Does soil ergosterol concentration provide a reliable estimate of soil fungal biomass?

Our aim was to determine if soil ergosterol concentration provides a quantitative estimate of the soil fungal biomass concentration, as is usually assumed. This was done by comparing soil ergosterol measurements with soil fungal biomass (fungal biomass C) concentrations estimated by microscopic measurements and by the selective inhibition technique linked to substrate-induced respiration (SIR). The measurements were compared in a silty-clay loam soil given a range of previous treatments designed to increase or decrease the soil fungal biomass and so also to change the soil ergosterol concentration. The treatments used were ryegrass amendment, to increase the total and fungal biomass, and CHCl₃-fumigation and the addition of the biocides, captan, bronopol and dinoseb, to decrease both ergosterol and fungal biomass C concentrations. The mineralization of ergosterol following addition to sand innoculated with soil extract, and to a sandy loam soil, was also determined. The added ergosterol was little, if at all, degraded following addition to either sand or the unfumigated or fumigated soil during a 10 d aerobic incubation. Similarly, pesticide addition did not significantly change soil ergosterol concentrations yet the soil fungal biomass C concentration decreased significantly. Thus, the ratio: (soil ergosterol concentration/soil fungal biomass C concentration) was much higher in the pesticide-treated soils than the control soil. Following ryegrass amendment, soil ergosterol concentration increased from about 6-12 μg⁻¹ soil within 5 d and then decreased gradually to about 7 μg g⁻¹ soil by 20 d incubation. Changes in fungal biomass C (measured by direct microscopy) closely mirrored changes in soil ergosterol over this period. However, when the amended soil was fumigated and then incubated for a further 5 d, the initial ergosterol concentration declined from 7 to 5 μg g⁻¹ soil by 20 d incubation (a decline of about 0.4). The comparable decline in fungal biomass C was about eight-fold. Thus the ratio of ergosterol to fungal biomass C increased from 0.005 to about 0.01. There was a significant correlation (r>0.84, P<0.001) between soil ergosterol concentration and fungal biomass measured by either SIR or microscopy. However, three data points played a vital role in the correlation. When these points were excluded the relationship was very poor (r<0.4). Our results therefore suggest that substantial amounts of ergosterol may exist, other than in living cells, for considerable periods, with little, if any mineralization. Thus, these results indicate that ergosterol and fungal biomass C concentrations are not always closely correlated, due to the slow metabolism of ergosterol in recently dead fugal biomass and/or the existence of exocellular ergosterol in soil.     

不同利用方式下红壤微生物生物量及代谢功能多样性的变化

研究了不同农林利用方式下红壤微生物生物量和代谢功能多样性等土壤质量指标的变化.结果表明:不同利用方式对土壤质量各指标造成了显著的影响;稻田的微生物生物量碳、氮最高,林地和草地微生物生物量次之,旱地的微生物生物量碳、氮最低(分别是稻田利用方式的4.3% 和 13.7%);稻田的微生物代谢功能多样性最高,旱地、林地和草地的细菌代谢功能多样性较低,旱地的真菌代谢功能多样性最低;微生物生物量和代谢功能多样性可以作为反映土壤质量变化的早期敏感的指标,用来衡量管理措施的改变对土壤质量造成的影响.     

Changes in 15N abundance and amounts of biologically active soil nitrogen

 Estimation of the capacity of soils to supply N for crop growth requires estimates of the complex interactions among organic and inorganic N components as a function of soil properties. Identification and measurement of active soil N forms could help to quantify estimates of N supply to crops. Isotopic dilution during incubation of soils with added ¹⁵NH₄ ⁺ compounds could identify active N components. Dilution of ¹⁵N in KCl extracts of mineral and total N, non-exchangeable NH4₄ ⁺, and N in K₂SO₄ extracts of fumigated and non-fumigated soil was measured during 7-week incubation. Samples from four soils varying in clay content from 60 to 710 g kg^–1 were used. A constant level of ¹⁵N enrichment within KCl and K₂SO₄ extracted components was found at the end of the incubation period. Total N, microbial biomass C and non-exchangeable NH₄ ⁺ contents of the soils were positively related to the clay contents. The mineralized N was positively related to the silt plus clay contents. The active soil N (ASN) contained 28–36% mineral N, 29–44% microbial biomass N, 0.3–5% non-exchangeable NH₄ ⁺ with approximately one third of the ASN unidentified. Assuming that absolute amounts of active N are related to N availability, increasing clay content was related to increased N reserve for crop production but a slower turnover. Received: 7 July 1998     

宁南山区不同土地利用方式土壤酶活性特征研究

试验研究不同土地利用方式土壤酶活性特征结果表明,天然草地表层土壤酶活性较高,灌木林地和人工草地次之,果园和农地较低;20~40cm土层果园和农地土壤酶活性稍高;天然草地和灌木林地对土壤酶活性改良效果显著,而果园和农地则较差;土壤蔗糖酶活性在剖面上变化明显,脲酶和碱性磷酸酶活性变化趋势大多一致,过氧化氢酶活性在不同土地利用类型和剖面层次上均无明显差异。土壤蔗糖酶、脲酶和碱性磷酸酶活性互呈极显著正相关,且均与速效氮及有机质呈极显著正相关。土壤酶活性可作为较理想的土壤肥力指标。     

Slow turnover and production of fungal hyphae during a Californian dry season

We used minirhizotrons to examine the production and turnover of fungal hyphae in situ during the dry season in a Californian grassland. Hyphae were produced relatively slowly throughout the season at rates that did not vary significantly over time, indicating that a portion of the fungal community was active even when soils were very dry. In addition, fungi displayed relatively long residence times, with half of the hyphae remaining in the soil for at least 145 days. Together, these results suggest that a contingent of active fungi may be capable of performing nutrient transformations when plants are otherwise dormant, while relatively long-lasting hyphae may immobilize nutrients for several months before turning over.     

Ergosterol and microbial biomass relationship in soil

Ergosterol and microbial biomass C were measured in 26 arable, 16 grassland and 30 forest soils. The ergosterol content ranged from 0.75 to 12.94 g g^-1 soil. The geometric mean ergosterol content of grassland and forest soils was around 5.5 g g^-1, that of the arable soils 2.14 g g^-1. The ergosterol was significantly correlated with biomass C in the entire group of soils, but not in the subgroups of grassland and forest soils. The geometric mean of the ergosterol: microbial biomass C ratio was 6.0 mg g^-1, increasing in the order grassland (5.1), arable land (5.4) and woodland (7.2). The ergosterol:microbial biomass C ratio had a strong negative relationship with the decreasing cation exchange capacity and soil pH, indicating that the fungal part of the total microbial biomass in soils increased when the buffer capacity decreased. The average ergosterol concentration calculated from literature data was 5.1 mg g^-1 fungal dry weight. Assuming that fungi contain 46% C, the conversion factor from micrograms ergosterol to micrograms fungal biomass C is 90. For soil samples, neither saponification of the extract nor the more effective direct saponification during extraction seems to be really necessary.     

Mycorrhizal function on soil aggregate stability in root zone and root-free hyphae zone of trifoliate orange

Arbuscular mycorrhizal fungi (AMF) influence soil aggregate stability through their hyphae, roots, and glomalin-related soil protein (GRSP); however, the individual effect of these factors is difficult to distinguish. Pots separated by a 37-μm mesh bag buried in the middle of each pot was used to establish root zone (root + hyphae) and hyphae zone (roots free), where the Poncirus trifoliata seedlings were colonized by Funneliformis mosseae or Paraglomus occultum in root zone. AMF inoculation significantly increased shoot, root, and plant’s total biomass, soil organic carbon, GRSP fractions, 2–4 and 1–2 mm size water-stable aggregates, and mean weight diameter (MWD) in root or hyphae zone. Within root zone, root colonization and biomass presented stronger relationship with MWD than GRSP fractions. While, within hyphae zone, total of GRSP fraction was significantly correlated with MWD. The study, suggested further that root biomass and colonization were the main mechanisms in root zone for improving aggregate stability, whereas total of GRSP fractions was of paramount importance in hyphae zone. Mycorrhizal effect on aggregate stability was observed to be contrastingly different between root zone and hyphae zone.     

Impact of fire on fungal abundance and microbial efficiency in C assimilation and mineralisation in a Mediterranean maquis soil

The present study investigates the impact of fire (low and high severity) on soil fungal abundance and microbial efficiency in C assimilation and mineralisation in a Mediterranean maquis area of Southern Italy over 2 years after fire. In burned and control soils total and active fungal mycelium, microbial biomass C, percentage of microbial biomass C present as fungal C, metabolic quotient (qCO₂) and coefficient of endogenous mineralisation (CEM) were assayed together with several chemical properties of soil (i.e. pH and contents of organic C, total and mineral N, available K, Mg, Mn and water). Fire significantly decreased the fungal mycelium, whereas it stimulated microbial growth probably through the enhancement of bacterial growth because of the increase in organic C and nutrient contents in burned plots. This shift in microbial community composition might explain the observed reduction in soil microbial efficiency of C assimilation (high qCO₂) and the increase in C mineralisation rate (CEM) in the first 84 days after fire. Therefore, fire might increase CO₂ input to the atmosphere not only during combustion phase but also in the post-fire period.     

Using lipid analysis and hyphal length to quantify AM and saprotrophic fungal abundance along a soil chronosequence

We evaluate the use of signature fatty acids and direct hyphal counts as tools to detect and quantify arbuscular mycorrhizal (AM) and saprotrophic fungal (SF) biomass in three Hawaiian soils along a natural soil fertility gradient. Phospholipids16:1ω5c and 18:2ω6,9c were used as an index of AM and saprotrophic fungal biomass, respectively. Both phospholipid analysis and hyphal length indicated that the biomass of AMF was greatest at the highest fertility site, and lowest where phosphorus limits plant growth. Saprotrophic fungal biomass did not vary. Hyphal length counts appeared to under-estimate SF abundance, while the phospholipid AMF:SF ratio was in line with expectations. This study indicates that phospholipids may be a valuable and reliable tool for studying the abundance, distribution, and interactions between AM and saprotrophic fungi in soil.     

Surface soil hydraulic properties in four soil series under different land uses and their temporal changes

The concepts of “genoform” and “phenoform” distinguish the genetically-defined soil series and the variation of soil properties resulted from different land uses and management practices. With the repeated field measurements over time, we attempted to understand the difference of soil hydraulic properties among different land uses for a given soil series, and their temporal dynamics. Four soil series (Glenelg, Hagerstown, Joanna, and Morrison) in Pennsylvania with contrasting textures, structures, and parent materials were investigated. Within each soil series, four common land uses (woodland, cropland, pasture, and urban) were examined. At each site of soil series–land use combination, field-saturated and near-saturated hydraulic conductivities, K(ψ), were measured at the soil surface using standard tension infiltrometers at water supply potentials (ψ) of − 0.12, − .06, − 0.03, − 0.02, − 0.01, and 0 m. Surface infiltration measurements were repeated at each site in May and October from 2004 to 2006. The analysis of variance indicated that the measurement time (May or October) had the greatest impact on all measured hydraulic conductivities (p < 0.001), followed by the land use (p < 0.05 for K_ψ = 0 and K_{ψ = − 0.06}) and soil series (p < 0.06 for K_{ψ = − 0.01} to K_{ψ = − 0.03}). The interactions between the time and land use and between the soil series and land use were statistically significant for K_ψ = 0 and K_{ψ = − 0.01.} When separated by the measurement time, land use showed greater impacts in October than in May, while soil series had greater impacts in May than in October. Among the four land uses, woodland showed less obvious temporal change compared to the other three land uses because of less human-induced impacts and more consistent ground cover. Other three land uses generally showed a higher hydraulic conductivity in May than in October due to the drier initial soil moisture condition and related management practices in the spring that gave rise to more significant macropore flow. The results suggested that the initial soil moisture is an important variable that drives the temporal variation of the surface soil hydraulic properties.     

Effects of land-use and management practices on soil ergosterol content in andosols

Ergosterol is a fungus-specific chemical component which has been extensively used to assess the fungal biomass and activity in soils. In the present study, we investigated the soil ergosterol content in a group of Japanese soils differing in management. In addition, the relationships among the soil ergosterol content (SEC), microbial biomass C (MBC), and microbial biomass N (MBN) were also tested in different seasons. Our results showed that the SEC was lower in intensively cropped soils than in pasture and forest soils. In general, no consistent trend was observed for SEC of pasture soils within the same sampling period. However, SEC tended to decrease in most of the soils in autumn, which may be ascribed to the effect of seasonal changes on fungal biomass. No strong evidence could be obtained for the effect of different fertilizers on SEC, which can be due to different management variables and interspecific variations between fungal communities at different soil sites. Our results did not suggest the presence of a noticeable correlation between SEC and MBC or MBN. The ratio of SEC in total biomass C was lower (0.20 and 0.11% in spring and autumn, respectively) compared with the values reported.     

川西平原土壤微生物生物量碳氮磷含量特征及其影响因素分析

本文通过区域调查采样和统计分析,探讨了川西平原土壤微生物生物量碳（MBC）、土壤微生物生物量氮（MBN）和土壤微生物生物量磷（MBP）含量特征及其对气候、海拔、母质和土地利用等因素的响应,揭示了其关键影响因素,以期为川西平原地区土壤质量管理提供参考。结果表明,不同土壤类型的MBC、MBN和MBP含量表现为冲积土显著高于水稻土、潮土和黄壤（P<0.05）,潮土MBC/MBN显著高于水稻土。气候和海拔的影响为：MBC、MBN和MBP含量随着≥ 0℃积温、≥ 10℃积温、年均温和年均降水量的增加呈指数减少,而随干燥度和海拔增加呈线性增加。不同成土母质中,MBC、MBN和MBP含量均为灰色冲积物显著高于老冲积物。不同土地利用方式下,三者含量为草地显著高于水田和旱地,水田、旱地和林地差异不显著。皮尔森相关分析和冗余分析表明,MBC和MBN均与≥ 0℃积温、年均温呈极显著负相关（P<0.01）,与海拔呈极显著正相关关系,MBP与母质呈现极显著负相关关系。逐步回归分析表明,MBC主要受年均温、干燥度、年均降水量和母质的影响;MBN主要受海拔、干燥度和年均降水量的综合影响;MBP主要受母质、年均温、≥ 10℃积温和年均降水量的调控。因此,川西平原土壤MBC、MBN、MBP能灵敏地反映不同采样点气候的变化,可为该区气候变化下土壤碳、氮、磷的响应预测提供参考。     

Water-drop stability of PVA-treated natural soil aggregates from different land uses

Soil erodibility is a function of land use as it affects the stability of soil aggregates. The use of soil conditioners like polyvinyl alcohol (PVA) may help in reducing the soil erodibility, but it is important to economize the use of PVA. A study was carried out to evaluate the interactive effects of land use and PVA concentration on the water-drop stability of natural soil aggregates collected from eroded, forest, agricultural and grass lands. The water-drop stability of these aggregates was monitored using single raindrop simulator. The water-drop stability was lowest in eroded soils, followed by soils from agriculture, forest and grass lands. The smaller aggregates were more stable than the bigger ones. The water-drop stability of aggregates of different sizes and from different lands increased with the application of polyvinyl alcohol (PVA). The mean water-drop stability increased with the application of PVA at the rate of 0.05% by 40% in 2–5 and 5–10 mm aggregates. Increasing the PVA concentration to 0.1 and 0.2% increased water-drop stability value by 71–73% and 87–88%, respectively. The PVA application at the rate of 0.1% could increase the water-drop stability of soils under eroded land equivalent to that of the untreated grassland soils.     

Correlations between pesticide transformation rate and microbial respiration activity in soil of different ecosystems

Cecil sandy loam soils (ultisol) from forest (coniferous and deciduous), pasture, and arable ecosystems were sampled (0-10 cm) in the vicinity of Athens, Georgia, USA. Soil from each site was subdivided into three portions, consisting of untreated soil (control) as well as live and sterile samples treated with the fungicide metalaxyl and the herbicide propachlor at 10 mg kg^-1 soil. Pesticide transformation rate, basal respiration (basal) and substrate-induced respiration (SIR) rates, and microbial metabolic quotient (qCO₂) were measured for the initial application of metalaxyl [methyl-N-(2,6-dimethylphenyl)-N-(metoxyacetyl)-DL-alaninate] or propachlor (2-chloro-N-isopropyl-acetanilide) at 22°C and 60% water holding capacity. Positive correlations were found for the following: metalaxyl transformation rate constant (K_met) and basal (r=0.73); K_met and SIR (r=0.83); propachlor transformation rate constant (K_pr) and basal (r=0.89); and K_pr and SIR (r=0.91). Regression analysis of pesticide transformation rate and soil respiration activity, coupled with specific soil properties (pH, C_org, and clay content), revealed a positive correlation between K and SIR for C_org (r=0.88 and 0.98, for metalaxyl and propachlor, respectively). qCO₂s were not significantly different (P=0.05) in propachlor-amended and pesticide-free soils. Metalaxyl amendment resulted in a change in the ecophysiological status of the soil microbial community as expressed by qCO₂. The qCO₂ values in metalaxyl-amended soils were significantly greater (P=0.05) in pine forest (by 25%) and arable and pasture (by 20%) soils compared to unamended soils. Differences in qCO₂ values may represent the magnitude of pesticide-induced disturbance. The duration of this disturbance was greater in the pine forest soil (48 days) compared to arable and pasture soils (21 and 15 days, respectively).     

The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil

The cell content of 12 bacterial phospholipid fatty acids (PLFA) was determined in bacteria extracted from soil by homogenization/centrifugation. The bacteria were enumerated using acridine orange direct counts. An average of 1.40×10^-17 mol bacterial PLFA cell^-1 was found in bacteria extracted from 15 soils covering a wide range of pH and organic matter contents. With this factor, the bacterial biomass based on PLFA analyses of whole soil samples was calculated as 1.0–4.8 mg bacterial C g^-1 soil C. The corresponding range based on microscopical counts was 0.3–3.0 mg bacterial C g^-1 soil C. The recovery of bacteria from the soils using homogenization/centrifugation was 2.6–16% (mean 8.7%) measured by PLFA analysis, and 12–61% (mean 26%) measured as microscopical counts. The soil content of the PLFA 18:26 was correlated with the ergosterol content (r=0.92), which supports the use of this PLFA as an indicator of fungal biomass. The ratio 18:26 to bacterial PLFA is therefore suggested as an index of the fungal:bacterial biomass ratio in soil. An advantage with the method based on PLFA analyses is that the same technique and even the same sample is used to determine both fungi and bacteria. The fungal:bacterial biomass ratio calculated in this way was positively correlated with the organic matter content of the soils (r=0.94).     

Effects of different land use on soil chemical properties, decomposition rate and earthworm communities in tropical Mexico

The effects of land use on soil chemical properties were evaluated, and earthworm communities and the decomposition rate of three typical land use systems in tropical Mexico, namely banana plantations (B), agroforestry systems (AF) and a successional forest (S) were compared.The study was carried out from November 2005 to April 2006. A completely randomized sampling design was established in six sites (B1, B2, AF1, AF2, S1 and S2). Soil properties and chemical characteristics (texture, pH, organic carbon (Corg), nutrients, and available Zn and Mn), earthworm communities and the decomposition of Bravaisia integerrima and Musa acuminata litter were analyzed over a period of 8 weeks.All soils were loamy clays with a medium to high content of nutrients. Three principal clusters were generated with the soil chemical properties: a first cluster for forest soils with high Corg and Ntot and low available Zn content, a second cluster for AF1 and a third cluster for B1, B2 and A2.The decomposition of B. integerrima litter was significantly faster (half-life time: 1.8 (AF2)–3.1 (B1) weeks) than that of M. acuminata (4.1 (AF2)–5.8 (S2) weeks). However, the decomposition rates did not differ significantly among the different sites.The greatest earthworm diversities were observed in AF2 and B1. Native species were dominant in the forest soils, whereas exotic species dominated in AF and in the banana plantations. The abundance and biomass of certain earthworm species were correlated to physical and chemical soil parameters. However, litter decomposition rates were not correlated with any of the soil physical–chemical parameters.While none of the land use systems studied led to a decrease in nutrient status, earthworm biodiversity and abundance, or in litter decomposition rate, they did result in a change in earthworm species composition.     

Fungal abundance and distribution as influenced by clearing and land use in a vertic soil of Argentina

The influence of native vegetation clearing and different further soil managements on fungal propagule population diversity was studied in the present work. In each of the 3 years (1998, 1999, and 2000), soil samples were collected at the depth of 0–7.5 cm from sites under native vegetation (V0); naturalized prairie, cleared in 1982 (P16); conventional tillage, cleared in 1972 (T26); and direct drilling, cleared in 1958 (D40). Fungal population size and relative abundance of fungal genera were studied by plate counts and further identification of isolates on potato dextrose agar. The undisturbed site and the other sites with increasing time elapsed since native vegetation clearing and different management history showed a distinctive distribution of fungal genera. There were significant differences (p<0.05) among the sites in the abundance of fungal genera analyzed in all the 3 years. Principal component analysis based on relative fungal genus abundance differentiated the sites with 75% variance explained by the first and second components. Diversity and abundance of isolated fungal genera were increased as density of Penicillium spp. decreased, suggesting a competitive effect of this fungal genus. The largest diversity was found in the site under no-till management. The different distribution and relative abundance of the fungal genera studied seemed to be influenced strongly by the management and the presence of surface residue in the no-tilled site.     

添加秸秆碳源对土壤微生物生物量和原生动物丰富度的影响

为了研究引入秸秆碳源对根结线虫(Meloidogyne spp.)病害严重土壤中微生物生物量和原生动物的影响, 以番茄为供试作物, 设置4个梯度的小麦秸秆添加量[CK(0 g·kg^-1), 1N(2.08 g·kg^-1)、2N(4.16 g·kg^-1)和4N(8.32 g·kg^-1)], 研究不同种植时间(6个月和4个月)下土壤微生物生物量碳、氮和原生动物丰度的变化。研究结果表明: 添加秸秆对微生物生物量碳、氮和原生动物丰富度有明显促进作用, 添加的秸秆量越多, 这种促进作用越明显。不同秸秆添加量处理中, 微生物生物量碳、氮和原生动物丰度为: 4N>2N>1N>CK。秸秆对原生动物的群落结构也有显著影响, 在各处理中, 鞭毛虫和肉足虫占有绝大比例, 分别占总丰度的29.44%和66.19%, 纤毛虫仅占4.37%。在相同添加秸秆量条件下, 土壤原生动物丰度随种植时间的延长而提高, 而微生物生物量碳、氮量随种植时间的延长而降低。而在种植时间相同条件下, 随着秸秆量的增加土壤微生物生物量碳、氮量和微生物生物量碳氮比和原生动物总丰度相应增加。     

Responses of soil organic matter and greenhouse gas fluxes to soil management and land use changes in a humid temperate region of southern Europe

We studied the effects of soil management and changes of land use on soils of three adjacent plots of cropland, pasture and oak (Quercus robur) forest. The pasture and the forest were established in part of the cropland, respectively, 20 and 40 yr before the study began. Soil organic matter (SOM) dynamics, water-filled pore space (WFPS), soil temperature, inorganic N and microbial C, as well as fluxes of CO₂, CH₄ and N₂O were measured in the plots over 25 months. The transformation of the cropland to mowed pasture slightly increased the soil organic and microbial C contents, whereas afforestation significantly increased these variables. The cropland and pasture soils showed low CH₄ uptake rates (<1 kg C ha⁻¹ yr⁻¹) and, coinciding with WFPS values >70%, episodes of CH₄ emission, which could be favoured by soil compaction. In the forest site, possibly because of the changes in soil structure and microbial activity, the soil always acted as a sink for CH₄ (4.7 kg C ha⁻¹ yr⁻¹). The N₂O releases at the cropland and pasture sites (2.7 and 4.8 kg N₂O-N ha⁻¹ yr⁻¹) were, respectively, 3 and 6 times higher than at the forest site (0.8 kg N₂O-N ha⁻¹ yr⁻¹). The highest N₂O emissions in the cultivated soils were related to fertilisation and slurry application, and always occurred when the WFPS >60%. These results show that the changes in soil properties as a consequence of the transformation of cropfield to intensive grassland do not imply substantial changes in SOM or in the dynamics of CH₄ and N₂O. On the contrary, afforestation resulted in increases in SOM content and CH₄ uptake, as well as decreases in N₂O emissions.