Diel and seasonal changes in nutritional condition of the anadromous twaite shad Alosa fallax fallax (Lacépède, 1803) larvae

Abstract –  In this work we aim to study: (i) the diel and seasonal changes in nutritional condition, herein RNA/DNA ratios, of twaite shad ( Alosa fallax fallax ) larvae and (ii) the influence of environmental and biological covariates on those changes. Samples were collected in the River Mira (Portugal) from February 1998 to July 2000. The RNA/DNA ratios were significantly lower than average during dawn and dusk hours. This pattern can be attributed to: the absence of better-fit specimens escaping the net; a nightly increase in the RNA content in response to circadian rhythm; and/or nucleic acids of prey items remaining in the gut of larvae during daylight. Thus, the time of day is important when examining RNA/DNA ratios of twaite shad. Generalised additive model of seasonal data showed that water temperature, freshwater pulses and/or turbidity largely contribute to create adequate environments. These might enhance the nutritional condition of twaite shad larvae during the period that they remain in the upper reaches of River Mira.     

Novel insights into the marine phase and river fidelity of anadromous twaite shad Alosa fallax in the UK and Ireland

1. Most research on anadromous fishes has been invested in their freshwater life‐phases, resulting in a relatively sparse understanding of their spatial ecology during marine life‐phases. However, understanding the marine dispersal of anadromous fishes is essential to identify threats and to implement conservation measures that fully encompass their lifecycle.
2. The twaite shad Alosa fallax is an anadromous fish increasingly imperilled across its range due to pollution, harvesting, and impediments to freshwater migration, but little is known about its distribution and movements during its marine life‐phase. Here, the application of acoustic telemetry provided novel insights into the coastal dispersal of twaite shad in the UK and Ireland during 2018–2019, and the freshwater entry of individuals during the 2019 spawning season.
3. Of 73 twaite shad acoustic‐tagged during their upstream migration in the River Severn in May 2018, 58 emigrated from the river. Twelve were subsequently detected 200 km to the south‐west at the Taw–Torridge Estuary between July 2018 and April 2019, where estuarine movements up to 5.8 km inland occurred in summer, winter, and spring. One was subsequently detected in the Munster Blackwater Estuary (Ireland) and then in the River Severn, indicating a minimum movement distance of 950 km. Thirty‐four (59%) of the emigrating individuals from 2018 re‐entered fresh water in the rivers Severn (n = 33) and Wye (n = 2) in April and May 2019.
4. These results suggest year‐round use of estuarine and nearshore habitats by at least a subset of the twaite shad population during their marine phase, providing evidence of potential range overlap between populations that spawn in different areas in the UK and Ireland, which may be facilitated by substantial dispersal. The results also highlight the potential of telemetry for estimating freshwater and marine mortality, and the benefits of sharing detection data across networks.

     

Modeling environmental,temporal and spatial effects on twaite shad (Alosa fallax) by‐catches in the central Mediterranean Sea

Modeling the relationships between environmental factors and the distribution at sea of species of conservation interest can be useful in predicting their occurrence from a local to a regional scale. This information is essential for planning management and conservation initiatives. In this study, generalized additive models (GAMs) were applied to investigate the influence of environmental, temporal and spatial variables on the catch rates of the twaite shad Alosa fallax (Lacepède) by the pelagic trawl fishery in the north‐central Adriatic Sea. Presence/absence and abundance [catch per unit effort (CPUE)] data between 2006 and 2012 were separately modeled, and the two models were then validated using a test data set. The most important factor influencing the presence and abundance of adult twaite shads was the spatial predictor (latitude × longitude). Two areas of major shads aggregations were observed, the most important of which being located near the estuaries of three main river systems of northern Italy. The twaite shad presence was also significantly affected by season, the largest and lowest occurrences being observed in autumn and spring, respectively. Among the environmental variables tested, only sea surface temperature was included in both models. Alosa fallax showed a wide thermal tolerance (6–27°C) with preference for temperature around 23°C. The model developed from the abundance data showed a moderate predictive power, whereas the accuracy of the presence/absence model was rather low. Some conclusions on the ecological requirements of A. fallax at sea arising from this study are useful to orient future monitoring and research programs and to develop effective conservation actions.     

Estuarine phase during seaward migration for allis shad Alosa alosa and twaite shad Alosa fallax future spawners

Abstract –  The timing and duration of the estuarine phase during seaward migration were addressed for allis shad and twaite shad, closely related sympatric species in the Gironde system. Otolith Sr:Ca and daily growth increments were used to retrospectively estimate the age at entrance in the estuary, the time spent in estuary and the age at seaward exit from returning adults. The two species exhibited different seaward migration strategies: allis shad entered the estuary at an older age than twaite shad (88 days vs. 59 days), stayed shorter in the estuary (11 days vs. 17 days) and exited to the sea at an older age (99 days vs. 77 days). In the Gironde system, the estuarine phase is very short and occurs within a particular time 'window' for the juveniles that will become future spawners. In this context, it might be suggested that the estuarine phase is a bottleneck for these sympatric shad populations.     

Stocking of native Mediterranean brown trout (Salmo trutta) into French tributaries of Lake Geneva does not contribute to lake-migratory spawners

Abstract –  We studied the contribution of stocking with Mediterranean autochthonous brown trout ( Salmo trutta ) to the lake-migratory spawners in French tributaries of Lake Geneva. This singular lake system is inhabited by both the resident and the migratory life-history form, and by trout of Atlantic and Mediterranean origins. Using two discriminatory microsatellite loci between the Atlantic and Mediterranean alleles, we compared the genetic composition of the migratory Atlantic populations of the four main tributaries before (1999; N  = 113) and after (2004, 2005 and 2006; N  = 137) recent introductions of native Mediterranean trout. No significant modification of the genetic composition was detected in all four populations over time and only two individuals were statistically assigned to the Mediterranean strain by the Bayesian method implemented in the structure program. These results suggest a negligible contribution of the stockings with autochthonous Mediterranean trout to the lake-migratory spawners migrating into the four tributaries.     

Assessment of three strategies practiced by fishery managers for restoring native brown trout (Salmo trutta) populations in Northern French Alpine Streams

Abstract – The efficiency of three strategies carried out by fisheries managers to restore native Mediterranean brown trout populations threatened by non‐native Atlantic populations were assessed. The strategies tested were (i) genetic refuge area where stocking is banned, (ii) stocking with Mediterranean fry and (iii) translocation of wild Mediterranean spawners. Using two discriminatory microsatellite loci between Atlantic and Mediterranean alleles, we compared the genetic composition of samples before and after the changes of practices. The three strategies had several detectable effects in the standing populations causing strong temporal changes in departures from Hardy–Weinberg equilibrium and linkage equilibrium between loci and the apparition of new Mediterranean alleles. The significant reductions in the proportions of Atlantic alleles observed over time can mostly be explained by the disappearing of the pure non‐native Atlantic trout after the stopping of hatchery releases. The results, however, also suggest that the active strategies carried out by managers led to intraspecific introgression between both non‐native Atlantic and native Mediterranean strains.     

Historical DNA as a tool to genetically characterize the Mediterranean sand tiger shark (Carcharias taurus,Lamniformes: Odontaspididae): A species probably disappeared from this basin

1. The sand tiger shark (Carcharias taurus) is a coastal species distributed in temperate and sub‐tropical waters, classified as ‘Vulnerable’ at global level and ‘Critically endangered’ in eastern Australia, south‐western Atlantic Ocean, and Mediterranean Sea. Six populations (north‐western Atlantic, Brazil, South Africa, Japan, eastern Australia, and western Australia) with low genetic diversity and limited gene flow were identified worldwide, but genetic information for many other geographic areas are still missing. Specifically, this species is listed in several reports as part of the Mediterranean fauna, even if there has been a lack of catches and sightings in recent years in this basin. To clarify the origin of C. taurus individuals caught in the past in the Mediterranean Sea, historical samples were genetically analysed.
2. Nine samples with certain Mediterranean origin were collected from different European museums. DNA was extracted and ~600 bp of the mitochondrial DNA control region were amplified using eight overlapping species‐specific primer pairs. Sequences obtained were aligned with all the haplotypes globally known so far.
3. Genetic analysis revealed the misidentification of one museum specimen. Among the remaining Mediterranean historical samples, three different haplotypes were recovered. Two of them previously observed only in South Africa and one described in both South African and Brazilian populations.
4. Results suggest a genetic relationship between Mediterranean sand tiger sharks and those from the western Indian Ocean. According to previous studies, we hypothesized that, during the Pleistocene, the cold Benguela upwelling barrier was temporarily reduced allowing the passage of C. taurus individuals from the Indian to Atlantic Ocean. After the restoration of this phylogeographic barrier some individuals were trapped in the Atlantic Ocean and probably migrated northward colonizing the western African coasts and the Mediterranean Sea.

     

美洲鲥的资源变动及修复

美洲鲥在美国渔业史上曾起到重要作用,但从19世纪初期开始,建闸筑坝、水域污染以及人们的过度捕捞,造成美洲鲥种群数量急剧下降,目前,美洲鲥在很多地区已经绝迹。然而,经过人们不断的努力,美洲鲥资源渐渐得到修复,每年在切萨皮克地区举行的鲥鱼节,让人们在庆祝这一自然文化财富的同时加深了对美洲鲥的了解。     

Salinity tolerance in young Allis shad larvae (Alosa alosa L.)

Abstract –  Estuarine migration in Allis shad ( Alosa alosa ) usually does not take place before mid-summer, but exposure to salinity in brackish water may occur earlier as many spawning areas are of necessity located in upper estuarine zones due to the placement of dams. Therefore, Allis shad conservation programmes need to consider the risk of mortality due to the ability of young Allis shad to tolerate salinity. To evaluate larval mortality due to the inability of larvae to withstand salinity during early ontogeny, we exposed larvae of different ages (from few days old to 27 days old) to salinities ranging from 0 to 30 g·l⁻¹. Results indicate that direct seawater exposure induces high mortality in young larvae whatever the ontogenetic stage. However, young larvae can easily deal with upper estuary salinity conditions.     

Environmental DNA reveals the temporal and spatial extent of spawning migrations of European shad in a highly fragmented river basin

1. Artificial barriers on lowland rivers impede the spawning migrations of anadromous fishes, preventing access to historical spawning areas. In the cryptic European shads Alosa alosa and Alosa fallax (‘shad’ hereafter), this has resulted in population declines across their range. Conservation programmes aim to facilitate the passage of migrators over these barriers and so require baseline information on the spatial and temporal extent of current migrations.
2. Here, a shad-specific environmental DNA (eDNA) assay was used to quantify the spatial extent of shad spawning migrations in the River Severn basin, western England. This basin is characterized by the presence of multiple barriers in the lower catchment. In 2017, the eDNA assay was piloted in the River Teme, an important shad spawning tributary, and then applied in 2018 and 2019 across the lower Severn basin.
3. In all years, shad DNA was detected between mid-May and mid-June, with the maximum spatial extent of shad distribution being in early June when shad eDNA was detected upstream of weirs that were generally considered as impassable. In 2018, this included the detection of shad above the most upstream weir on the main River Severn that required individual fish to have passed six weirs.
4. Although barriers inhibit the spawning migrations of shad, this eDNA assay showed that some highly vagile individuals might be able to ascend these barriers and migrate considerable distances upstream. This suggests that efforts to increase the permeability of these barriers could result in relatively high numbers of migrating shad reaching upstream spawning areas. These results demonstrate that this eDNA assay could also be used across their range, to further quantify the spatial extent of their spawning, including in highly fragmented rivers and those where shad are believed to spawn only occasionally and are rarely observed.

     

First report of a cystic malformation on the upper jaw of hatchery‐reared allis shad Alosa alosa

The anadromous allis shad Alosa alosa has suffered dramatic population declines throughout Europe and is currently considered as endangered throughout its entire distribution range. In order to reestablish allis shad in the River Rhine, which formerly housed one of the largest and most important populations, an EU‐LIFE Project ‘The re‐introduction of allis shad in the Rhine system’ was started in 2007. In course of the LIFE+ Projects, allis shad larvae bred from genitor fish of the Gironde–Garonne–Dordogne population in France were reared in a pilot ex situ stock plant pilot facility in Aßlar, Germany. At an age of 1–2 months, about 100% of these fish developed approximately 0.5‐ to 0.8‐cm large, fluid‐filled, transparent cysts in conjunction with the upper jaw. The performed microbiological, virological, parasitological and histological examinations did not detect any infectious agents. Possible causative agents are discussed with regard to environmental factors and the nutrition of larvae. In conclusion, the observed malformations are considered a sign for a severe health problem and therefore a risk for the successful breeding of allis shad in aquaculture.     

Lactococcus lactis,causative agent of an endocarditis valvularis and parietalis thromboticans in the allis shad,Alosa alosa (L.)

Since the 1940s, the anadromous allis shad, Alosa alosa (L.), has suffered population declines throughout its distribution range in Europe. In context of EU‐LIFE projects for the reintroduction of the allis shad in the Rhine system, a comprehensive study was started in 2012 to investigate infectious diseases occurring in allis shad. In course of the study, 217 mature and young‐of‐the‐year allis shad originating from the wild population from the Gironde–Garonne–Dordogne system (GGD‐system) and the Rhine system as well as 38 allis shad from the breeding population were examined by use of bacteriological and histological methods. In 2012 and 2014, an endocarditis valvularis thromboticans caused by a coccoid bacterium was detected in 16% and 25% of mature allis shad originating from the GGD‐system. Results of microbiologic examinations, including biochemical characteristics, matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOF MS) and 16S rRNA gene sequence analysis, revealed Lactococcus lactis as causative agent of this infection. This is the first report of an endocarditis valvularis and parietalis thromboticans caused by Lactococcus lactis in fish. Possible sources of infection as well as the impact for the reintroduction programme are discussed.     

美国鲥鱼的麻醉运输试验

以美国的 Sedate及 MS-222、丁香酚等三种不同的药物作麻醉剂，分别配制成不同的梯度质量分数，采用充氧密闭药液浸泡法，进行美国鲥鱼的活体运输试验。结果表明，采用质量分数为 200mg/L的美国 Sedate，质量分数为 20~25mg/L的 MS-222以及质量分数为 12mg/L的丁香酚作麻醉剂，运输时间 3 h，美国鲥鱼的运输成活率均可达到 100%。     

Microsatellite markers reveal population structure in gilthead sea bream Sparus auratus from the Atlantic Ocean and Mediterranean Sea

ABSTRACT:   This study was carried out to investigate the genetic variability and the population genetics of Sparus auratus. In fact, despite its importance in Mediterranean fisheries and aquaculture, very little it is known concerning its population structure. Samples of wild gilthead sea bream were collected in seven different localities along the Mediterranean and Atlantic coasts and were genetically characterized by means of microsatellite markers. Genotyping at four microsatellite loci revealed high polymorphism (7–38 alleles/locus) and expected heterozygosities, which ranged from 0.80 to 0.85. A slight but significant population structure was found ( F _ST = 0.010). In fact, at least three populations of gilthead sea bream within the Western Mediterranean Sea were identified (Sardinian Sea, Sardinian Channel and Central Tyrrhenian Sea), which are also genetically differentiated from those of the Atlantic Ocean and the Adriatic Sea.     

Predator response to releases of American shad larvae in the Susquehanna River basin

Abstract— Predation on American shad ( Alosa sapidissima ) larvae within the first two hours of release was examined from 1989 to 1992 on 31 occasions at stocking sites in the Susquehanna River basin. Twenty-two fish species consumed shad larvae; the dominant predators were spotfin shiner ( Cyprinella spiloptera ), mimic shiner ( Notropis volucellus ) and juvenile smallmouth bass ( Micropterus dolomieu ). The number of shad larvae found in predator stomachs ranged from 0 to 900. Mortality of shad larvae at the stocking site was usually less than 2%. The greatest mortality (9.6%) occurred at the highest stocking level (1.5 million larvae). Highly variable predation rates and release levels of shad insufficient to achieve predator satiation hindered the ability to determine a specific type of functional response of predators. Predator numbers increased with stocking density, indicating short-term aggregation at the release site. Because of practical problems associated with releasing the large numbers of larvae that would be required to satiate predators, routine stocking at these levels is probably unreasonable. Releases of 400,000 to 700,000 larvae may reduce predation by offsetting depensatory mechanisms that operate on small releases and the effects of increased predation due to predator aggregation on large releases. Night stocking may reduce predation on larval shad at the release site.     

From salmon to shad: Shifting sources of marine‐derived nutrients in the Columbia River Basin

Like Pacific salmon (Oncorhynchus spp.), nonnative American shad (Alosa sapidissima) have the potential to convey large quantities of nutrients between the Pacific Ocean and freshwater spawning areas in the Columbia River Basin (CRB). American shad are now the most numerous anadromous fish in the CRB, yet the magnitude of the resulting nutrient flux owing to the shift from salmon to shad is unknown. Nutrient flux models revealed that American shad conveyed over 15,000 kg of nitrogen (N) and 3,000 kg of phosphorus (P) annually to John Day Reservoir, the largest mainstem reservoir in the lower Columbia River. Shad were net importers of N, with juveniles and postspawners exporting just 31% of the N imported by adults. Shad were usually net importers of P, with juveniles and postspawners exporting 46% of the P imported by adults on average. American shad contributed <0.2% of the total annual P load into John Day Reservoir, but during June when most adult shad are migrating into John Day Reservoir, they contributed as much as 2.0% of the P load. Nutrient inputs by American shad were similar to current but far less than historical inputs of Pacific salmon owing to their smaller size. Given the relatively high background P levels and low retention times in lower Columbia River reservoirs, it is unlikely that shad marine‐derived nutrients affect nutrient balances or food web productivity through autotrophic pathways. However, a better understanding of shad spawning aggregations in the CRB is needed.     

AFLP and microsatellites as genetic tags to identify cultured gilthead seabream escapees: data from a simulated floating cage breaking event

Genetic discrimination using DNA fingerprinting is rapidly developing for cultured stock and wild fish populations. Microsatellites and AFLPs are being widely used in aquaculture to assign fish or processed fish products, to their claimed origin, paternity or strain. In the present study, 147 AFLP and 4 microsatellite markers were used as genetic tags in gilthead seabream, Sparus auratus. Specimens from two different hatchery broodstocks (one of Atlantic and one of Mediterranean origin) and wild fishes from a natural population were fingerprinted. Putative offspring from these broodstocks were computer-generated, and the confidence in the parentage assignment of their genetic profiles to the hatchery broodstock assessed. The virtual offspring were then mixed with specimens from a natural population to simulate an accidental escape from a floating cage. The risk of false paternity inclusion was evaluated to test the ability to identify either Atlantic or Mediterranean hatchery offspring among wild fish. The method proved to be reliable, and could therefore be used to forecast the impact of fish farm escapees.     

Whistle variability of the Mediterranean short beak common dolphin

1. The short-beaked common dolphin is a highly vocal species, with a wide distribution in all oceans, including the Mediterranean and the Black Seas. In the Mediterranean Sea, the short-beaked common dolphin inhabits both pelagic and neritic waters.
2. Osteological collections and the literature show that short-beaked common dolphins were widespread and abundant in much of the Mediterranean Sea until the late 1960s. During recent decades the species has declined in the whole basin, and, in 2003, it was listed as Endangered in the IUCN Red List.
3. Genetic studies strongly suggest that the Mediterranean and the Eastern North Atlantic populations are isolated from each other. Genetic differentiation within the Mediterranean Sea, between the Eastern Mediterranean (Ionian Sea) and Western Mediterranean populations, is also reported.
4. The aim of this study was to investigate the geographical variation in the characteristics of whistles of free-ranging short-beaked common dolphins living in the Mediterranean Sea, and to evaluate if whistle acoustic structure is the result of adaptation to local environment characteristics or of a possible genetic diversification.
5. Recordings were collected from 1994 to 2012 throughout the basin, employing multiple platforms. Twenty-six independent acoustic detections were made, and 704 whistles were extracted and considered for statistical analysis.
6. Whistle analysis enabled the identification of distinct geographical units of short-beaked common dolphin within the Mediterranean Sea. Genetic isolation is probably the major cause of the geographic variance of the Mediterranean short-beaked common dolphin whistle structure, which may reflect some evolutionary adaptations to particular ecological conditions or may be the by-product of morphological evolution.
7. The results of the present study show that intra-Mediterranean variability of whistle structure reflects the path of genetic studies, highlighting the possible use of acoustic data in combination with other sources of data (genetic, morphological, etc.) to identify geographic areas where discrete management units occur.

     

Insights into population genetics,connectivity and demographic history of the longnosed skate Dipturus oxyrinchus (Linnaeus, 1758) in the western Mediterranean Sea

1. Genetic information is crucial for the conservation of Dipturus oxyrinchus (Linnaeus, 1758), a threatened large skate with declining populations over most of its geographical range. The main aim of the present study was to investigate the genetic structure, connectivity and demographic history of the longnosed skate in Sardinia (western Mediterranean Sea).
2. Patterns of population structure were assessed in 175 specimens from six sampling sites. Variation in two mitochondrial genes (cytochrome c oxidase subunit I (COI) and control region) highlighted high genetic diversity and low but significant genetic differentiation among sites, which clustered into three groups corresponding to the north‐west, north‐east and south Sardinian coasts.
3. The observed genetic structuring could presumably depend on a combination of past geological events, contemporary restrictions to dispersal and biological characteristics of the species (e.g. site‐fidelity, no pelagic larval stage, limited dispersal of juveniles and/or adults).
4. Demographic analyses showed signs of past population expansion, but substantial current stability of Sardinian populations. From a conservation perspective, these results are encouraging, and indicate that Sardinian populations are still large and stable, and seem not to have suffered negative side‐effects from the ever‐growing fishing pressure in the region.
5. The occurrence of genetic structuring strongly supported the close monitoring of populations to identify any erosion of their gene pool, and high genetic variability of the Sardinian D. oxyrinchus populations could thus represent priority populations for conservation purposes, providing potential sources for recolonization in cases of local extinctions in other areas of the distribution range of the species.
6. When the sequences from Sardinia were compared with those available from other areas, the data seem to exclude the possibility that the Atlantic and Mediterranean host totally isolated populations or even different species, as recently suggested. However, additional markers and a larger sampling sites are needed to confirm these findings.

     

Digestion of larval American shad by cyprinids

Cyprinids have pharyngeal teeth for grinding food before swallowing and a continuous gut with no discrete stomach. This digestive tract structure, as well as the feeding behavior traits shown by cyprinids, makes it difficult to identify and measure the amount of food consumed by these fishes. The relations among quantity of food in cyprinid gut, time after feeding and predator size were described by log-linear multiple regression. The number of intact American shad (Alosa sapidissima (Wilson)) larvae eaten in laboratory experiments was estimated by extrapolating the regression for the amount of food in the gut over time for predators of various size. The numbers of larval American shad in guts of fish captured in the Juniata River, Pennsylvania, were not significantly different from those estimated with the equations derived from laboratory data. In view of their abundance in rivers and their potential digestion rate for larval fish, cyprinids can be expected to have a marked influence on reducing the numbers of larval American shad.