suggest that the continent has grown and differentiated through geologic time

The oldest decipherable rock complexes within continents (more than 2.5 billion years old) are largely basaltic volcanics and graywacke. Recent and modern analogs are the island arcs formed along and adjacent to the unstable interface of continental and oceanic crusts. The major interfacial reactions (orogenies) incorporate pre-existing sial, oceanic crust, and mantle into crust of a more continental type. Incipient stages of continental evolution, more than 3 billion years ago, remain obscure. They may involve either a cataclysmic granite-forming event or a succession of volcanic-sedimentary and granite-forming cycles. Intermediate and recent stages of continental evolution, as indicated by data for North America, involve accretion of numerous crustal interfaces with fragments of adjacent continental crust and their partial melting, reinjection, elevation, unroofing, and stabilization. Areas of relict provinces defined by ages of granites suggest that continental growth is approximately linear. But the advanced differentiation found in many provinces and the known overlaps permit wide deviation from linearity in the direction of a more explosive early or intermediate growth.     

Rooting the eukaryote tree by using a derived gene fusion

Single-gene trees have failed to locate the root of the eukaryote tree because of systematic biases in sequence evolution. Structural genetic data should yield more reliable insights into deep phylogenetic relationships. We searched major protist groups for the presence or absence of a gene fusion in order to locate the root of the eukaryote tree. In striking contrast to previous molecular studies, we show that all eukaryote groups ancestrally with two cilia (bikonts) are evolutionarily derived. The root lies between bikonts and opisthokonts (animals, Fungi, Choanozoa). Amoebozoa either diverged even earlier or are sister of bikonts or (less likely) opisthokonts.     

Synteny and collinearity in plant genomes

Correlated gene arrangements among taxa provide a valuable framework for inference of shared ancestry of genes and for the utilization of findings from model organisms to study less-well-understood systems. In angiosperms, comparisons of gene arrangements are complicated by recurring polyploidy and extensive genome rearrangement. New genome sequences and improved analytical approaches are clarifying angiosperm evolution and revealing patterns of differential gene loss after genome duplication and differential gene retention associated with evolution of some morphological complexity. Because of variability in DNA substitution rates among taxa and genes, deviation from collinearity might be a more reliable phylogenetic character.     

Perspectives on artificial intelligence programming

Programs are judged not only by whether they faithfully carry out the intended processing but also by whether they are understandable and easily changed. Programming systems for artificial intelligence applications use specialized languages, environments, and knowledge-based tools to reduce the complexity of the programming task. Language styles based on procedures, objects, logic, rules, and constraints reflect different models for organizing programs and facilitate program evolution and understandability. To make programming easier, multiple styles can be integrated as sublanguages in a programming environment. Programming environments provide tools that analyze programs and create informative displays of their structure. Programs can be modified by direct interaction with these displays. These tools and languages are helping computer scientists to regain a sense of control over systems that have become increasingly complex.     

Homoplasy: from detecting pattern to determining process and mechanism of evolution

Understanding the diversification of phenotypes through time--"descent with modification"--has been the focus of evolutionary biology for 150 years. If, contrary to expectations, similarity evolves in unrelated taxa, researchers are guided to uncover the genetic and developmental mechanisms responsible. Similar phenotypes may be retained from common ancestry (homology), but a phylogenetic context may instead reveal that they are independently derived, due to convergence or parallel evolution, or less likely, that they experienced reversal. Such examples of homoplasy present opportunities to discover the foundations of morphological traits. A common underlying mechanism may exist, and components may have been redeployed in a way that produces the "same" phenotype. New, robust phylogenetic hypotheses and molecular, genomic, and developmental techniques enable integrated exploration of the mechanisms by which similarity arises.     

Polyploidy and the evolution of gender dimorphism in plants

Gender dimorphism and polyploidy are important evolutionary transitions that have evolved repeatedly in many plant families. We show that gender dimorphism in North American Lycium (Solanaceae) has evolved in polyploid, self-compatible taxa whose closest relatives are cosexual, self-incompatible diploids. This has occurred independently in South African Lycium. We present additional evidence for this pathway to gender dimorphism from 12 genera involving at least 20 independent evolutionary events. We propose that polyploidy is a trigger of unrecognized importance for the evolution of gender dimorphism, which operates by disrupting self-incompatibility and leading to inbreeding depression. Subsequently, male sterile mutants invade and increase because they are unable to inbreed.     

乡村振兴视角下产业兴旺与生活富裕的耦合协调性研究

以乡村振兴为视角,利用耦合度模型、剪刀差、演化耦合度模型,对2005—2019年甘肃省产业兴旺子系统和生活富裕子系统的耦合关系进行了分析,研究结果显示:两子系统的耦合协调度在研究期内总体呈上升趋势,分别经历了失调衰退、中间过渡、协调提升三个阶段。由于产业兴旺子系统的演化速度持续下降,而生活富裕子系统的演化速度持续上升,导致二者的剪刀差α呈“V”型变化趋势,系统的演化耦合度β呈下降趋势,系统演化耦合度由共同发展状态变为初级协调发展状态。特别是2010年以后,产业兴旺子系统的演化速度小于生活富裕子系统的演化速度,这对长期维持的初级协调发展状态极为不利。因此,在甘肃省实施乡村振兴战略的首要任务就是要振兴乡村产业,激活乡村内生动力。     

Evolution in the social brain

The evolution of unusually large brains in some groups of animals, notably primates, has long been a puzzle. Although early explanations tended to emphasize the brain's role in sensory or technical competence (foraging skills, innovations, and way-finding), the balance of evidence now clearly favors the suggestion that it was the computational demands of living in large, complex societies that selected for large brains. However, recent analyses suggest that it may have been the particular demands of the more intense forms of pairbonding that was the critical factor that triggered this evolutionary development. This may explain why primate sociality seems to be so different from that found in most other birds and mammals: Primate sociality is based on bonded relationships of a kind that are found only in pairbonds in other taxa.     

Mechanism of the rhodium porphyrin-catalyzed cyclopropanation of alkenes

The rhodium porphyrin-catalyzed cyclopropanation of alkenes by ethyl diazoacetate (EDA) is representative of a number of metal-mediated cyclopropanation reactions used widely in organic synthesis. The active intermediate in these reactions is thought to be a metal carbene complex, but evidence for the involvement of metal-olefin pi complexes has also been presented. Low-temperature infrared and nuclear magnetic resonance spectroscopies have been used to characterize a rhodium porphyrin-diazoalkyl adduct that results from the stoichiometric condensation of the catalyst and EDA. Optical spectroscopy suggests that this complex is the dominant steady-state species in the catalytic reaction. This compound decomposes thermally to provide cyclopropanes in the presence of styrene, suggesting that the carbene is indeed the active intermediate. Metal-alkene pi complexes have also been detected spectroscopically. Kinetic studies suggest that they mediate the rate of carbene formation from the diazoalkyl complex but are not attacked directly by EDA.     

Abundance distributions imply elevated complexity of post-Paleozoic marine ecosystems

Likelihood analyses of 1176 fossil assemblages of marine organisms from Phanerozoic (i.e., Cambrian to Recent) assemblages indicate a shift in typical relative-abundance distributions after the Paleozoic. Ecological theory associated with these abundance distributions implies that complex ecosystems are far more common among Meso-Cenozoic assemblages than among the Paleozoic assemblages that preceded them. This transition coincides not with any major change in the way fossils are preserved or collected but with a shift from communities dominated by sessile epifaunal suspension feeders to communities with elevated diversities of mobile and infaunal taxa. This suggests that the end-Permian extinction permanently altered prevailing marine ecosystem structure and precipitated high levels of ecological complexity and alpha diversity in the Meso-Cenozoic.     

A Cambrian peak in morphological variation within trilobite species

Morphological variation within species is a raw material subject to natural selection. However, temporal change in morphological diversity has usually been studied in terms of variation among rather than within species. The distribution of polymorphic traits in cladistic character-taxon matrices reveals that the frequency and extent of morphological variation in 982 trilobite species are greatest early in the evolution of the group: Stratigraphically old and/or phylogenetically basal taxa are significantly more variable than younger and/or more derived taxa. Through its influence on evolutionary tempo, high intraspecific variation may have played a major role in the pronounced Cambrian diversification of trilobites.     

Reverse engineering of biological complexity

Advanced technologies and biology have extremely different physical implementations, but they are far more alike in systems-level organization than is widely appreciated. Convergent evolution in both domains produces modular architectures that are composed of elaborate hierarchies of protocols and layers of feedback regulation, are driven by demand for robustness to uncertain environments, and use often imprecise components. This complexity may be largely hidden in idealized laboratory settings and in normal operation, becoming conspicuous only when contributing to rare cascading failures. These puzzling and paradoxical features are neither accidental nor artificial, but derive from a deep and necessary interplay between complexity and robustness, modularity, feedback, and fragility. This review describes insights from engineering theory and practice that can shed some light on biological complexity.     

螟黄足盘绒茧蜂复合群系统发育分析(膜翅目:茧蜂科:小腹茧蜂亚科)

对螟黄足盘绒茧蜂复合群Cotesia flavipes complex(膜翅目：茧蜂科：小腹茧蜂亚科)分布全世界的5个种和外群螟蛉盘绒茧蜂Cruficrus,粘虫盘绒茧蜂Ckariyai,粉蝶盘绒茧蜂eglomerata的24个性状进行比较研究,并运用支序分析的方法探讨螟黄足盘绒茧蜂复合群5个种种间系统发育关系．支序分析表明,螟黄足盘绒茧蜂复合群是一单系群,芦螟盘绒茧蜂C．chiloluteelli和汉寿盘绒茧蜂C．hanshouensis亲缘关系靠近,共有同一节点,二者与大螟盘绒茧蜂C．sesamiae构成姐妹群,此姐妹群再与二化螟盘绒茧蜂C．chilonis共有同一最近共同祖先,最后与螟黄足盘绒茧蜂C．tlavipes构成螟黄足盘绒茧蜂复合群单系群．     

国审小麦品种“小偃22”两个姊妹系的差异分析

国审小麦新品种小偃22有两个姊妹系小偃22-2和小偃22-3,两个系在农艺性状多方面比较相似,皆具有多穗多粒、结实性突出、品质优良、增产潜力大、抗逆性强、适应性广等突出优点,是陕西省第六次更新换代骨干品种。为了有效鉴别和利用这2个姊妹系,本文从农艺性状、蛋白电泳、SSR等方面系统分析了两个系的差异,总结了两者农艺性状的异同点,找到了区分2个姊妹系SDS-PAGE和A-PAGE图谱的特征带,筛选出了25对区分这2个姊妹系分子差异的SSR特异引物。     

The centromeric protein Sgo1 is required to sense lack of tension on mitotic chromosomes

Chromosome alignment on the mitotic spindle is monitored by the spindle checkpoint. We identify Sgo1, a protein involved in meiotic chromosome cohesion, as a spindle checkpoint component. Budding yeast cells with mutations in SGO1 respond normally to microtubule depolymerization but not to lack of tension at the kinetochore, and they have difficulty attaching sister chromatids to opposite poles of the spindle. Sgo1 is thus required for sensing tension between sister chromatids during mitosis, and its degradation when they separate may prevent cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension.     

Pleistocene changes in the fauna and flora of South america

In recent years, the view that Pleistocene climatic events played a major role in the evolution of the biotas of southern, primarily tropical continents has begun to displace the previously held conviction that these areas remained relatively stable during the Quaternary. Studies of speciation patterns of high Andean plant and avian taxa (7-14) have led to the conclusion that Pleistocene climatic events were the factors that ultimately shaped the patterns now observed in the paramo-puna and the related Patagonian flora and fauna. The final uplift of the Andes at the end of the Tertiary automatically limits the age of the high Andean habitats and their biotas to the Quaternary. Within this period, the number of ecological fluctuations caused by the glaciations could easily have provided the mechanism behind the patterns now present in these habitats (Appendix, 1; Figs. 1 and 2; Table 1). In glacial periods, when vegetation belts, were lowered, organisms in the paramo-puna habitat were allowed to expand their ranges. In interglacial periods, these taxa were isolated on disjunct peaks, where differentiation could occur. At times of ice expansion, glacial tongues and lakes provided local barriers to gene exchange, whereas in warm, interglacial times, dry river valleys were a major deterrent to the interbreeding of populations on different mountains (Fig. 2; Table 2). A preliminary analysis of about 10 to 12 percent of the total South American avifauna (14), subsequent to the study of the high Andean biota, suggested that the birds of all the major habitats of the continent possess, with about equal frequency, similar stages of speciation. This correspondence in levels of evolution indicated that the avifauna of vegetation zones which were thought to have been more stable (for example, tropical rainforests) are as actively speciating as are those of the more recent paramo-puna habitats. More intensive work on lowland tropical taxa (16, 19-21) and recent work on montane forest elements (40) now justify the conclusion that the floras and faunas of these areas were also greatly affected by Pleistocene climatic shifts. In the broad region of South America that lies within the tropics, a series of humid-arid cycles (Appendix, 6, 8-10) drastically and repeatedly altered vegetation patterns during the Quaternary. Both montane and lowland rainforests were fragmented during dry periods and were able to reexpand during humid phases. Speciation of forest elements was initiated-and sometimes completed-in isolated patches of the fragmented forest. Secondary contact, with hybridization or reunition of populations that did not become reproductively isolated, occurred in periods of reexpansion. These biological data, combined with supportive geological evidence (Appendix, 1-11), show that climatic events during the last million or so years have affected the biota of South America as much as the Pleistocene glacial changes affected the biotas of Eurasia and North America. Since most of South America lies within tropical latitudes, it is suggested here that part of the diversity of species in the tropical areas of this continent is due to two historical factors: the lack of wholesale elimination of species (compared with northern and high latitudes), and ample opportunity for speciation in successive periods of ecological isolation. The apparent paradox of the wealth of species in the "stable tropics" is partially explained by the fact that the tropics have probably been quite unstable, from the point of view of their biotas, during the Pleistocene and perhaps part of the Tertiary.     

Specialized face learning is associated with individual recognition in paper wasps

We demonstrate that the evolution of facial recognition in wasps is associated with specialized face-learning abilities. Polistes fuscatus can differentiate among normal wasp face images more rapidly and accurately than nonface images or manipulated faces. A close relative lacking facial recognition, Polistes metricus, however, lacks specialized face learning. Similar specializations for face learning are found in primates and other mammals, although P. fuscatus represents an independent evolution of specialization. Convergence toward face specialization in distant taxa as well as divergence among closely related taxa with different recognition behavior suggests that specialized cognition is surprisingly labile and may be adaptively shaped by species-specific selective pressures such as face recognition.     

Cold-seep mollusks are older than the general marine mollusk fauna

The origin and possible antiquity of faunas at deep-sea hydrothermal vents and seeps have been debated since their discovery. We used the fossil record of seep mollusks to show that the living seep genera have significantly longer geologic ranges than the marine mollusks in general, but have ranges similar to those of deep-sea taxa, suggesting that seep faunas may be shaped by the factors that drive the evolution of life in the deep sea in general. Our data indicate that deep-sea anoxic/dysoxic events did not affect seep faunas, casting doubt on the suggested anoxic nature and/or global extent of these events.     

Finite social space, evolutionary pathways, and reconstructing hominid behavior

Changes in social behavior were a key aspect of human evolution, and yet it is notoriously difficult for paleobiologists to determine patterns of social evolution. By defining the limited number of distributional strategies available to members of each sex of any species and investigating the conditions under which they may occur and change, the social behavior of different hominid taxa may be reconstructed.