Patterns of diel activity and species richness in young and small fishes of European streams: a review of 20 years of point abundance sampling by electrofishing

Originally developed to assess the relative abundance of ≥1+ fishes in large rivers, point abundance sampling by electrofishing (PASE) was adapted for 0+ fishes in the mid‐1980s. Being both economical and widely applicable, PASE for 0+ fish has become a commonly used sampling approach in Europe, but its use for estimating 0+ fish density and species richness has attracted particular concern because of size and species selectivity. As such, this review is both timely and necessary. It summarizes the development of PASE and evaluates its various applications: studies of 0+ fish community composition, relative abundance and density, species richness (S), population size structure, larval and juvenile growth dynamics, microhabitat use, diel dynamics of species–species and species–microhabitat interactions, and the analysis of data emanating from PASE databases. The use and potential misuse of replicate sampling in estimates of S are examined, with PASE data from various European rivers re‐analysed to assess geographical patterns in 0+ fish S. Comparisons of PASE and other approaches for estimating 0+ fish density and species richness have all demonstrated PASE to be cost‐effective and relatively reliable, but sampling accuracy and precision do decrease as fishes enter the juvenile period of development.     

A comparative study of three different methods for assessing fish communities in a small eutrophic lake

Sound decisions on the management of fish stocks depend on knowledge about the species composition, number, biomass and size structure of existing populations. Accordingly, the ability to make solid population estimates is essential. In this study, a 2.15 ha lake was completely drained and the total number of fish was recorded and amounted to 180,915 individuals divided into seven species having a total weight of 1,395 kg. Before the draining, three commonly used methods in fish surveys were applied: multi‐mesh gillnets, point abundance sampling by electrofishing (PASE) and mark–recapture. Following the determination of the actual number and size distribution of each species, we evaluated the efficiency of the methods and found that gillnets caught a relatively high number of species (five out of seven) and thus proved to be the best tool for mapping species richness. However, gillnets were size selective towards larger individuals of perch (Perca fluviatilis) and did not catch roach (Rutilus rutilus) <5 cm. In contrast to gillnets, PASE was very effective at catching YOY fish in the shore zone but selected for larger‐sized roach. In sum, gillnetting proved to be the most accurate method for estimating species composition, PASE also being useful. Overall, mark–recapture provided relatively good estimates of population size but small‐sized (<11 cm) roach proved not to be well suited for mark–recapture surveys. We conclude that the best method(s) surveying fish stocks depends on various factors such as target species, size distribution and the purpose of the survey.     

Comparison of traditional and environmental DNA survey methods for detecting rare and abundant freshwater fish

1. Detecting rare species is often a necessity for conservation and management, yet challenging for many field survey methods. Environmental DNA (eDNA) is a highly promising solution that has been shown to outperform many established survey methods.
2. Macquarie perch (Macquaria australasica) is an endangered native species that has declined significantly in range and abundance. Detection of M. australasica was compared with an abundant alien fish species (Oncorhynchus mykiss) using eDNA and three conventional survey methods: gill nets, electrofishing and fyke nets.
3. eDNA occupancy estimates for both fish species were compared using four different models to investigate what effect these differences have on false positives and false negatives for the rare and common fish species. These models used unadjusted eDNA detections in water samples, eDNA detections that have been screened using a limit of detection method to remove potential false positives, eDNA data supplemented with a second survey method, or eDNA data augmented with sequencing of positive polymerase chain reaction replicates.
4. eDNA surveying as a single detection method was found to be more efficient and sensitive compared with each capture method separately and combined. Occupancy estimates for the common and rare species did not vary significantly between the four site occupancy-detection models, suggesting that supplementary data may not have as much effect on occupancy estimates compared with other approaches such as temporal or spatial sampling.
5. We conclude that eDNA outperforms the three established survey methods for both a rare and common freshwater fish species. Although there was no significant effect of augmenting eDNA survey methods with other survey data, additional data may improve confidence in detection, and provide confirmatory evidence for unexpected or new detections of a species.

     

Electrofishing in streams of low water conductivity but high biodiversity value: Challenges,limits and perspectives

Electrofishing in streams of low water conductivity has technical limitations leading to the widespread use of poison fishing. In theory, provided a high enough voltage gradient can be created in water, electrofishing should be possible in all but the lowest of conductivities (<10 µS/cm). Using custom‐made equipment delivering up to 1,500 V DC, tests were carried out in French Guiana on 27 streams with water conductivity as low as 16 µS/cm. Approximately 5,800 fish of 93 species were captured, with an electrofishing mortality rate of 1.83%. Poison treatments were used within enclosed sections to assess how efficient multiple pass electrofishing removal is when assessing species richness and population number. The Chao II estimator on 2 electrofishing passes gave the best results for species richness, but rare species can elude electrofishing. Estimates of total fish abundance (i.e. all species pooled) were possible with the use of depletion models. Capture efficiencies by species were highly biased, however, and abundance could be underestimated for the most difficult species to catch. These results show that with the right equipment and settings, electrofishing can be an efficient alternative to poison fishing surveys in small tropical streams of low water conductivity but high biodiversity value.     

Can fish sampling protocol (CEN, 2005) be amended for Mediterranean lakes?

The CEN (2005) methodology for fish monitoring of mesotrophic to eutrophic Mediterranean lakes was evaluated. The contribution of gillnet (benthic and pelagic) and electrofishing catches on species richness was examined. Additionally, the contribution of benthic gillnet sampling effort on species richness and precision of catch‐per‐unit‐effort (CPUE) estimates, considering both number of specimens (ΝPUE) and biomass (BPUE), was assessed. Subsequently, the impact of reduction in sampling effort on the parameters mentioned above was estimated and the effort needed to acquire the desired precision level considering different NPUE values was modelled. The use of different sampling gears was found to contribute to species richness assessment, while sampling effort could be reduced in the deepest zones of the lakes. The resultant model can reliably guide assessment of the sampling effort required in the Mediterranean and central European lakes with high fish densities.     

Abiotic and biotic associations between the round goby Neogobius melanostomus and tubenose goby Proterorhinus marmoratus with the endangered northern madtom Noturus stigmosus in Canada

1. Quantifying habitat associations and threats to the persistence of imperilled species is a fundamental step for initiating species recovery efforts, but the traits associated with species imperillment (e.g. rarity and vulnerability to stressors) also limit the ability to empirically inform recovery strategies. Novel sampling designs and modelling approaches are therefore needed to quantitatively assess habitat associations and the threats to species persistence.
2. To improve the understanding of habitat associations and threats for one of the rarest endangered freshwater fish species in Canada, northern madtom (Noturus stigmosus), two‐species occupancy models were developed with two invasive gobies: round goby (Neogobius melanostomus) and tubenose goby (Proterorhinus marmoratus). Models were parameterized with data from a multi‐year benthic trawling survey of two large Great Lakes tributaries in southern Ontario, Canada, and subsequently used to evaluate the need for reducing measurement error with future sampling efforts.
3. The probability of detecting northern madtom in the St. Clair (0.163) and Thames (0.194) rivers was low compared with round goby (St. Clair, 0.827; Thames, 0.833) and tubenose goby (St. Clair, 0.297). The best occupancy models indicated a negative association between northern madtom and round goby in the St. Clair River and the importance of gravel substrate for northern madtom.
4. Up to 16 repeated non‐detections using benthic trawls are needed to be 95% confident that northern madtom is absent at a site, indicating that current sampling approaches are likely inadequate.
5. Despite low detection probabilities, intensive trawling surveys combined with the two‐species occupancy modelling framework provided vital information for describing habitat associations for northern madtom and identified a significant negative association with round goby. Nonetheless, alternative sampling methods to improve the detection probability of northern madtom would allow a more robust evaluation of habitat associations and would provide more information on the negative association with round goby.

     

Quantifying fish species richness and abundance in Amazonian streams: assessment of a multiple gear method suitable for Terra firme stream fish assemblages

A multigear sampling method to quantify fish richness and abundance in Amazonian Terra firme streams was assessed. This method is based on the four‐pass removal method using the combined application of different nets. The efficiency of the method was explored over 10 replicated sites along three streams over day, night and seasons. Use of four successive passes allowed both abundant and rare species to be collected and the abundance of common species to be estimated. On average, a high proportion (41%) of rare species was collected per sample (only one or two individuals) after four fishing passes. The efficiency of the sampling method to detect species richness per sample between successive passes was estimated using an autosimilarity approach. Although species richness and abundance increased with successive passes, no major differences were obtained between the third and fourth pass. A single pass considerably underestimated the richness and abundance of species in these type of streams, and night sampling also increased beta‐diversity by at least 20%. Abundance estimates demonstrated high efficiency with an overall sampling error of only 8 and 11% for samples and single species, respectively. Capture efficiency differed among fish species exhibiting different ecological traits and showed significant differences among seasons for total samples. Results supported the robustness of the method and its suitability to quantify fish richness and abundance in small, wadeable Amazonian Terra firme streams inhabited by highly diverse fish assemblages.     

Using occupancy models to assess the effectiveness of underwater cameras to detect rare stream fishes

1. Many conservation efforts for freshwater fishes have been undertaken; however, continuing the monitoring of both the distribution and the abundance of species to determine the effectiveness of these actions can be difficult. As species increase in rarity, they are more difficult to detect in the field, making inferences on occupancy less reliable.
2. Conventional sampling methods, such as electrofishing and seining, require the physical handling of rare fishes, which may cause stress and mortality and, consequently, compromise conservation goals and limit monitoring programmes. Non‐invasive surveillance methods, including underwater video, are playing an increasingly important role.
3. In this study, occupancy models were used to estimate the detection probability of underwater cameras as an alternative to the conventional sampling methods for rare stream fishes. Redside dace (Clinostomus elongatus), a small minnow listed as Endangered, was used as a model organism for rarity. A total of 69 historical redside dace sites were sampled using three sampling methods to determine the effect of gear type on detecting and identifying the habitat preferences of this rare minnow.
4. On average, using multiple underwater cameras is as effective at detecting a rare minnow as conventional sampling methods (backpack electrofisher and seine) and causes no harm.
5. The detection probability of both underwater cameras and backpack electrofishing were adversely affected by turbidity, whereas seining was positively affected by stream velocity. The probability of occupancy of redside dace is driven by open channels and sediment size, and this provides a strong basis for informing stream restoration projects.
6. The use of multiple underwater cameras over conventional sampling methods is recommended when sampling for rare and endangered minnows in systems with low turbidity.

     

Occupancy dynamics of rare cyprinids after invasive fish eradication

1. The eradication of invasive species is a management strategy implemented to eliminate adverse impacts of invaders on native species communities. After eradications, follow‐up studies are done to confirm eradication of the invasive species and the short‐term recovery of the native species, but long‐term monitoring to confirm full population recovery and stability is often not completed.
2. In this study, long‐term monitoring of native fishes was carried out over 5 years after the eradication of an invasive fish from the Rondegat River, South Africa. Forty‐six sites distributed along four river sections were sampled for presence/absence using underwater cameras and snorkel surveys. Density data were collected by snorkel surveys.
3. Using multi‐season occupancy models, the annual probability of colonization and local extinction of the native fishes and annual rate of change in occupancy along the river were estimated. Changes in native fish densities across time and across the control and treatment sections were analysed using Kruskal–Wallis analysis, followed by Dunn's post‐hoc test.
4. Probability of colonization and local extinction differed for each native fish species and may have been affected by extrinsic factors, such as rainfall, and intrinsic density‐dependent factors, hypothesized from the density data. The occupancy rates of change revealed that the two Near Threatened fish species have reached an occupancy dynamic equilibrium but the Endangered fish has not, suggesting that other conservation efforts may be needed.
5. Long‐term monitoring of native fishes after an eradication programme has confirmed the successful removal of the invader and the recovery and stability of the community. However, successful eradication was not sufficient for full recovery of all species; additional conservation management strategies are needed to secure the population stability and persistence of endangered fishes. We recommend that eradication programmes, regardless of locality, should employ long‐term monitoring to ensure full recovery of a native fish community.

     

Sponge morphological diversity: a qualitative predictor of species diversity?

1. To the non‐specialist, problems are often associated with the quantification of sponge species diversity, as colour, shape and size can be highly variable within a single species. These variables can lead to an under‐estimation of the contribution of sponges to the biodiversity of the benthos especially during biological surveys. 2. Sponge species diversity (Shannon H′ values), richness (mean number of species) and morphological diversity (Shannon H′ values) were sampled at six sites (6 m depth intervals) on vertical (90°) and inclined surfaces (45°) experiencing different flow regimes at Lough Hyne Marine Nature Reserve (Ireland). Morphological diversity was sampled independently of species diversity. The time taken for the collection of both species and morphological diversity was recorded. 3. Morphological diversity was positively correlated with both sponge species diversity (r²=0.87, p<0.05) and sponge species richness (r²=0.70, p<0.05). Linear regression was found to be significant for both the relationships (p<0.05 for each F‐value). A sigmoidal relationship (r²=0.97, p<0.05) was found between morphological and species richness which proved to be significant (F‐value 40.67, p<0.05). Separate Bray–Curtis dendrograms and correspondence analysis of morphological and species community compositions at the six sites showed very similar clustering and four major clusters were identified. 4. The results of the present study indicate that sampling of sponge morphological diversity, rather than sponge species diversity and richness may be used as a qualitative estimate of sponge species diversity. Sampling of morphological diversity is much less time consuming, both in the field and laboratory, than collecting species diversity data and no specialist knowledge is required. Consideration is given to the use of such relationships in biological surveys and bio‐monitoring. Copyright © 2001 John Wiley & Sons, Ltd.     

Defining critical habitat conditions for the conservation of three endemic and endangered cyprinids in a Mediterranean intermittent river before the onset of drought

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Spatial distribution pattern and physical – biological interactions in the larval notothenioid fish assemblages from the Bransfield Strait and adjacent waters

The Bransfield Strait and adjacent waters represent one of the most important areas of larval retention off the Antarctic Peninsula. The species composition of larval fish assemblages has been described in detail in previous surveys carried out in the area, but the role of environmental parameters influencing the spatial distribution of early life stages was poorly known. By applying generalized additive models and multivariate analyses, we evaluated the role of environmental variables in shaping the small‐scale distribution of larval fish and investigated the spatial structure of the larval assemblage. It consisted of a few dominant notothenioid species, such as Champsocephalus gunnari, Lepidonotothen squamifrons, Lepidonotothen larseni, Pleuragramma antarctica and Trematomus scotti, and several other rarely caught species. Sea water temperature, salinity and sampling depth were the most important factors determining the spatial distribution of fish with different relative contributions, together explaining more than 80% of total deviance observed. Species richness was mostly affected by salinity, probably due to the narrow range of salinity preference by the species. Cluster analysis of abundance and presence data identified six and five distinct groups, respectively, each of them with substantial contributions of single or rarely two species. Differences in reproductive strategies of adult populations and spatial distribution of early life stages driven by different larval behaviour in response to environmental factors contribute to maintaining a well‐structured larval fish assemblage, ensuring spatial and food niche partitioning.     

黄河口渔业资源底拖网调查采样断面数对资源量指数估计的影响

为查明采样强度对多种类渔业调查中资源量指数估计的影响,实验根据2013年8月、10月和2014年2月、5月黄河口渔业资源底拖网调查数据,选取短吻红舌鳎、方氏云鳚、矛尾虾虎鱼、枪乌贼、口虾蛄、日本蟳和小型鳀鲱鱼类为调查目标,利用计算机模拟方法,以相对估计误差(REE)、相对偏差(RB)、变异系数(CV)和准确度变化率(ACR)等为评价指标,研究了调查样本量对不同种类资源量指数估计的影响。结果显示,各种类资源量指数估计的REE、CV和ACR随断面数增加均逐渐降低并趋于稳定;除在断面数3减到1时,日本蟳、口虾蛄和方氏云鳚等个别种类RB绝对值增大外,其他RB不存在一致性的增大或减小趋势。研究表明,由于不同种类的分布存在时空差异,不同种类需要的调查断面数不同;当目标种类数量空间分布变异较小时,减少调查断面数对采样精确度影响较小,反之则需要更多调查断面数。对于多种类渔业资源调查,需要综合权衡各目标种类来确定最适调查断面数。     

Sampling fish assemblages in forested floodplain wetlands

Abstract– Four quantitative (area-standardized electrofishing, trap nets, small-mesh [1.3 and 2-cm bar mesh] gill nets, large-mesh [2.5 and 5-cm bar mesh] gill nets) and two qualitative (non-standardized electrofishing, dip netting) sampling techniques were concurrently used to capture larval to adult fish in forested wetland habitats on seasonally inundated floodplains of two Alabama (USA) streams. Standardized area electrofishing appeared to be the best sampling technique for collecting and quantifying species because of high catch rate, broad species and size coverage, and rapid sampling. Electrofishing accounted for most fish (47 and 57% of pooled catch), almost all taxa, and a broad range of fish sizes. Large-mesh gill nets captured few fish (2% and 8%), a distinct subset of the species present, and the largest fish. Light traps were the most efficient and taxa-comprehensive sampling technique for larval fish. Light traps captured the vast majority of the pooled larval fish catch, including 6 of 7 families recorded at the sites. Larval fish dip netting captured larval fish of most families known to be present but in low numbers. For surveys of species composition and rapid bioassessments, nonstandardized electrofishing and larval fish dip netting appear adequate. For intensive research studies, the combination of area electrofishing, large-mesh (and in some cases small-mesh) gill nets, and light traps provide thorough and comprehensive data on wetland fish assemblages.     

Development and evaluation of a fish‐based index to assess biological integrity of Mediterranean streams

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Associations between stream hydrogeomorphology and co‐dependent mussel–fish assemblages: evidence from an Ohio,USA river system

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Understanding imperfect detection in a San Francisco Estuary long‐term larval and juvenile fish monitoring programme

Imperfect detection can present a significant challenge when monitoring for a rare and imperilled species. Here, a long‐term larval and early‐juvenile fish monitoring programme in the upper San Francisco Estuary was examined to evaluate its overall reliability in detecting various fish species, including the imperilled delta smelt, Hypomesus transpacificus McAllister, for which the programme was designed. Using occupancy modelling, detection probability of species with pelagic larval or juvenile life stages was found to be generally high (≥.95) based on the current sampling effort of three larval net tows per site. However, detection probability can vary considerably from year to year depending on the species’ level of larval production. Water temperature and turbidity were identified as important predictors of occurrence for young‐of‐year delta smelt, longfin smelt Spirinchus thaleichthys (Ayres) and striped bass Morone saxatilis (Walbaum), and there was evidence for fish size selectivity by the sampling gear in all three species. These results highlight the need to consider adaptively managing detection probability by increasing sampling effort in years when young‐of‐year delta smelt abundance is expected to be low, especially when information on the species’ occurrence at a particular region is critical.     

Does habitat occupancy by lake trout and lake whitefish in large lakes match published thermal habitat envelopes?

Habitat occupancy patterns of lake trout (Salvelinus namaycush) and lake whitefish (Coregonus clupeaformis) in two large Canadian Shield lakes were modelled based on detections of fish from repeated depth‐stratified surveys over several summers. Lake trout and lake whitefish consistently occupied sites outside traditional thermal envelopes and were not detected at some sites within these ranges. This included the metalimnion and shallow epilimnion for lake trout and lake whitefish in Lake Opeongo. Physical habitat covariates were not important in defining lake trout habitat in both lakes. Physical habitat as represented by the hardness/softness gradient based on acoustic substrate surveys was important for lake whitefish in Lake Opeongo but not in Smoke Lake. In addition, thermal envelopes for lake whitefish differed between the lakes possibly because of differences in substrate slope. The wash zone of lakes, where the thermocline contacts the substrate, appears to be a physical habitat feature for lake whitefish in some lakes. Lake whitefish also exhibited diurnal activity behaviour that was reflected through greater detection rates in the morning versus the afternoon. By accounting for imperfect detection, true estimated overall occupancy of lake trout and lake whitefish increased 0.15–0.30 over naïve occupancy. Thermal habitat envelopes for lake trout and lake whitefish are wider than previously thought. Lake trout occupied a consistent thermal habitat envelope while lake whitefish varied between lakes likely because of lake specific differences in basin morphology and wash zone.     

Influence of aquatic plant‐specific habitat on an assemblage of small neotropical floodplain fishes

Dibble ED, Pelicice FM. Influence of aquatic plant‐specific habitat on an assemblage of small neotropical floodplain fishes.
Ecology of Freshwater Fish 2010: 19: 381–389. © 2010 John Wiley & Sons A/S Abstract – This study investigated the effects of plant‐specific habitat on the distribution of young and small adult fishes in lagoons of the Upper Paraná River floodplain, Brazil. We compared fish catch per unit effort (CPUE) and species richness and used an indirect gradient analysis to investigate fish‐plant relationships within three aquatic macrophytes beds (Cabomba furcata, Eichhornia azurea, Nymphaea amazonum), and explored microhabitat influence (indexed by eight variables related to physical structure and water quality) on the structure of fish assemblages. Rarefaction analysis was used to compare fish species richness among the vegetated habitats. We captured a total of 1599 fish constituting 23 species, 7 families and 3 orders. Fish CPUE and species richness increased relative to microhabitat structure innate to the macrophytes; higher CPUE and richness were observed in C. furcata beds, a submerged aquatic macrophyte with finely dissected leaves. On the contrary, N. amazonum, a species that provides low microhabitat complexity, harbored fewer individual fish and number of species. Reproduction dynamics, hydrology and the amount of available plant‐generated habitat structure (surface effect) contributed to the disproportionally high number of individuals captured during the dry season. Our data suggest that the microhabitat physical structure (e.g., edge distance, stem density and patch size) provided by macrophyte beds in the lagoons of the Upper Paraná River may play a more important role than physicochemistry (e.g., oxygen, temperature and pH) at mediating distribution patterns of small‐sized fishes.