Selecting and ranking areas for conservation of Aegla (Crustacea: Decapoda: Anomura) in southern South America integrating biogeography,phylogeny and assessments of extinction risk

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Experimental test of oyster restoration within eelgrass

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Advances and challenges in marine conservation in Chile: A regional and global comparison

1. Despite significant progress made in Chile, and globally, in establishing marine protected areas (MPAs), the actual contribution to marine biodiversity conservation needs to be revised, to focus on representativeness and the diversity of tools alongside effective implementation, management, and enforcement.
2. This study makes progress in this direction, describing the most recent advances in marine conservation in Chile and analysing the contribution of the different conservation instruments as well as the distribution of designated areas across ecoregions. Furthermore, it examines the potential contribution of alternative area-based instruments to balance ocean protection. The advances observed in Chile were compared among four South American countries and five leading countries in ocean conservation, analysing protection levels in coastal areas, continental exclusive economic zones, and overseas territories.
3. Data on MPA boundaries and attributes were sourced from the World Database on Protected Areas and complemented the official information on MPAs and territorial user rights for fisheries and for indigenous people in South America.
4. The current level of protection in Chile is among the highest in the world in area coverage and in the proportion of the continental exclusive economic zone assigned to fully protected areas. However, it exhibits the strongest imbalances in the distribution of designated MPAs between coastal and oceanic waters, in comparison with the leading countries and also within South America (Perú, Chile, Argentina, and Uruguay), and among ecoregions.
5. The patterns observed suggest that Chile has advanced, but concentrated, conservation efforts in low-threat, remote ecoregions. There is an urgent need to progress towards high-threat ecoregions, which implies balancing the needs of nature and people. The distribution of ancillary conservation instruments can help double the level of protection in threatened coastal areas, filling gaps in marine conservation and creating an opportunity to progress and diversify conservation strategies.

     

Extinction risk and conservation of marine bony shorefishes of the Greater Caribbean and Gulf of Mexico

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Status and the potential for extinction of the largetooth sawfish Pristis pristis in the Atlantic Ocean

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Strengthening the synergies among global biodiversity targets to reconcile conservation and socio‐economic demands

1. Most of the world's nations adopted the 20 Aichi global biodiversity targets to be met by 2020, including the protection of at least 10% of their coastal and marine areas (Target 11) and the avoidance of extinction of threatened species (Target 12). However, reconciling these biodiversity targets with socio‐economic demands remains a great dilemma for implementing conservation policies.
2. In this paper, Aichi Targets 11 and 12 were simultaneously addressed using Brazil's exclusive economic zone as an example. Priority areas for expanding the current system of marine protected areas within the country's eight marine ecoregions were identified with data on threatened vertebrates under different scenarios. Additionally, the potential effects of major socio‐economic activities (small? and large‐scale fishing, seabed mining, and oil and gas exploration) on the representation of conservation features in proposed marine protected areas were explored.
3. Areas selected for expanding marine protected areas solely based on biodiversity data were different (spatial overlap from 62% to 93%) from areas prioritized when socio‐economic features were incorporated into the analysis. The addition of socio‐economic data in the prioritization process substantially decreased opportunity costs and potential conservation conflicts, at the cost of reducing significantly (up to 31%) the coverage of conservation features. Large? and small‐scale fisheries act in most of the exclusive economic zone and are the major constraints for protecting high‐priority areas.
4. Nevertheless, there is some spatial mismatch between areas of special relevance for conservation and socio‐economic activities, suggesting an opportunity for reconciling the achievement of biodiversity targets and development goals within the intricate Brazilian seascape by 2020 and beyond.

     

Recent invasion of the Japanese oyster drill along the French Atlantic coast: identification of specific molecular markers that differentiate Japanese,Ocinebrellus inornatus,and European,Ocenebra erinacea,oyster drills

The direct amplification of length polymorphism technique (DALP) has been used to distinguish species-specific banding patterns in two marine gastropod oyster drills Ocenebra erinacea (Linnaeus, 1758) and Ocinebrellus inornatus (Récluz, 1851). Ocenebra erinacea is the European oyster drill, common along all European coasts. Ocinebrellus inornatus, the Japanese oyster drill, was recorded in oyster growing areas of the Marennes-Oléron Bay (SW France) for the first time in 1995. This new biological invasion could lead to an increase, which must be evaluated, in the predation risk for cultivated species i.e. oysters and blue mussels, and for littoral fishing resources along the French Atlantic coasts. As a result, since specific identification of early life stages of both species (egg capsules and juveniles) was previously found to be both difficult and unsure using only morphological criteria, four Ocenebra erinacea and two Ocinebrellus inornatus specific molecular markers were identified and sequenced. These markers will facilitate the assessment of respective ecological impacts (reproductive patterns, abundance and spatial distribution of juveniles), resulting from the exotic species versus the native species and will allow us to analyse with certainty demographic profiles of the two oyster drill populations.     

Genetic differentiation among Atlantic island populations of the brown spiny lobster Panulirus echinatus (Decapoda: Palinuridae)

1. Declines in Panulirus echinatus Smith, 1869 populations along their wide distribution in the Atlantic Ocean have spurred efforts to improve their fisheries management and conservation. In this study, the genetic structure of these populations is reported for the first time.
2. In a survey of 18 species‐specific polymorphic microsatellite markers, 152 individuals were genotyped from five Atlantic oceanic islands, covering most of the insular distribution range of the species. The analyses revealed that P. echinatus is genetically partitioned into two stocks in the Atlantic Ocean. A highly significant genetic structure was observed between north‐east and south‐west Atlantic populations based on fixation index, discriminant analysis of principal components, and structure and barrier analysis.
3. We suggest that the Equatorial Circulation System represents a biophysical barrier that effectively limits migration among Atlantic subtropical gyre systems, as has been described for other species. Other physical and ecological barriers, such as the Mid‐Atlantic Ridge itself, the distance between the eastern and western sides of the Atlantic (Mid‐Atlantic Barrier) and water mass differences, as well as other biological aspects, may also influence larval dispersal and modulate the insular distribution of this species.
4. The results show the existence of two distinct genetic stocks of P. echinatus and have implications for fisheries management in the Atlantic Ocean, including their independent management according to their individual status. The Cabo Verde and the Canarian populations (north‐east Atlantic) showed the lowest level of genetic variability in comparison with the south‐western populations. A combination of factors that have occurred or are occurring in the Canary Islands, such as overfishing and volcanic eruptions, is likely to explain the reduced abundance of this lobster species in the area.

     

Migratory connectivity and local site fidelity in red knots on the southern Pacific coast of South America

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Potential distribution and population trends of the smalltail shark Carcharhinus porosus inferred from species distribution models and historical catch data

1. Updated distribution ranges are crucial for conservation status assessments. Comprehensive analyses combining published literature and available data on historical catches and species distribution models (SDMs) are effective tools that could improve the prediction of more realistic scenarios for some species, especially those with limited information available and facing multiple threats.
2. The present study aimed at generating an updated distribution for the smalltail shark Carcharhinus porosus, one of the most threatened and understudied shark species of the western Atlantic Ocean. Estimates of the key areas for this species conservation based on the SDMs, and trends in catch probabilities throughout its distribution range are provided.
3. Four algorithms (BIOCLIM, Domain, Mahalanobis, and Maximum Entropy) were used to model the distribution of C. porosus and calculate its habitat suitability based on marine environmental variables. To assess historical catch probability trends, we built a generalized linear model from published and grey literature data. This analysis was used to estimate catch probability as an indication of population trends.
4. SDMs suggest that the northern coast of South America (NCSA) harbours the most suitable habitats for C. porosus in the world, which was expected given its historically high catch rate in this region. In addition, there was a continuously declining catch probability trend starting in the 1970s. However, the decline was smaller for the NCSA as compared with the Gulf of Mexico and the eastern South America coast.
5. Results indicate that the NCSA should be considered the currently most important area in the world for this species conservation. Furthermore, the lack of data throughout Central and South American marine regions hampers the evaluation of extinction risk throughout its updated distribution. Thus, research in these areas is urgently required for a more comprehensive conservation status assessment.

     

Insights into population genetics,connectivity and demographic history of the longnosed skate Dipturus oxyrinchus (Linnaeus, 1758) in the western Mediterranean Sea

1. Genetic information is crucial for the conservation of Dipturus oxyrinchus (Linnaeus, 1758), a threatened large skate with declining populations over most of its geographical range. The main aim of the present study was to investigate the genetic structure, connectivity and demographic history of the longnosed skate in Sardinia (western Mediterranean Sea).
2. Patterns of population structure were assessed in 175 specimens from six sampling sites. Variation in two mitochondrial genes (cytochrome c oxidase subunit I (COI) and control region) highlighted high genetic diversity and low but significant genetic differentiation among sites, which clustered into three groups corresponding to the north‐west, north‐east and south Sardinian coasts.
3. The observed genetic structuring could presumably depend on a combination of past geological events, contemporary restrictions to dispersal and biological characteristics of the species (e.g. site‐fidelity, no pelagic larval stage, limited dispersal of juveniles and/or adults).
4. Demographic analyses showed signs of past population expansion, but substantial current stability of Sardinian populations. From a conservation perspective, these results are encouraging, and indicate that Sardinian populations are still large and stable, and seem not to have suffered negative side‐effects from the ever‐growing fishing pressure in the region.
5. The occurrence of genetic structuring strongly supported the close monitoring of populations to identify any erosion of their gene pool, and high genetic variability of the Sardinian D. oxyrinchus populations could thus represent priority populations for conservation purposes, providing potential sources for recolonization in cases of local extinctions in other areas of the distribution range of the species.
6. When the sequences from Sardinia were compared with those available from other areas, the data seem to exclude the possibility that the Atlantic and Mediterranean host totally isolated populations or even different species, as recently suggested. However, additional markers and a larger sampling sites are needed to confirm these findings.

     

Low genetic variation and isolation of northern peripheral populations of a red seaweed (Grateloupia lanceola)

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Historical DNA as a tool to genetically characterize the Mediterranean sand tiger shark (Carcharias taurus,Lamniformes: Odontaspididae): A species probably disappeared from this basin

1. The sand tiger shark (Carcharias taurus) is a coastal species distributed in temperate and sub‐tropical waters, classified as ‘Vulnerable’ at global level and ‘Critically endangered’ in eastern Australia, south‐western Atlantic Ocean, and Mediterranean Sea. Six populations (north‐western Atlantic, Brazil, South Africa, Japan, eastern Australia, and western Australia) with low genetic diversity and limited gene flow were identified worldwide, but genetic information for many other geographic areas are still missing. Specifically, this species is listed in several reports as part of the Mediterranean fauna, even if there has been a lack of catches and sightings in recent years in this basin. To clarify the origin of C. taurus individuals caught in the past in the Mediterranean Sea, historical samples were genetically analysed.
2. Nine samples with certain Mediterranean origin were collected from different European museums. DNA was extracted and ~600 bp of the mitochondrial DNA control region were amplified using eight overlapping species‐specific primer pairs. Sequences obtained were aligned with all the haplotypes globally known so far.
3. Genetic analysis revealed the misidentification of one museum specimen. Among the remaining Mediterranean historical samples, three different haplotypes were recovered. Two of them previously observed only in South Africa and one described in both South African and Brazilian populations.
4. Results suggest a genetic relationship between Mediterranean sand tiger sharks and those from the western Indian Ocean. According to previous studies, we hypothesized that, during the Pleistocene, the cold Benguela upwelling barrier was temporarily reduced allowing the passage of C. taurus individuals from the Indian to Atlantic Ocean. After the restoration of this phylogeographic barrier some individuals were trapped in the Atlantic Ocean and probably migrated northward colonizing the western African coasts and the Mediterranean Sea.

     

Genetic connectivity of the South American fur seal (Arctocephalus australis) across Atlantic and Pacific oceans revealed by mitochondrial genes

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On sightings of (vagrant?) monk seals,Monachus monachus,in the Mediterranean Basin and their importance for the conservation of the species

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Human impacts on the endangered fan mussel,Pinna nobilis

1. Pinna nobilis is a sensitive and vulnerable species and is hence considered a good indicator of anthropogenic pressures on marine ecosystems.
2. This study provides novel data on the density and distribution of endangered P. nobilis on the Turkish coasts. Threats to the status of P. nobilis, including by‐catch and illegal collection, were assessed, as was the general awareness of people about the endangered status of fan mussels.
3. The data sources consisted of direct observations from diving surveys and the local ecological knowledge (LEK) of fishers and scuba‐divers.
4. Results demonstrated that the density of P. nobilis significantly changed with environmental parameters, such as depth, and among different sampling areas. The number of damaged individuals was lowest in the areas that were distant from human influences such as ports and tourist beaches. The density estimations of P. nobilis across a wide geographic area around the Turkish coasts revealed that the density of fan mussels was highest around western coasts in comparison with southern coasts.
5. Fishers and divers indicated that the population of this species has decreased during the last decade. The main causes of this decline were suggested to be the impacts of fishing gear, poaching, pollution, and boat anchoring. The highest volume of by‐catch was estimated to be taken by trawls. In general, the knowledge and local awareness of the conservation importance and status of fan mussels was poor.
6. The study has identified those areas where fan mussels occur at a high density, and hence may indicate areas for possible conservation protection status. Second, areas exposed to the illegal harvesting of fan mussels were highlighted. Societal concern would benefit from educational activities to raise awareness of the ecological importance and conservation needs for fan mussels in Turkey.

     

Population structure,genetic diversity,and colonization history of the eastern pondmussel,Sagittunio nasutus,in the Great Lakes drainage

1. The eastern pondmussel, Sagittunio nasutus (Bivalvia: Unionida), has declined in abundance and distribution in eastern North America over the last few decades. The declines are predominantly the result of infestation by invasive dreissenid mussels and changes in habitat. The species is now considered imperilled across large portions of its distribution, especially in the Laurentian Great Lakes region.
2. The genetic diversity and structure of the remnant populations in the Great Lakes region were assessed using 10 newly developed microsatellite DNA loci for S. nasutus. Understanding the remaining populations can inform future management projects and determine whether the remnant populations have experienced a genetic bottleneck or a founder effect. We hope that this will inform the conservation of other species in regions founded by, and isolated from, a more genetically diverse source population or with disjointed geographical distributions.
3. Focusing on the Great Lakes region, samples (n = 428) from 62 collection sites in 28 water bodies were collected. Across the locations sampled for S. nasutus 11 genetic populations were identified, with significant genetic differentiation among them. The genetic structure of the species was assessed, with genetic similarities among populations compared and with geographical routes of colonization and gene flow evaluated.
4. Initial colonization from the Atlantic coast into Lake Erie and Lake Ontario is evident, followed by colonization events into nearby inland rivers and lakes. Analyses found evidence of inbreeding in all but one population and evidence of past genetic bottlenecks or strong founder effects in all but four populations. This study deepens our understanding of the genetic past and present of this imperilled species, providing conservation suggestions for the future management of the species.

     

Population genetic divergence of bonnethead sharks Sphyrna tiburo in the western North Atlantic: Implications for conservation

1. Sharks are a priority for conservation because numerous species, including small-sized coastal species, are being heavily exploited by commercial and recreational fisheries. Understanding the genetic population structure of sharks is key to effective management, maximizing their evolutionary potential in a rapidly changing environment and preventing population declines.
2. Limited dispersal is an important factor promoting population divergence for several coastal shark species. The genetic variation in 14 microsatellite loci and 21,006 single nucleotide polymorphisms genotyped using restriction-site-associated DNA sequencing was analysed to assess the genetic structure of the bonnethead shark, Sphyrna tiburo, in the western North Atlantic.
3. Genetic differences were identified among three well-defined regions: the western Florida coast, the south-eastern US Atlantic coast, and the southern Gulf of Mexico. Results support previous studies based on mitochondrial DNA sequences in defining differences among these regions and suggest limitations of bonnethead sharks in routinely performing long-distance migrations.
4. The limited connectivity among regions explains the pattern of genetic divergence but also reported divergence at the species/subspecies level. These genetically discrete bonnethead populations have independent evolutionary histories that may include local adaptations to specific areas.
5. Bonnethead sharks are currently managed as two stocks in the USA owing to recent genetic, tagging, and life history studies; however, no stock assessments or management plans exist for Mexico. These results not only serve to reinforce US management strategies and provide critical data about the extent of gene flow and sex dispersal among populations, but also begin the process of effective management in the waters of Mexico to ensure the long-term productivity and resilience of this species. With an absence of gene flow between populations from US waters and the southern Gulf of Mexico, there is a need for management plans based upon independent biological and population dynamics data since limited or no opportunities for populations to interchange individuals may occur to re-establish population viability.

     

A new map of the tiger shark (Galeocerdo cuvier) genetic population structure in the western Atlantic Ocean: Hypothesis of an equatorial convergence centre

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Comprehensive review of the records of the biota of the Indian Seas and introduction of non‐indigenous species

• 1. Comparison of the pre‐1960 faunal survey data for the Indian Seas with that for the post‐1960 period showed that 205 non‐indigenous taxa were introduced in the post‐1960 period; shipping activity is considered a plausible major vector for many of these introductions.
• 2. Of the non‐indigenous taxa, 21% were fish, followed by Polychaeta (<11%), Algae (10%), Crustacea (10%), Mollusca (10%), Ciliata (8%), Fungi (7%), Ascidians (6%) and minor invertebrates (17%).
• 3. An analysis of the data suggests a correspondence between the shipping routes between India and various regions. There were 75 species common to the Indian Seas and the coastal seas of China and Japan, 63 to the Indo‐Malaysian region, 42 to the Mediterranean, 40 and 34 to western and eastern Atlantic respectively, and 41 to Australia and New Zealand. A further 33 species were common to the Caribbean region, 32 to the eastern Pacific, 14 and 24 to the west and east coasts of Africa respectively, 18 to the Baltic, 15 to the middle Arabian Gulf and Red Sea, and 10 to the Brazilian coast.
• 4. The Indo‐Malaysian region can be identified as a centre of xenodiversity for biota from Southeast Asia, China, Japan, Philippines and Australian regions.
• 5. Of the introduced species, the bivalve Mytilopsis sallei and the serpulid Ficopomatus enigmaticus have become pests in the Indian Seas, consistent with the Williamson and Fitter ‘tens rule’. Included amongst the biota with economic impact are nine fouling and six wood‐destroying organisms.
• 6. Novel occurrences of the human pathogenic vibrios, e.g. Vibrio parahaemolyticus, non‐01 Vibrio cholerae, Vibrio vulnificus and Vibrio mimicus and the harmful algal bloom species Alexandrium spp. and Gymnodinium nagasakiense in the Indian coastal waters could be attributed to ballast water introductions.
• 7. Introductions of alien biota could pose a threat to the highly productive tropical coastal waters, estuaries and mariculture sites and could cause economic impacts and ecological surprises.
• 8. In addition to strict enforcement of a national quarantine policy on ballast water discharges, long‐term multidisciplinary research on ballast water invaders is crucial to enhance our understanding of the biodiversity and functioning of the ecosystem.

Copyright © 2005 John Wiley & Sons, Ltd.