Selection for seed yield in Andean intra-gene pool and Andean × Middle American inter-gene pool populations of common bean

Yields of large-seeded Andean (A) common bean (Phaseolus vulgaris L.) cultivars of Chile and Nueva Granada races are 40 to 60% lower compared to their Middle American (M) counterparts of small-seeded Mesoamerica and medium-seeded Durango races. Our objective was to use the concept of congruity backcrossing between Andean x Middle American inter-gene pool [AM 11833 = A 483 (A)///// A 686 (M) //// PVA 800A(A)/// ‘Carioca’ (M)// Carioca (M)/ G 19833 (A)] and between races within Andean gene pool [i.e., intra-gene pool Andean, AA 11834 = A483 (A)//// ‘Cardinal’(A) /// ‘Blanco Español’(A) // BlancoEspañol (A) / ‘Taylor’ (A)] to compare selection for seed yield improvement of large-seeded Andean beans. Seven hundred sixty seven F₂-derived F₃ (F_2:3) families were produced for each population. Visual appraisal for total plant performance, combined with seed yield from non-replicated plots was used for selection of 551 families in F_2:3, 182 families in F_2:4, and 91 families in F_2:5 in each population. Eight hundred twenty three F_5:6 lines were developed from the 91 F_2:5 families in each population. Visual selection, combined with seed yield in non-replicated plots was again used to select 294 lines in F_5:6 in each population. Similarly, 44 highest yielding F_5:7 lines were selected in AM 11833 and 39 F_5:7 lines in AA 11834. Thus, single plant selections were made in the F₂ and F₅, and plants within each plot were harvested in bulk in F₃, F₄, F₆, and F₇. Thirty nine F_5:8 lines from AA 11834 and 44 lines from AM 11833, parents, and checks were evaluated at Popayán and Quilichao, Colombia in 1998 and 1999. Selected lines in both populations, on average, out-yielded the mean of their large-seeded Andean parents. Mean yield of the lines selected from AM 11833 was 50% higher than AA 11834 lines. Twelve F_5:8 lines out-yielded the highest yielding Andean parents G 19833 and A 483 in AM 11833, whereas only one line yielded significantly higher (p < 0.05) than the highest yielding parent A 483 in AA 11834. However, none of selected lines out-yielded small-seeded Middle American parents used in AM 11833 (A 686 and ‘Carioca’). The mean 100 seed-weight of AA 11834 was 36 g compared to 28 G for AM 11833 F_5:8 lines. Selected lines had similar days to maturity as parents in AM 11833, and matured 3 d later in AA11834. Correlation coefficients between yield and 100 seed-weight were negative in both populations. Yield and days to maturity were positively correlated in AA 11834.     

Genetic diversity in pod and seed quality traits of common bean populations from northwestern Spain

Common bean (Phaseolus vulgaris L.) is an important food in the northwest of Spain where it is consumed as either green pods or dry seeds after cooking. Quality properties play a major role in cultivar acceptance by processors and consumers. To determine if sufficient variation in important culinary and nutritional traits exists within common bean, fifty-nine populations (plus five commercial cultivars) were grown in the northwest of the Iberian Peninsula in three different environments and evaluated for sixteen fresh pod and dry seed quality traits. Populations showed significant differences for pod curvature, length/width and width/thickness ratios of pod and seed, pod and seed texture, volume, hardness, seed coat percentage and water absorption of seed, crude protein, crude fat, crude fiber, toal sugars and starch content. Genotype × environment interaction was significant for fresh pod traits such as curvature, length/width and width/thickness ratios, and texture, and for dry seed traits such as length/width and width/thickness ratios, volume, hardness and water absorption. Estimates of heritabilities and constancies (genotypic/environmental variance) were higher than 0.5 and 1.0 respectively for pod curvature, length/width and width/thickness ratios of pod and seed, seed volume and seed water absorption. There were high correlations of pod texture with seed length/width and width-thickness ratios, seed coat percentage, seed water absorption, crude fat, total sugars, starch content and crude fiber. Pod texture could be used as an important parameter for evaluating both seed culinary and nutritional quality. In addition, 17 populations showed promise as parental material in a breeding program for pod and seed culinary quality and protein content. The culinary and nutritional quality potential of the accessions such as PHA-0171, PHA-0253 and PHA-0257 which are known as Alubias de riñón could be the base material in a breeding program to obtain accessions with a good seed quality.     

Diversity in seed quality traits of common bean populations from Basilicata (Southern Italy)

The diversity of nutritional and culinary traits in 21 populations of common bean from the Basilicata region was studied for three consecutive harvests (1995‐97). The results were compared with the six commercial cultivars widely grown in the region. Some populations deserve particular attention since they had large seeds, high protein content, low trypsin inhibitor levels and short cooking time. The cluster analysis showed that 18 populations clustered in two main groups and that the bush populations were clearly distinguishable from the climbing ones. When phaseolin type and some plant morphological traits were added to the nutritional and culinary traits to classify these populations, it was observed that they resembled the race Peru (Andean gene pool).     

Patterns of genetic diversity in landraces of common bean (Phaseolus vulgaris L.) from Galicia

Knowledge of patterns of genetic diversity among existing cultivars helps to broaden the genetic base of new cultivars and maximizes the use of available germplasm resources. This study examined the organization of diversity for morphological traits in 66 landraces of cultivated common bean (Phaseolus vulgaris) from Galicia and its relationship with phaseolin seed protein diversity. Data on growth habit, seed and pod traits obtained from field evaluations at two locations during the 1989—91 cropping seasons were subjected to multivariate statistical analysis. Cluster analysis based on 14 quantitative variables and five qualitative variables identified 11 groups. The landraces were also characterized by phaseolin electrophoresis. The results allowed separation of these landraces into Middle and Andean American groups, which could be further divided into at least eight groups within the Andean American cultivars and three within the Mesoamerican cultivars. These groups in turn corresponded to the previously described races Nueva Granada and Peru of South American origin, and races Durango, Jalisco and Mesoamerica from the Middle American domestication centre. These results confirm the existence of two major groups of germplasm in the cultivated common bean landraces from Galicia, Mesoamerican vs. Andean American.     

Selection for seed yield in Middle American versus Andean × Middle American interracial common-bean populations

The objective of this study was to compare the seed yield, seed weight, and maturity of random lines derived from two contrasting populations of common bean ( Phaseolus vulgaris L.): Middle American (TR 7790) and Andean × Middle American (TR 7791). TR 7790 involved crosses between common-bean races of Middle American origin only (Mesoamerica and Durango), whereas TR 7791 involved crosses between races of Middle American and Andean origin (Mesoamerica and Nueva Granada). A total of 85 random lines from each of these two double-cross, interracial populations, a bulk sample of both populations, and all parents were evaluated in a replications-in-set design in eight environments in Colombia between 1991 and 1993. The mean yields of parents, population bulk, and lines from TR 7790 were significantly higher (P < 0.05) than those of TR 7791. Six lines in TR 7790 and nine lines in TR 7791 yielded significantly higher (P < 0.05) than the mean of their parents. Four lines from TR 7790 out-yielded the highest-yielding line from TR 7791. Moreover, while three lines from TR 7790 out-yielded its best parent, none of the lines from TR 7791 out-yielded its highest yielding parent. Thus, substantial yield gains should be expected from interracial populations within the Middle American group of common beans, whereas selection for higher seed yield from Andean × Middle American populations would seem problematic.     

Implications of early selection for grain colour on iron and zinc content and productivity of common bean

Brazilian consumers prefer beans of the beige grain colour. Common beans help supply dietary requirements for iron and zinc. The objectives of this study were (i) to determine whether early selection for grain colour affects the iron and zinc content and the grain yield in common beans and (ii) if an association between these characteristics was found, to obtain lines of carioca‐type grains with a high iron and zinc content and good grain yield. We evaluated 96 F_3:4, F_3:5 and F_3:6 progeny at two locations for iron and zinc content and grain yield. We selected 48 progeny for grain colour and chose 48 others at random. We found that early selection for grain colour does not affect the zinc content and grain yield. A positive and high association was found between iron and zinc content, and both iron and zinc content were slightly negatively correlated with grain yield. It is possible to obtain common bean lines combining a high iron and zinc content with good grain yield as long as a selection index is used.     

Traits related to drought resistance in common bean

Common bean (Phaseolus vulgaris L.) is grown in regions where water deficits during reproductive development significantly reduce yield. The purpose of this study was to evaluate the association of specific phenological and physiological traits with drought resistance in common bean. Five genotypes were grown under and near a rain shelter in 1988, and an additional 16 progeny lines were included in 1990. Drought stress determined by the drought intensity index was severe (0.78) in 1988 and more moderate (0.63) in 1990. Water stress reduced the expression of most traits with the exception of days to flower and leaf moisture retention capacity. Seed yield among genotypes was reduced from 22 to 71% due to drought. Yield under stress was correlated with yield under nonstress in 1990 and negatively correlated with the drought susceptibility index in 1988. Yield components which exhibited the largest differential genotypic responses to stress were pod and seed number, whereas seed size was more stable. Genotypic variation was detected in all the partitioning indexes, chiefly harvest index and relative sink strength, and the heritability estimates for these traits were high. The limited genetic variability observed among water relations traits and their role in water conservation would restrict their potential use in the selection for drought resistance in common bean. The differential correlations between phenological, biomass and partitioning traits and the indexes for yield and drought susceptibility would suggest that the most effective approach in breeding for drought resistance in common bean would be based first on selection for high geometric yield followed by selection among the high-yielding individuals for low to moderate levels of the drought susceptibility index. This revised version was published online in July 2006 with corrections to the Cover Date.     

Combining ability for seed yield traits of Chenopodium quinoa breeding lines

For a better understanding of the inheritance of seed yield traits in Quinoa (Chenopodium quinoa) Willd., a half-diallelic crossing experiment with six diverse but uniform breeding lines was conducted. True hybrid plants were detected by means of differences in panicle colour in 14 out of the 15 crosses performed. The agronomic performance of 14 F₂ populations and six parental lines was evaluated in field trials on fertile clay soil. General and specific combining ability of the lines (GCA and SCA) were estimated. Highly significant differences in GCA effects were found between the lines for plant height at maturity, early flowering, early maturity, seed yield and thousand seed weight. Significant SCA effects were only found for plant height at maturity. However, SCA effects were rather small and accounted for 7% of the total variance. The finding of large GCA effects and low SCA effects suggests that best selection results could be expected from crosses between the agronomic best performing genotypes. This revised version was published online in August 2006 with corrections to the Cover Date.     

Growth habit and gene pool effects on inheritance of yield in common bean

Summary To satisfy farmer and consumer preferences, breeding efforts to increase yield potential in common bean must take into account the interrelated effects of growth habit, seed size, maturity, and gene pool on yield expression in segregating populations. To examine the relationships among these traits, a genetic study was conducted to determine the effect of growth habit on yield and seed size in crosses among five bean lines from diverse gene pools. Two parental bean lines had determinate, type I growth habits and large seed size typical of the Neuva Granada-Andean gene pool. Two other lines were tropical Mesoamerican types with type II growth habits and small seed size; and the fifth line, G13625, a landrace of the Jalisco gene pool from the Mexican highlands, had a type IV climbing growth habit and medium seed size. Individual F₂ plants from each cross and parental lines were evaluated for growth habit and yield component traits under high input field conditions. The following season, the evaluations were repeated on random F₃ plants. Of the five parental lines, only G13625 showed significant GCA effects for yield in both the F₂ and F₃ generations. Improved yielding ability of G13625 progeny was associated with an increased expression of climbing bean growth habit traits: guide length, climbing ability, node number on main stem, and plant height. Crosses between Andean x Mesoamerican and Andean x Jalisco genotypes, as well between growth habit type I (Andean x Andean) and between type II (Mesoamerican x Mesoamerican) had very low parent-offspring heritability values for yield. Yield heritability was only significant for crosses between Mesomerican x Jalisco gene pools. An apparent simple genetic control of growth habit modification towards semi-climbing and climbing types is proposed as the major reason for increased yields in these crosses. No genetic linkage between genes controlling growth habit and seed size was detected which might restrict the development of high yielding large-seeded type II lines.     

Genetic control of low temperature tolerance in germination of the common bean (Phaseolus vulgaris L.)

Summary Cultivars tolerant to low temperature during the germination and emergence stages and carriers of the grain quality standards demanded by consumers are needed to increase the success of irrigated common bean in Southern Minas Gerais State. To study the genetic mechanisms controlling these traits and assess the possibility of generating the desirable materials, a diallel cross involving ten cultivars including introductions and pure lines from the breeding program of ESAL was carried out. Speed of germination of the F₂ generation from the crosses was assessed under laboratory conditions at 12°C. The diallel analysis was carried out using Griffing's method IV (1956) and predictions of the cross potential were made by the methodology developed by Jinks & Pooni (1986). The results indicated that the parents differed in germination speed at low temperatures with Small White, A-488 and Rio Vermelho being the most tolerant and Carioca, ESAL 591 the most sensitive. No effect of the reciprocal crosses was observed either for germination percentage or germination speed. The parents A-488, Small White and Rio Vermelho showed the greatest general combining ability. Additive genetic effects predominated for both traits. Our results suggest that cold tolerance can be bred successfully into commercially acceptable cultivars.     

Quantitative trait loci for leafhopper (Empoasca fabae and Empoasca kraemeri) resistance and seed weight in the common bean

A population of 108 common bean recombinant inbred lines (RILs) (F_5:6‐9), derived from a leafhopper (Empoasca fabae and E. kraemeri)‐susceptible cultivar (‘Berna’) and a leafhopper‐resistant line (EMP 419) was used to identify molecular markers genetically linked to leafhopper resistance and seed weight. Bulked segregant analysis and quantitative trait analysis identified eight markers that were associated with resistance to E. fabae, and four markers that were associated with E. kraemeri resistance. Three markers were associated with resistance to both species. A partial linkage map of the bean genome was constructed. Composite interval mapping identified quantitative trait loci (QTL) for resistance to both leaf hopper species on core‐map linkage groups B1, B3 and B7. QTL for seed weight were found close to the locus controlling testa colour and an α‐phaseolin gene.     

Random amplified polymorphic DNA variation within and among bean landrace mixtures (Phaseolus vulgaris L.) from Tanzania

Genetic characterization of 51 individual pure lines from 13 landraces of three common bean (Phaseolus vulgaris L.) mixtures from the southern highlands of Tanzania was undertaken using random amplified polymorphic DNA (RAPD) analysis. A dendrogram generated by cluster analysis from data derived from fragments amplified by 12 random 10-base primers divided the bean individuals onto two main branches with less than 60% genetic similarity. Branches A and B subdivided into two and four clusters, respectively. Mixture 2, comprising three landraces, was the most uniform, most plants appearing on cluster 4 of branch B. Three of the four landraces of mixture 1 appeared on cluster 3 of branch B while the fourth landrace appeared on major branch A. Mixture 3 showed the greatest genetic variation with components appearing on both major branches. The clear separation of the 13 landraces onto two main branches of the dendrogram together with phenotypic characters, notably variation in bean size, suggests that the two groups might represent two distinct gene pools of P. vulgaris. This revised version was published online in July 2006 with corrections to the Cover Date.     

Combining ability for nodulation in common bean (Phaseolus vulgaris L.) genotypes from Andean and Middle American gene pools

Ten F₁'s obtained from crosses among five common bean genotypes of Andean (WAF 15, Mineiro Precoce and Batatinha) and Middle American (BAT 304 and Ouro) gene pools were assessed for their combining abilities for root nodulation with Rhizobium tropici strain CIAT 899. The plants were grown under controlled conditions and evaluated for number of nodules per plant (NN), nodule dry weight (NDW), mean nodule weight (MNW) and plant fresh weight (PFW). The subdivision of the treatment effects on the general (GCA) and specific combining effects (SCA) were performed according to Griffing's diallel analysis method 2, model 1. The analyses of variance and estimates of quadratic components showed that non-additive gene effects were more important in the expression of NN and PFW, whereas additive gene effect was predominant for NDW and MNW. A close association was observed between high number of nodules and GCA. Generally, crosses involving parents of different gene pools yielded hybrids with high positive estimates of SCA for all assessed traits. The genotypes of Andean origin WAF 15 and Mineiro Precoce are the most promising parents for breeding programs to increase NN and NDW in common beans. This revised version was published online in July 2006 with corrections to the Cover Date.     

Natural selection for grain yield in dry bean populations bred by the bulk method

Three dry bean harvests are possible in some regions of Brazil that differ significantly in temperature, rainfall and day length conditions. Thus in breeding programs, generation advance using the bulk method can be carried out in these three periods. It is questionable whether under conditions such as these the action of natural selection would contribute to an increased frequency of individuals considered superior by breeders. The present study assessed six segregating populations, for up to 17 successive generations to check the effects of natural selection during inbreeding. Six populations were generated from a partial diallel: one group consisting of two early maturity cultivars, ESAL 686 and Manteigão Fosco was crossed to a second group of three cultivars with medium maturity, Carioca MG, Milionario and Ouro. The six populations plus the five parents were assessed in experiments using a randomized complete block design, in three locations: Lavras, where in breeding started from the F₂ generation; Lambari and Patos de Minas, from the F₃ generation. A linear regression equation was fitted to the parents and hybrids mean data in each location, considering grain yield as the dependent variable (y) and generations (F₂ = 1, F₃ = 2, etc.) as the independent variable. Genetic progress was estimated from the differences between the linear regression coefficients of the hybrids (b_i)and the mean of the b coefficient of their respective parents (b_j). The (b_i-b_j) were positive in all cases, showing that natural selection acted in all the segregating populations and contributed to an average increase in grain yield of 2.5% per generation over the mean of the parents.     

Development of STS markers and QTL validation for common bacterial blight resistance in common bean

Common bacterial blight (CBB) of common bean ( Phaseolus vulgaris L.), is one of the major diseases that decrease yield and quality. A major quantitative trait locus (QTL) for CBB resistance from line XAN 159 was transferred into two bean lines, HR45 and HR67. Previous studies identified that two markers are linked to this QTL but the chromosome location was not consistent. To identify more tightly linked markers and to verify the chromosome location, 65 additional markers were mapped using 81 recombinant inbred lines (RILs) derived from a cross HR67 × OAC95-4. The QTL was mapped to a 13 cM region on chromosome 1 and defined by eight molecular markers that explained 25–52% of the phenotypic variation. Six tightly linked amplified fragment length polymorphism markers (0.6–9.7 cM from the QTL peak) were converted into seven sequence tagged site markers, three of which were mapped to this QTL. Five tightly linked markers were used to screen 907 F₂ plants derived from a cross HR45 × 'OAC Rex' and four of them were linked to each other within 4.2 cM. These markers may be useful in marker-assisted selection and map-based cloning of this major QTL.     

Genetic progress after four cycles of recurrent selection for yield and grain traits in common bean

The objective of this study was to evaluate the genetic progress after four cycles of recurrent selection in common bean. The base segregating population was obtained from 10 parents, and derived the S_0:1 and S_0:2 families that were evaluated. The S_0:3 families with higher grain yield and grain color, like the standard carioca were selected, and were intercrossed to generate the population of the following cycle. This process was repeated for four cycles. The best families were evaluated in each cycle by many generations and locations, and the five best lines of each cycle were identified. The 20 lines thus obtained were evaluated in two growing seasons, sown in July and November 2002. The grain yield (kg/ha) and grain type (scale of scores) were evaluated. Genetic progress was confirmed for both traits. The mean annual gain with selection for the grain type was 10.5% and 5.7% for grain yield, with no evidence of variability reduction in the population. These results show that recurrent selection is a good alternative for improving common bean quantitative traits.     

Gene action controlling yield and yield‐related traits among tef (Eragrostis tef [Zucc.] Trotter) populations under drought‐stressed and nonstressed conditions

This study was aimed to determine gene action for grain yield and yield‐related traits of newly developed tef populations under drought‐stressed and nonstressed conditions to improve drought tolerance. Ten crosses, along with the parents, were evaluated in the F₂ generation under drought‐stressed conditions at Hastebo and Adigdad sites in 2015 and Dura site in 2016 and under nonstressed conditions at Dura site in 2016. Additive gene action predominantly controlled the inheritance of the grain yield and majority of the yield‐related traits under drought‐stressed and nonstressed conditions. Under both test conditions, the genotypes DZ‐Cr‐387 and 9415 were the best general combiners for increased grain yield and morphological traits. Conversely, genotype 222076 was the best general combiner for reduced maturity period only. The selected parents are novel genetic materials for tef breeding programmes to improve grain yield and morphological traits with reduced days to maturity for drought tolerance breeding. The family of the cross DZ‐Cr‐387 × 222076 was selected for high grain yield and early maturity in both the drought‐stressed and nonstressed environments.     

Genetic analysis of yield and fruit traits in cantaloupe cultivars

The purpose of this research was to evaluate the combining ability of six local Iranian and one imported cantaloupe cultivar. Heritability of traits was estimated using a half‐diallel mating design. Seven parents and their crosses were evaluated in 2013 and 2014. The greatest general combining ability (GCA) for yield and fruit number was for “Rish‐baba” (0.53 kg/plant and 0.3, respectively). The cultivar “Ananasi” had the highest GCA for fruit weight and soluble solids content (SSC) (0.088 kg and 1.4, respectively). “Ananasi” presented the highest GCA values for fruit firmness, chlorophyll a and b and carotenoid content, as well as the highest total chlorophyll content. The cross Garmak × Rish‐baba showed the highest specific combining ability (SCA) for yield with heterosis value of 99%. High heritability estimates for SSC (0.52), flesh thickness (0.61) and concentration of chlorophyll a (0.7) were obtained. Although there were significant SCAs for yield, the parents are suggested to be improved prior to hybrid development. The parent “Ananasi” appears to be a suitable donor in breeding programmes.     

A geographical approach to identify phosphorus-efficient genotypes among landraces and wild ancestors of common bean

Cultivars of common bean (Phaseolus vulgaris L.) capable of yielding well at low levels of native or added phosphorus (P) are highly desirable in many tropical production systems. The objective of the present study was to identify geographical regions which might be sources of such genotypes. A total of 364 landraces, cultivars and wild genotypes, drawn from a broad geographic range, were divided on the basis of growth habit into four field trials, each comprising two levels of P, stressed and unstressed, on an infertile Andosol in Popayan, Colombia. The regression relationship between grain yield per plant in the presence and in the absence of stress was determined, and each genotype's deviation from this relationship was used as a measure of P-efficiency. There was highly significant variation in efficiency among genotypes in all growth habits, and in climbing beans there were consistent regional differences, superior genotypes being identified with greater frequency among those from Bolivia, West Mexico and South Mexico-West Guatemala. The latter region was promising for prostrate bush genotypes also. Wild beans in general performed relatively poorly; it appears that P-efficiency traits in P. vulgaris have been acquired during or after domestication. These results confirm that genetic differences in P-efficiency exist among common bean genotypes and suggest that these are related to geographic origin. Furthermore, the use of a representative sample of germplasm can help to identify segments of the gene bank that are especially promising as sources of desirable traits. This revised version was published online in July 2006 with corrections to the Cover Date.