The evolution of modern eukaryotic phytoplankton

The community structure and ecological function of contemporary marine ecosystems are critically dependent on eukaryotic phytoplankton. Although numerically inferior to cyanobacteria, these organisms are responsible for the majority of the flux of organic matter to higher trophic levels and the ocean interior. Photosynthetic eukaryotes evolved more than 1.5 billion years ago in the Proterozoic oceans. However, it was not until the Mesozoic Era (251 to 65 million years ago) that the three principal phytoplankton clades that would come to dominate the modern seas rose to ecological prominence. In contrast to their pioneering predecessors, the dinoflagellates, coccolithophores, and diatoms all contain plastids derived from an ancestral red alga by secondary symbiosis. Here we examine the geological, geochemical, and biological processes that contributed to the rise of these three, distantly related, phytoplankton groups.     

Comment on "Climate, critters, and cetaceans: Cenozoic drivers of the evolution of modern whales"

Marx and Uhen (Reports, 19 February 2010, p. 993) suggested that correlated diversity changes in the fossil record of whales and diatoms reflects secular evolutionary signals of underlying ecological drivers. We question the meaning of this association and outline avenues for more complete testing of correlations between productivity and marine consumers through geologic time.     

Comment on "Positive selection of tyrosine loss in metazoan evolution"

Tan et al. (Reports, 25 September 2009, p. 1686) argued that loss of tyrosine residues from proteins in metazoans was driven by positive selection to remove potentially deleterious phosphorylation sites. We challenge this hypothesis, providing evidence that the high guanine-cytosine (GC) content of metazoan genomes was the primary driver in the loss of tyrosine residues.     

Comment on "Preindustrial to modern interdecadal variability in coral reef pH"

Based on the boron isotopic composition of coral from the southwestern Pacific, Pelejero et al. (Reports, 30 September 2005, p. 2204) suggested that natural variations in pH can modulate the impact of ocean acidification on coral reef ecosystems. We show that this claim cannot be reconciled with other marine carbon chemistry constraints and highlight problems with the authors' interpretation of the paleontologic data.     

Comment on "Gene regulatory networks and the evolution of animal body plans"

Davidson and Erwin (Reviews, 10 February 2006, p. 796) argued that known microevolutionary processes cannot explain the evolution of large differences in development that characterize phyla. Instead, they proposed that phyla arise from novel evolutionary processes involving large mutations acting on conserved core pathways of development. I question some of their assumptions and show that natural selection adequately explains the origin of new phyla.     

Comment on "The geometry of musical chords"

Tymoczko (Reports, 7 July 2006, p. 72) proposed that the familiar sonorities of Western tonal music cluster around the center of a multidimensional orbifold. However, this is not true for all tonal progressions. When prototypical three-voice cadential progressions by Bach converge on the tonic, the chords migrate from the center to the edge of the orbifold.     

Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens"

Mekel-Bobrov et al. (Reports, 9 September 2005, p. 1720) suggested that ASPM, a gene associated with microcephaly, underwent natural selection within the last 500 to 14,100 years. Their analyses based on comparison with computer simulations indicated that ASPM had an unusual pattern of variation. However, when we compare ASPM empirically to a large number of other loci, its variation is not unusual and does not support selection.     

Structural dynamics of eukaryotic chromosome evolution

Large-scale genome sequencing is providing a comprehensive view of the complex evolutionary forces that have shaped the structure of eukaryotic chromosomes. Comparative sequence analyses reveal patterns of apparently random rearrangement interspersed with regions of extraordinarily rapid, localized genome evolution. Numerous subtle rearrangements near centromeres, telomeres, duplications, and interspersed repeats suggest hotspots for eukaryotic chromosome evolution. This localized chromosomal instability may play a role in rapidly evolving lineage-specific gene families and in fostering large-scale changes in gene order. Computational algorithms that take into account these dynamic forces along with traditional models of chromosomal rearrangement show promise for reconstructing the natural history of eukaryotic chromosomes.     

Comment on "A test of the snowball theory for the rate of evolution of hybrid incompatibilities"

Matute et al. (Reports, 17 September 2010, p. 1518) tested the theory that the number of genes involved in hybrid incompatibility increases faster than linearly. However, the method they used is inappropriate because it detects genes that are haploinsufficient in a hybrid background but that would not contribute to lethality in wild-type hybrids, thus overestimating the frequency of hybrid inviability.     

Comment on "Age and evolution of the Grand Canyon revealed by U-Pb dating of water table-type speleothems"

Polyak et al. (Reports, 7 March 2008, p. 1377) reported speleothem data leading to their inference that the western Grand Canyon incised much earlier than previously thought. This contradicts several lines of published geological knowledge in the region, hinges upon unjustified hydrogeological assumptions, and is based on two anomalous data points for which we offer alternative explanations.     

现代服装表演的风格演变趋势分析

在现代服装表演舞台上,展示着不同风格、不同材质与不同功能的服装,其表演风格具有丰富性与多元性。因此,本文对现代服装表演风格的演变展开了研究,以此掌握了其服装表演的发展。     

现代生物技术对生物进化的影响

现代生物技术主要对生物体遗传物质进行操作和修饰,修饰后的生物不仅自身性状发生变化,还会对环境存在潜在的影响,这两种因素综合起来对生物的进化产生了深远的影响。     

Comment on "The great Sumatra-Andaman earthquake of 26 December 2004"

Lay et al. (Research Articles, 20 May 2005, p. 1127) estimated a 600-km length for the tsunami source region. Adding tide-gauge data from Paradip, the northernmost of the Indian east-coast stations and therefore the most critical constraint on the northern extent of the source, we estimate that its length was greater by approximately 30%.     

Comment on "The illusion of invariant quantities in life histories"

Nee et al. (Reports, 19 August 2005, p. 1236) used a null model to argue that life history invariants are illusions. We show that their results are largely inconsequential for life history theory because the authors confound two definitions of invariance, and rigorous analysis of their null model demonstrates that it does not match observed data.     

Comment on "The Brain of LB1, Homo floresiensis"

Endocast analysis of the brain Homo floresiensis by Falk et al. (Reports, 8 April 2005, p. 242) implies that the hominid is an insular dwarf derived from H. erectus, but its tiny cranial capacity cannot result from normal dwarfing. Consideration of more appropriate microcephalic syndromes and specimens supports the hypothesis of modern human microcephaly.