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Charles R. Warren 《Soil biology & biochemistry》2008,40(4):916-923
A growing body of research is arguing that amino acids are key components of the soil nitrogen cycle. For example, we now know that many plants can take up intact amino acids, even in competition with soil microbes. Our growing recognition of the importance of amino acids is not matched by knowledge of the amounts and type of amino acids in the soil, certainly not in comparison with our encyclopaedic knowledge of inorganic N. The primary reason that less is known about amino acids than inorganic N is that measuring the amounts of individual amino acids with conventional chromatographic techniques is slow and typically requires extensive sample clean-up if KCl extracts are analysed. The aim of this study was to develop capillary electrophoresis with laser-induced fluorescence detection (CE-LIF) as a more rapid alternative for measuring individual amino acids in KCl extracts of soil. The CE-LIF method separated 17 common amino acids within 12 min, with detection limits between 7 and 250 nM. One molar KCl extracts could be analysed without any sample clean-up or de-salting, and spike and recovery tests indicated that the complex matrix of soil extracts did not affect quantification. Further evidence of the suitability and robustness of the method came from the repeated analysis (n=5) of the same soil KCl extract. The relative standard deviation of migration times for replicate analyses were <0.2% while relative standard deviations for peak areas were <5%. To demonstrate application of the CE-LIF method to real world problems it was used to analyse amino acids in 1 M KCl extracts from a sub-alpine grassland and a Eucalyptus regnans forest. The most abundant amino acids were Ala, Gly and Arg. Other amino acids present at smaller concentrations or in a minority of samples were Asn, Cit, GABA, Glu, His, Phe, Leu, and Lys. The proposed CE-LIF method offers significant advantages over chromatographic methods via its rapidity, reproducibility and, most importantly, its ability to analyse crude KCl extracts. 相似文献
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Aminostratigraphy has proved to be a useful approach for dating fossils from the Quaternary. In these studies the amino acids in Quaternary soil formations were determined in an attempt to establish their stratigraphical relationships and relative ages. The sampling sites are in the southwest of Poland, in the Trzebnickie Hills. Three samples of fossil soils and two of recent soils were analysed. The absolute age of the soil samples was estimated by radiocarbon dating. We found that the total amount of amino acids decreased with the increasing age of soil. The smallest amounts of amino acids were found in the oldest fossil soil of Denekamp (Vistulian) age dated 29 600 ± 760 years bp . A sample of recent loess soil contained the most total amino acids, whereas the fossil soil of Lower Atlantic age, dated 3540 ± 230 years bp , was intermediate in respect of the total amount of amino acids, oxidation state and degree of biochemical transformation. Neutral amino acids formed a majority of all the amino acids studied. The method we describe could be useful in relative chronostratigraphical identification of fossil soils. 相似文献
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It is now widely accepted that many plants and mycorrhizal fungi have the ability to take up organic nitrogen (N) in the form of amino acids, although the importance of this uptake in the field is less clear. In the laboratory it has been shown that uptake affinity and uptake kinetics of ammonium and some amino acids are comparable. The relative uptake of either N form from the soil solution would thus be related to the relative concentration in the soil solution accessed by roots. We sampled soil solution from the F- and H-layers under a Spruce stand in a fertilisation experiment in Flakaliden, northern Sweden. Tension lysimeters were installed in plots receiving irrigation (I) or irrigation plus liquid fertilisation (IL). The soil solution samples were analysed for ammonium, nitrate, free amino acids, hydrolysable amino acids, total organic N and total organic C. In I plots the concentrations of both ammonium and free amino acids were very low with no obvious dominance of either form. In IL plots inorganic N concentrations were higher and amino acid concentrations were lower compared to I plots, and thus the inorganic N dominated over amino acids. There was no difference in H-layer ammonium concentration between I and IL plots despite the high N addition rate on the soil surface during nights of sampling. The lower amino acid concentrations in IL plots might be an effect of a decreased proteolytic activity due to the documented shift in mycorrhizal fungi species composition at the site. 相似文献
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《Geoderma》2006,130(1-2):77-96
Base- and acid-hydrolysable fractions of humic acids (HAs) isolated from a forest soil, an agricultural soil and a lignite deposit were analysed, and comparisons were made between the base hydrolysable lipid (bound lipid), carbohydrate and amino acid signatures of the different humic acids.Bound lipids differ depending on the humic acid origin. Their composition were rather similar for the two soil humic acids, with three main lipid classes identified: (i) aliphatic components, (ii) aromatic components and (iii) sterols and triterpenols. The aliphatic subfraction was the most abundant and consisted predominantly of cutin- and suberin-derived moieties some of which could be clearly related to the vegetation. A minor bacterial input was indicated by the presence of short chain α- and β-hydroxyalkanoic acids. Aromatic subfraction contributed to a low amount to the total base hydrolysates and consisted mainly of lignin-derived methoxyphenols. Present in trace amounts, sterols and triterpenols are mainly of higher plant origin. The base hydrolysate from lignite humic acid markedly differs. Bound lipids released from lignite HA comprised almost exclusively aliphatic components, largely dominated by long chain alkanoic acids. Lignin-derived moieties, hardly detected, consisted solely of vanillic and 4-hydroxybenzoic acids indicating a much higher degree of lignin alteration in lignite humic acid. Sterols and triterpenols were absent.Although the composition of monosaccharides released upon acid hydrolysis was rather uniform irrespective of the humic acid origin, the distribution changed with the degree of humification of the HAs. Ratios of (Galactose+Mannose) to (Xylose+Arabinose) increased from soil to lignite humic acids. The high values of the ratios indicate that carbohydrates are primarily of microbial origin.In all humic acids neutral and acidic protein amino acids dominated. Non protein amino acids were only minor components consisting mainly of hydroxy proline and ornithine. The amino acid distributions of both soil HAs were similar. The amino acid distribution of lignite HA resembled that of soil HAs except for the following differences: (1) the absence of hydroxy proline and the greater abundance of ornithine suggesting a higher microbial contribution to the amino acids as the degree of humification increases, (2) the higher contribution of polar amino acids suggesting a preferential preservation of these amino acids possibly by interaction with the humic acid surface through hydrogen bonds. 相似文献
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Newly synthesized amino acids are the principle compounds created after inorganic nitrogen (N) is rapidly immobilized into microbial tissues. However, little is known about the mineralization kinetics of these newly synthesized amino acids compared to the amino acids originally present in the soil, and how substrate availability controls their mineralization. With 15N isotope tracing, the newly synthesized (15N-labeled) amino acids can be differentiated from the amino acids originally present (unlabeled) in soil, making it possible to evaluate the mineralization of the newly synthesized amino acids in tandem with the original amino acids. As amino acids can serve as both N and carbon (C) sources for microorganisms, the mineralization dynamics of amino acids may be manipulated by the availability of extraneous C and N. In this study, an aerobic 30-week intermittent leaching experiment was conducted, using glucose as C source and (14NH4)2SO4 as N source, following separate additions to soil. The newly synthesized amino acids were determined by an isotope-based high performance liquid chromatography/mass spectrometry (HPLC/MS). The newly synthesized soil amino acids mineralized faster than the original ones, which indicated more rapid cycling of N in the newly synthesized soil amino acids pool. Glucose addition significantly decreased the mineralization of both the newly synthesized and the original amino acids. However, when inorganic N was abundant, the newly synthesized amino acids decomposed rapidly, and preferentially as a C source and energy, while N addition inhibited the mineralization of the original amino acids in the soil. We conclude that the presence of readily degradable C (e.g. glucose) and inorganic N controls the mineralization of newly synthesized and original amino acid pools in soil differently, which is a crucial mechanism in adjusting the N supply and sequestration processes in soil ecosystems. 相似文献
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Substantial amounts of low molecular weight organic compounds (LMWs) such as sugars and amino acids are transferred from plant roots into soil. These substances are released due to decomposition processes or leaching (exudation). Afterwards they can be metabolized by soil microorganisms into different compounds, or they can be partially re‐absorbed by the plants. The aim of this study was to clarify the influence of five wild plant species on the composition and pool sizes of LMWs extractable from three different soils. Four of the five species caused significant changes in soil LMW pools. In Chernozem, the sugar concentrations of soil with plants were up to 60 % higher than those of the bulk reference soil, and amino acids increased by as much as 207 %. The relative abundance of free amino acids in roots did not correlate with the relative abundance of amino acids in soil after six weeks of plant growth. The relative abundance of soil amino acids, that increased after plant growth, was strongly dependent on the type of soil and on the plant species present. We suggest that rather than rhizodeposition being dependent on soil type, it reflects differential microbial metabolization of amino acids in the respective soils. 相似文献
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《Soil biology & biochemistry》2001,33(7-8):1137-1140
Amino acids constitute a major reserve of soil organic-N and studies demonstrating direct uptake of amino acids by plants has indicated that understanding their bioavailability and fate in soil is important to understanding terrestrial N cycling. The aim of this study was to determine the effects of temperature and sorption on the mineralisation of three amino acids (glycine, lysine glutamate) in soil. Amino acid sorption followed the series lysine>glycine>glutamate, whereas mineralisation rate followed the series glutamate>glycine>lysine. These observations support the concept that sorption reduces the bioavailability of amino acids to the soil microbial population. Although the amino acids were used preferentially for making new biomass rather than respiration, differences were apparent between the individual amino acids with microbial assimilation efficiency (biomass production) following the series, lysine>glycine>glutamate. Our results suggest divergences in the uptake and metabolism of the individual amino acids with a rapid mineralisation of amino acids which readily enter general metabolic cycles (e.g. glutamate) compared to the amino acids which typically form the terminus of metabolic pathways (e.g. lysine). Temperature significantly affected the rate of amino acid mineralisation which increased up to 30°C (Q10=2.0) followed by a decline as the temperature approached 40°C. Rapid mineralisation occurred even at very low temperatures (1°C). Amino acid mineralisation across three experimental soil treatments followed the trend acidified>control>eroded soil. In summary, the results indicate that mineralisation is highly amino acid species dependent, has a mesophilic optimum, is retarded by sorption and is most rapid in soils which are not degraded. 相似文献
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Plants are capable of taking up nitrogen (N) in both organic and inorganic forms, so the concentrations and relative proportions of different N forms in soils are likely to be important determinants of their N nutrition. Therefore, there is a need for greater knowledge of the N profiles of soils. In the study presented here we examined the potential plant-available N in soils from four sites with various agricultural histories (one recently fertilized), using small tension lysimeters to collect free and bound amino acids and inorganic N forms in solution, with minimal soil disturbance and with intact plants present. Subsequent analysis showed that concentrations of free amino acids ranged from 0.1 to 12.7 μM, whereas concentrations of bound amino acids were on average 50 times higher, and higher than ammonium and nitrate concentrations in all three unfertilized soils. In contrast, nitrate strongly dominated in the fertilized soil. Bound amino acids are likely to represent a potential replenishment pool for free amino acids, so the abundance and rate at which amino acid-containing substances are depolymerized might be important determinants of the availability of free amino acids. Our results highlight the need for further research on the liberation of free amino acids from polymers in agricultural soil, and the importance of bound amino acids as N sources for plants. 相似文献
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Summary Amino acids were extracted from fertility plots of a loamy sand soil with 0.05 M HF-HCl and with a 10% ethanol solution (free amino acids) and analysed by reverse-phase high performance liquid chromatography (HPLC). The total quantities of amino-N compounds analysed were 4.4 g/g soil for the acid treatment and 22.6 g/g soil for the 10% ethanol extract. Glycine and glutamic acid were the most abundant of 15 amino-N compounds in the HF-HCl extracts, whereas glutamic acid and ornithine + NH+
4 were found in the highest concentration in the 10% ethanol extracts. The HF-HCI pretreatment is used to increase the efficiency of the extraction of soil organic matter. Although this pretreatment removed some amino acids, the acids extract less than 1% of the total amino-N content of the crude soil extracts. The pretreatment, therefore, was not overly destructive. Comparisons between the amino acids extracted from the fertility plots were not conclusive, except for glycine, which was greater in concentration in the higher fertilizer N plots of the same crop rotation. 相似文献