Factors influencing earthworm communities in post-industrial areas of Krakow Soda Works

Application of earthworm in soil re-cultivation and re-creation in post-industrial ecosystems make a big challenge for temporal applied zoology. The sediments of the Krakow Soda Works “Solvay” have undergone land reclamation in different ways: older sediments traps were left without any re-cultivation practices; meanwhile the newest ones were reclaimed using standard method (new soil cover planted with combination of grass and leguminous plants). The effect of different treatments on community and population structure of earthworm was estimated during consecutive years 1999–2000. Six localities differing in time of establishment, reclamation processes, vegetation type and soil properties were chosen. Nine species were recorded, among which Aporrectodea caliginosa occurred in all localities, being also the most abundant. Two other species, Lumbricus rubellus and Dendrobaena octaedra, which are epigeic species, become most important in forest assemblages and were characteristic for communities of older succession processes. Abundance of adult forms as well as total biomass were significantly affected by soil depth (r = 0.75, P < 0.05, r = 0.917, P < 0.001, respectively). Species richness however was connected with higher amount of macroelements and average plant height. Shannon diversity index and its evenness negatively correlated only with forestation (r = –0.67, P < 0.05, r = –0.68, P < 0.05, respectively). Niche overlap (α Pianka) for all analysed species extracted two groups differing in environmental requirements. First contained epigeic earthworms, closely related to plant succession (PCA results), the other one grouped endogeic and anecique species correlated significantly with soil depth and plant density. Community structure of earthworms do not reflects succession changes in post-industrial habitats, but is strongly affected by microhabitat factors in local scale (mainly soil depth and plant density).     

Switch of tropical Amazon forest to pasture affects taxonomic composition but not species abundance and diversity of arbuscular mycorrhizal fungal community

Arbuscular mycorrhizal fungi (AMF) community composition and species richness are affected by several factors including soil attributes and plant host. In this paper we tested the hypothesis that conversion of tropical Amazon forest to pasture changes taxonomic composition of AMF community but not community species abundance and richness. Soil samples were obtained in 300 m × 300 m plots from forest (n = 11) and pasture (n = 13) and fungal spores extracted, counted and identified. A total of 36 species were recovered from both systems, with 83% of them pertaining to Acaulosporaceae and Glomeraceae. Only 12 species were shared between systems and spore abundance of the majority of fungal species did not differ between pasture and forest. Spore abundance was significantly higher in pasture compared to forest but both systems did not differ on mean species richness, Shannon diversity and Pielou equitability. Species abundance distribution depicted by species rank log abundance plots was not statistically different between both systems. We concluded that conversion of pristine tropical forest to pasture influences the taxonomic composition of AMF communities while not affecting species richness and abundance distribution.     

Temperature and substrate effects on C & N mineralization and microbial community function of soils from a hybrid poplar chronosequence

Substrate input as well as climatic factors affect C and N cycling and microbial properties in forest soils. We used a microcosm approach to investigate the response of CO₂ efflux, net N mineralization, and microbial community-level physiological profile (CLPP) to temperature (5 vs. 15 °C) and substrate (with and without sucrose addition) addition in surface mineral soils collected from 4-, 6-, 13-, and 15-year old (ages in 2007) hybrid poplar (Populus deltoides × Populus × petrowskyana var. Walker) stands in northern Alberta. In the early stage of incubation (0–2 h), CO₂ efflux was higher at 5 °C than at 15 °C with little effect from substrate addition, while 24 h after the addition of substrate, CO₂ efflux became higher under the 15 °C incubation. After 72 h incubation, temperature and substrate addition effects on CO₂ efflux subsided and CO₂ efflux rates tended to converge among the treatments. Net N mineralization was significantly affected by substrate addition and stand age, while rates of net ammonification were higher at 5 °C than at 15 °C. Net N mineralization occurred without sucrose addition while net immobilization occurred with sucrose addition. The soil from the youngest stand had the lowest N mineralization rate among the stands for each corresponding substrate-incubation temperature treatment. We used Ecoplates from Biolog™ to study sole-carbon-source-utilization profiles of microbial communities at the end of the incubation. Principal component analysis of C utilization data separated microbial communities with respect to substrate addition, incubation temperature and stand age. Our data showed that organic matter mineralization and microbial substrate utilization were affected by incubation temperature, substrate availability and stand age, indicating that the responses of microbial communities in the studied hybrid poplar plantations to temperature changes were strongly mediated by labile C availability and stand development.     

Old manor parks as potential habitats for forest flora in agricultural landscapes of Estonia

Forest biodiversity conservation in intensively managed agricultural landscapes is a constant concern. The dispersal ability of forest plants is, hypothetically, the major limiting factor in fragmented forest landscapes and, therefore, we tested the validity of the theoretical dispersal scheme for plants in fragmented landscapes: ancient forest > woody corridor > emerging forest patch. To this end, we examined the distribution pattern of forest-dwelling plant species in rural landscapes, specifically the occurrence of common forest plant species in old historical forests and in closed-canopy stands of rural ornamental parks, planted on an agricultural land one–two centuries ago.We found that (i) the shade tolerant plant flora in parks’ stands more resemble forests than woody linear habitats (corridors), (ii) nearly 50% of the local forest species pool was present in parks, (iii) the abundance of seed source habitats and the ecological quality of the target habitat determine success rate of colonization. Models predicted that optimal stand characteristics for forest herbs are a minimum area 2.5 ha, canopy closure 0.7–0.8, basal area of trees 10–20 m² ha^?1 and the presence of moderate understory management.We conclude that only patch-type habitats provide suitable environmental conditions for forest-specific plant species. Many common forest plant species are capable of long-distance dispersal between habitat patches across hostile agricultural land, and accordingly, their dispersal follows a modified scheme of the island biogeography, without intermediary role of corridor habitats. Old rural manor parks provide an ecosystem service for nature conservation by harbouring forest biodiversity, and should be considered as potential refugium habitats.     

An outline of soil nematode succession on abandoned fields in South Bohemia

Secondary succession of nematodes was studied in 1–48-year-old abandoned fields on cambisols in South Bohemia, Czech Republic, and compared with cultivated field and sub-climax oak forests. Bacterivores were the predominant group in the cultivated field whereas in forests root-fungal feeders (mainly Filenchus) were almost as abundant as bacterivores. The total abundance of nematodes in the cultivated field averaged 868 × 10³ ind m⁻². During the first three years of succession the abundance practically did not change (775 × 10³ ind m⁻²), the fauna was still similar to that in cultivated field but the biomass increased mainly due to Aporcelaimellus. Then the abundance increased up to 3731 × 10³ ind m⁻² in 7–8-year-old abandoned fields, plant parasites (Helicotylenchus) dominated and the fungal-based decomposition channel was activated. Later the abundance stabilised at between 1086 and 1478 × 10³ ind m⁻² in 13–25-year-old successional meadow stages with high population densities of omnivores and predators. The total abundance of nematodes was low in the 12–13-year-old willow shrub stage (594 × 10³ ind m⁻²), increased in the 35–48-year-old birch shrub stage (1760 × 10³ ind m⁻²) and the nematode fauna developed towards a forest community. The diversity and maturity of nematode communities generally increased with the age of abandoned fields but the highest values were in meadow stages (81–113 species, 57–68 genera, MI 2.73–3.30). The development of meadow arrested succession towards forests or diverted succession towards a waterlogged ecosystem. The succession of nematodes was influenced by the method of field abandonment (bare soil vs. legume cover, mowing) that affected the formation of either a shrub or meadow stage, and by the soil water status. The composition of the nematode fauna indicated that the soil food web could recover faster from agricultural disturbance under successive meadows than under shrubs.     

Forest floor development and biochemical properties in reconstructed boreal forest soils

Following resource extraction by surface mining in the oil sands region of northeastern Alberta, sites are reclaimed by reconstructing soils using a variety of salvaged organic and mineral materials, and planted to native tree species. This study assessed the influence of three distinct stand types (Populus tremuloides Michx., Pinus banksiana Lamb., and Picea glauca (Moench) Voss) on forest floor development (thickness, morphology, total carbon and nitrogen contents), soil organic matter composition, and associated soil microbial communities. Forest floor and top mineral soil (0–5 cm) samples were collected from 32 sites reclaimed 16–33 years ago. Soil organic matter composition was measured using ramped-cross-polarization ¹³C nuclear magnetic resonance, and microbial communities were characterized using phospholipid fatty acid analysis. Morphological characteristics indicated little mesofaunal or fungal activities within the forest floors. Stands dominated by P. tremuloides fostered more rapid forest floor development than the coniferous (P. banksiana and P. glauca) stands, and showed a significant increase in forest floor thickness with time since reclamation. Within the P. tremuloides stands, forest floor development was accompanied by temporal changes in soil organic matter composition that reflected inputs from the canopy. Soil microbial community composition differed among reclamation treatments of the reconstructed soils, specifically as a function of their subsoil mineral textures, when canopy cover was below 30%. Above 30%, significant differences became apparent among stand types. Taken together, our results document how canopy cover and stand type were both important factors for the reestablishment of plant–soil relationships at these sites. Furthermore, achieving a canopy cover of 30% emerged as a critical threshold point during soil reclamation.     

Effects of land use changes on winter-active Collembola in Sanjiang Plain of China

Sanjiang Plain is the largest concentrated area of freshwater wetlands in China, however nearly 80% of these freshwater wetlands were drained or reclaimed in the past 50 years. It is important to know whether wetlands reclamation would affect soil invertebrates, especially the winter-active invertebrates. During November 2011 to April 2012, we used pitfall traps and in-field direct observation methods to study the activity of collembolans in wetland, and a reclaimed forest plantation and soybean field. In total, 3465 collembolans were captured and identified to 8 species from 6 families. Desoria sp. 1, Desoria sp. 2 and Desoria sp. 3 were the three dominant species. Collembolan abundance and assemblages were significantly affected by the land use changes. The results showed that (1) Collembola captured by pitfall traps showed a highest abundance in wetland, with ∼50% decreased abundance in soybean field, and ∼75% decreased in the forest plantation. (2) Collembola activity changed during the winter season, their activity significantly increased from early winter to late winter; with a peak in March in all three land use types. (3) Collembola assemblages were affected by land use changes with a significant decrease of frequency of Desoria sp. 3 and a significant increase of frequency of Desoria sp. 2 in soybean field and forest plantation. (4) Collembolan densities on the snow surface usually peaked between 1400 h and 1500 h, and decreased quickly when the temperature dropped below freezing. Mean abundance reached 119 individuals m⁻² on the snow surface in wetland, 152 individuals m⁻² in soybean field, and 64 individuals m⁻² in forest plantation. All collembolans moved up and down through the snow profile depending on temperature, no collembolans were found on the snow surface in the evening. Our study indicated that the reclamation of wetland resulted in a significant decrease of abundance and a different assemblage of winter active Collembola in Northeast China, but land use changes did not change their pattern of activity: Collembolans were rarely active in early and middle winter and mostly active in late winter. Their daily densities on the snow surface fluctuated according to both air temperatures and land use types.     

Succession of soil nematodes in pine forests on coal-mining sands near Cottbus,Germany

The succession of soil nematodes from initial planting with Pinus sylvestris seedling to about 30-year-old pine plantations on coal mining sands in the Lusatian lignite-mining district near Cottbus (Germany) was studied and compared with the nematode fauna of a 40-year-old semi-natural pine forest on naturally formed sandy soil. The initial stage was primarily characterised by a very low abundance (20×10³ individuals/m²), which increased over a period of two years to values common in older pine plantations (500–600×10³ individuals/m²). In the semi-natural forest the mean abundance of nematodes was about 1300×10³ individuals/m². Populations of Tardigrada, Rotifera and Enchytraeidae also increased with stand age. Nematode biomass increased from 49 to 543 mg m⁻² in pine plantations and slightly decreased in the semi-natural forest to 301 mg m⁻² over the period of investigation. The early colonisation of the initial stage was by bacterivorous (Acrobeloides) and fungal feeding (Aphelenchoides) nematodes, but the communities diversified as succession progressed with bacterivorous nematodes of the genera Plectus, Wilsonema and Metateratocephalus, root-fungal feeding Filenchus, omnivorous Aporcelaimellus and Eudorylaimus, and predacious Prionchulus becoming abundant. The abundance of plant-parasitic nematodes was very low. The greatest number of nematode genera was found in the semi-natural forest.     

Identifying earthworm's organic matter signatures by near infrared spectroscopy in different land-use systems in Tabasco,Mexico

In the state of Tabasco, South-eastern, Mexico, land-use changes such as the conversion of natural into agricultural systems, modify soil quality and the abundance of soil macrofauna, including earthworms. The aim of this study was to characterize by near-infrared spectroscopy (NIRS) the earthworms’ fingerprint in soil, in six sites including natural and agricultural ecosystems with low and high earthworm biomass and low and high earthworm diversity, in order to identify specific wavelengths that discriminate the presence/abundance of earthworm species and functional groups. The spectral region of 1860–1870 nm was significantly correlated with total earthworm density, particularly at one of the sites (Cedar polyculture; r = 0.8, p < 0.05). Earthworm biomass had a specific NIRS wavelength according to the earthworm species and feeding category: 1820 and1860–1870 nm wavelengths were significantly correlated with Polypheretima elongata (r² = 0.7, p < 0.05; mesohumic species) biomass and 2090 nm for biomass of all Lavellodrilus species (polyhumics). Two species had a much wider spectral range: L. bonampakensis and Dichogaster saliens (an epigeic worm; 1690–2300 nm, r² = 0.7, p < 0.05). Biomasses of Periscolex brachysistis and Diplotrema murchiei were not significantly correlated with any near infrared wavelength spectra analyzed. Combining a maximum of 4 species per wavelength, mesohumic earthworms had a wider wavelength spectrum than polyhumics. Therefore, earthworm species diversity, biomass and abundance are associated with soil quality (as measured by NIR spectra) and this relationship varies with species and ecological category. Sites with lower and higher earthworm diversity have lower and higher soil organic matter quality, respectively, as observed by the wider or narrower spectral range with which earthworm biomasses are correlated.     

Soil macroinvertebrate communities and ecosystem services in deforested landscapes of Amazonia

Land use changes in the Amazon region strongly impact soil macroinvertebrate communities, which are recognized as major drivers of soil functions (Lavelle et al., 2006). To explore these relations, we tested the hypotheses that (i) soil macrofauna communities respond to landscape changes and (ii) soil macrofauna and ecosystem services are linked. We conducted a survey of macrofauna communities and indicators of ecosystem services at 270 sites in southern Colombia (department of Caqueta) and northern Brazil (state of Pará), two areas of the Amazon where family agriculture dominates. Sites represented a variety of land use types: forests, fallows, annual or perennial crops, and pastures. At each site we assessed soil macroinvertebrate density (18 taxonomic units) and the following ecosystem service indicators: soil and aboveground biomass carbon stock; water infiltration rate; aeration, drainage and water storage capacities based on pore-size distribution; soil chemical fertility; and soil aggregation. Significant covariation was observed between macrofauna communities and landscape metric data (co-inertia analysis: RV = 0.30, p < 0.01, Monte Carlo test) and between macrofauna communities and ecosystem service indicators (co-inertia analysis: RV = 0.35, p < 0.01, Monte Carlo test). Points located in pastures within 100 m of forest had greater macrofauna density and diversity than those located in pastures with no forest within 100 m (Wilcoxon rank sum test, p < 0.01). Total macroinvertebrate density was significantly correlated with macroporosity (r² = 0.42, p < 0.01), as was the density of specific taxonomic groups: Chilopoda (r² = 0.43, p < 0.01), Isoptera (r² = 0.30, p < 0.01), Diplopoda (r² = 0.31, p < 0.01), and Formicidae (r² = 0.13, p < 0.01). Total macroinvertebrate density was also significantly correlated with available soil water (r² = 0.38, p < 0.01) as well as other soil-service indicators (but with r² < 0.10). Results demonstrate that landscape dynamics and composition affect soil macrofauna communities, and that soil macrofauna density is significantly correlated with soil services in deforested Amazonia, indicating that soil macrofauna have an engineering and/or indicator function.     

The effect of organic matter on the structure of soils of different land uses

In this study, the soil structure of two soils (Haplic Chernozem and Eutric Fluvisol) of different land uses (forest, meadow, urban and agro-ecosystem – consisted of four crop rotations) in Slovakia was compared. The soil aggregate stability was determined with a dependence on the chemical composition of plant residues. The quantity and quality of the organic matter was assessed through the parameters of the C and N in size fractions of dry-sieved and water-resistant aggregates. The soil structure of the forest ecosystem was evaluated as the best of all of forms of land use. Differences in the soil structure under the grass vegetation of a meadow (natural conditions) and urban ecosystem were also recorded. The agro-ecosystem was characterised by a higher portion (55.95%) of the most valuable (agronomically) water-resistant aggregate size fraction of 0.5–3 mm. Values of the carbon management index showed that the larger water-resistant aggregates were, the greater were the changes in the organic matter (r = ?0.680, P < 0.05). In addition, a smaller content of dry-sieved aggregates of the 3–5 mm size fraction was observed with higher contents of soil organic carbon (SOC) (r = ?0.728, P < 0.05) and labile carbon (C_L) (r = ?0.760, P < 0.05); there were also greater changes in the soil organic matter and vice versa, higher contents of SOC (r = 0.744, P < 0.05) and C_L (r = 0.806, P < 0.05) greater contents of dry-sieved aggregates of size fraction 0.5–1 mm. The soil structure of agro-ecosystem was superior at a higher content of cellulose (r = ?0.712, P < 0.05) in the plant residues. The higher content of cellulose and hemicellulose in the plant residue of a previous crop was reflected in a smaller C_L content in the water-resistant aggregates (r = ?0.984, P < 0.05). A correlation was observed between a high content of lignin in the plant residue and a smaller SOC content in the water-resistant aggregates (r = ?0.967, P < 0.05). Lastly, a higher content of proteins in the plant residues (r = 0.744, P < 0.05) supported a greater content of dry-sieved aggregates of the 0.5–1 mm size fraction.     

Evapotranspiration and water use efficiency in different-aged Pacific Northwest Douglas-fir stands

We used the eddy-covariance technique to measure evapotranspiration (E) and gross primary production (GPP) in a chronosequence of three coastal Douglas-fir (Pseudotsuga menziesii) stands (7, 19 and 58 years old in 2007, hereafter referred to as HDF00, HDF88 and DF49, respectively) since 1998. Here, we focus on the controls on canopy conductance (g_c), E, GPP and water use efficiency (WUE) and the effect of interannual climate variability at the intermediate-aged stand (DF49) and then analyze the effects of stand age following clearcut harvesting on these characteristics. Daytime dry-foliage Priestley–Taylor α and g_c at DF49 were 0.4–0.8 and 2–6 mm s^?1, respectively, and were linearly correlated (R² = 0.65). Low values of α and g_c at DF49 as well at the other two stands suggested stomatal limitation to transpiration. Monthly E, however, showed strong positive linear correlations to monthly net radiation (R² = 0.94), air temperature (R² = 0.77), and daytime vapour pressure deficit (R² = 0.76). During July–September, monthly E (mm) was linearly correlated to monthly mean soil water content (θ, m³ m^?3) in the 0–60 cm layer (E = 453θ ? 21, R² = 0.69), and GPP was similarly affected. Annual E and GPP of DF49 for the period 1998–2007 varied from 370 to 430 mm and from 1950 to 2390 g C m^?2, respectively. After clearcut harvesting, E dropped to about 70% of that for DF49 while ecosystem evapotranspiration was fully recovered when stand age was ～12 years. This contrasted to GPP, which varied hyperbolically with stand age. Monthly GPP showed a strong positive linear relationship with E irrespective of the stand age. While annual WUE of HDF00 and HDF88 varied with age from 0.5 to 4.1 g C m^?2 kg^?1 and from 2.8 to 4.4 g C m^?2 kg^?1, respectively, it was quite conservative at ～5.3 g C m^?2 kg^?1 for DF49. N-fertilization had little first-year response on E and WUE. This study not only provides important results for a more detailed validation of process-based models but also helps in predicting the influences of climate change and forest management on water vapour and CO₂ fluxes in Douglas-fir forests.     

Effects of bioenergy crop cultivation on earthworm communities—A comparative study of perennial (Miscanthus) and annual crops with consideration of graded land-use intensity

Energy crops are of growing importance in agriculture worldwide. This field study aimed to investigate earthworm communities of different intensively cultivated soils during a 2-year period, with special emphasis on annual and perennial energy crops like rapeseed, maize, and Miscanthus. These were compared with cereals, grassland, and fallow sites. Distribution patterns of earthworm abundance, species, and ecological categories were analysed by constrained ordination procedures (redundancy analysis; CANOCO) using a set of environmental variables as predictors, such as CN value of harvest residues, SOC and N_t content, soil pH, soil texture, and land-use intensity. The latter was determined by principal component analysis using average soil coverage and intensity of tillage, weed control, and fertilisation as input variables. It was clearly found that land-use intensity was the dominant regressor for earthworm abundance and total number of species. The diversity of earthworm communities was especially enhanced and showed a more balanced species composition in extensively managed soils under grassland, fallow, and Miscanthus. For the total number of species, Miscanthus (5.1 ± 0.9) took a medium position and neither differed significantly from intensively managed rapeseed (4.0 ± 0.9), cereals (3.7 ± 1.1), and maize sites (3.0 ± 1.4), nor from grassland (6.8 ± 1.5) and fallow (6.4 ± 1.0) sites. Total earthworm abundance ranged between 355 (±132) and 62 (±49) individuals m⁻² in fallow and maize sites, respectively.Interestingly, Miscanthus had quite positive effects on earthworm communities although the CN value of harvest residues was very high. It is recommended that Miscanthus may facilitate a diverse earthworm community even in intensive agricultural landscapes.     

Influence of carbon amendments on soil denitrifier abundance in soil microcosms

It is known that carbon (C) amendments increase microbial activity in anoxic soil microcosm studies, however the effects on abundance of total and denitrifier bacterial communities is uncertain. Quantitative PCR was used to target the 16S rRNA gene for the total bacterial community, the nosZ functional gene to reflect a broad denitrifier community, and functional genes from narrow denitrifier communities represented by Pseudomonas mandelii and related species (cnorB_P) and Bosea/Bradyrhizobium/Ensifer spp. (cnorB_B). Repacked soil cores were amended with varying amounts of glucose and red clover plant tissue (0–1000 mg C kg^? 1 of soil) and incubated for 96 h. Carbon amendment significantly increased respiration as measured by cumulative CO₂ emissions. Inputs of red clover or glucose at 1000 mg C kg^? 1 of soil caused increased abundance in the total bacteria under the conditions used. There was about an approximate 2-fold increase in the abundance of bacteria bearing the nosZ gene, but only in treatments receiving 500 or 1000 mg C kg^? 1 of soil of glucose or red clover, respectively. Additions of ≥ 500 mg C kg^? 1 soil of red clover and ≥ 250 mg C kg^? 1 of glucose increased cnorB_P-gene bearing denitrifiers. Changes in abundance of the targeted communities were related to C availability in soil, as indicated by soil respiration, regardless of C source. Applications of C amendments at rates that would occur in agricultural soils not only increase microbial activity, but can also induce changes in abundance of total bacterial and denitrifier communities in studies of anoxic soil microcosms.     

Nitrogen mineralization in the ruderal sub-alpine communities in Mount Uludağ, Turkey

Nitrogen mineralization and nitrification in the soil of sub-alpine ruderal community of Mount Uludağ, Bursa, Turkey was measured for 1 year, under field conditions with Verbascum olympicum and Rumex olympicus being the dominant pioneer species under dry and wet sites, respectively. Seasonal fluctuations were observed in N mineralization and nitrification. The net N mineralization and nitrification were high in early summer and winter, due to high moisture. The annual net N mineralization rate (for the 0–15 cm soil layer) was higher under R. olympicus (188 kg N ha⁻¹ yr⁻¹) than under V. olympicum (96 kg N ha⁻¹ yr⁻¹). A significant positive correlation between net N mineralization and soil organic C (r² = 0.166), total N (r² = 0.141) and water content (r² = 0.211) was found. Our results indicate that N mineralization rate is high in soils of ruderal communities on disturbed sites and varies with dominant species and, a difference in net N mineralization rate can be attributed to organic C, total N and moisture content of soils.     

Conversion of cropland to forest increases soil CH4 oxidation and abundance of CH4 oxidizing bacteria with stand age

We investigated CH₄ oxidation in afforested soils over a 200-year chronosequence in Denmark including different tree species (Norway spruce, oak and larch) and ages. Samples of the top mineral soil (0–5 cm and 5–15 cm depth) were incubated and analyzed for the abundance of the soil methane-oxidizing bacteria (MOB) and ammonia-oxidizing bacteria (AOB) and archaea (AOA) based on quantitative PCR (qPCR) on pmoA and amoA genes. Our study showed that CH₄ oxidation rates and the abundance of MOB increased simultaneously with time since afforestation, suggesting that the methanotrophic activity is reflected in the abundance of this functional group.The development of forest soils resulted in increased soil organic carbon and reduced bulk density, and these were the two variables that most strongly related to CH₄ oxidation rates in the forest soils. For the top mineral soil layer (0–5 cm) CH₄ oxidation rates did not differ between even aged stands from oak and larch, and were significantly smaller under Norway spruce. Compared to the other tree species Norway spruce caused a decrease in the abundance of MOB over time that could explain the decreased oxidation rates. However, the cause for the lower abundance remains unclear. The abundance of ammonia-oxidizers along the chronosequence decreased over time, oppositely to the MOB. However, our study did not indicate a direct link between CH₄ oxidation rates and ammonia-oxidizers. Here, we provide evidence for a positive impact of afforestation of former cropland on CH₄ oxidation capacity in soils most likely caused by an increased population size and activity of MOB.     

Arable weeds,cover crops,and tillage drive soil microbial community composition in organic cropping systems

Cover crops have traditionally been used to reduce soil erosion and build soil quality, but more recently cover crops are being used as an effective tool in organic weed management. Many studies have demonstrated microbial community response to individual cover crop species, but the effects of mixed species cover crop communities have received less attention. Moreover, the relationship between arable weeds and soil microbial communities is not well understood. The objective of this study was to determine the relative influence of cover crop diversity, early-season weed communities, and tillage on soil microbial community structure in an organic cropping system through the extraction of fatty acid methyl esters (FAMEs). A field experiment was conducted between 2009 and 2011 near Mead, NE where spring-sown mixtures of zero (control), two, and eight cover crop species were included in a sunflower–soybean–corn crop rotation. A mixture of four weed species was planted in all experimental units (excluding the no-cover control), and also included as an individual treatment. Cover crops and weeds were planted in late-March, then terminated in late-May using a field disk or sweep plow undercutter, and main crops were planted within one week of termination. Three (2009) or four (2010–11) soil cores were taken to a depth of 20 cm in all experimental units at 45, 32, and 25 days following cover crop termination in 2009, 2010, and 2011, respectively. Total FAMEs pooled across 2009 and 2010 were greatest in the two species mixture–undercutter treatment combination (140.8 ± 3.9 nmol g⁻¹) followed by the eight species mixture–undercutter treatment combination (132.4 ± 3.9 nmol g⁻¹). Abundance of five (2009 and 2010) and seventeen (2011) FAME biomarkers was reduced in the weedy treatment relative to both cover-cropped treatments and the no-cover control. In 2009 and 2010, termination with the undercutter reduced abundance of most actinomycete biomarkers while termination with the field disk reduced abundance of C18:1(cis11) and iC16:0. Canonical discriminant analysis of the microbial community successfully segregated most cover crop mixture by termination method treatment combinations in 2009 and 2010. Microbial communities were most strongly influenced by the presence and type of early-spring plant communities, as weeds exerted a strong negative influence on abundance of many key microbial biomarkers, including the AMF markers C16:1(cis11) and C18:1(cis11). Weeds may alter soil microbial community structure as a means of increasing competitive success in arable soils, but this relationship requires further investigation.     

Tillage and slurry over-fertilization affect oribatid mite communities in a semiarid Mediterranean environment

Fertilization with animal residues together with no-tillage is being widely used in dryland Mediterranean agriculture. The aim of this work is to assess the potential impacts of these combined management practices on oribatid mite species, and to evaluate their potential use as bioindicators of soil disturbances. From an experiment established ten years ago, eight fertilization treatments (including minerals or pig slurries), all combined with minimum tillage (MT) and no-tillage (NT), were studied. Four of these combinations were sampled three times during the winter cereal cropping season. The rest, and a neighbouring oak forest, were only sampled close to the end of the season (May). In total, 34 oribatid species and 4140 individuals were recovered. Oribatid abundance responded positively (p < 0.05) to the reduction of tillage intensity (NT) and marginally (p < 0.1) to slurry fertilization at sowing (close to maximum legislation allowed rate: <210 kg N ha⁻¹ yr⁻¹). At this slurry rate, Shannon index of diversity varied through the season, and was higher in May in MT than in NT plots. The Berger–Parker index of abundance signals plots without slurries as the most disturbed (compared with the forest). Nitrogen slurry over-fertilization reduced abundance of Oribatula (Zygoribatula) connexa connexa , but the impact on the most relevant species depended on the tillage system: Epilohmannia cylindrica cylindrica dominated in MT plots; under NT it was balanced by Tectocepheus velatus sarekensis and Passalozetes (Passalozetes) africanus. Scutovertex sculptus is also very negatively affected by tillage. Oribatida are a good target for the biological indication of soil disturbances associated to agricultural management.     

Forest fuel management as a conservation tool for early successional species under agricultural abandonment: The case of Mediterranean butterflies

In cultural landscapes there are often negative biodiversity consequences of agricultural abandonment and subsequent scrub and forest encroachment, due to homogenization and the loss of early-successional habitats. The common forestry practice of removing understory vegetation to prevent fire hazard (fuel management) probably has the side-effect of ameliorating these consequences, but it is uncertain whether it effectively restores habitats for early-successional species. Here we examine the influence of time since fuel management and management frequency on butterfly assemblages, using a chronosequence of cork oak (Quercus suber) stands spanning about 70 years. Overall species richness increased immediately after management and abundances peaked about 2–3 years later, while both declined thereafter for about 10–20 years to pre-disturbance levels. Richness and abundances were also much higher in recurrently managed stands. Most life history groups showed successional trends similar to the overall species richness and abundances, though consistent positive effects of fuel management were only observed for species with univoltine life cycle, herbaceous layer feeding, larval overwintering, and intermediate body size. Individual species were largely associated with recent and recurrent management, though a few specialists occurred most often in undisturbed stands. These findings suggest that fuel management at <10 years intervals is strongly positive for butterfly assemblages in landscapes under land abandonment. However, to maintain the overall forest biodiversity it is critical that patches of undisturbed habitat are also retained at the landscape scale.     

Comparative analysis of soil microbial communities and their responses to the short-term drought in bog,fen, and riparian wetlands

The frequency of drought is anticipated to increase in wetland ecosystems as global warming intensifies. However, information on microbial communities involved in greenhouse gas emissions and their responses to drought remains sparse. We compared the gene abundance of eubacterial 16S rRNA, nitrite reductase (nirS) and methyl coenzyme M reductase (mcrA), and the diversity and composition of eubacteria, methanogens and denitrifiers among bog, fen and riparian wetlands. The gene abundance, diversity and composition significantly differed among wetlands (p < 0.01) with the exception of the diversity of methanogens. The gene abundance was ranked in the order of the bog = fen > riparian wetland, whereas the diversity was in the riparian wetland ≥ fen > bog. In addition, we conducted a short-term drought experiment and compared microbial communities between control (water-logged) and drought (?15 cm) treatments. Drought led to significant decline in the gene abundance in the bog (16S rRNA, nirS, mcrA) (p < 0.01) and fen (16S rRNA, nirS) (p < 0.05), but not in the riparian wetland. There were no differences in the diversity and composition of denitrifiers and methanogens at all sites following drought. Our results imply that denitrifiers and methanogens inhabiting bogs and fens would suffer from short-term droughts, but remain unchanged in riparian wetlands.