Soil feedback effects to the foredune grass Ammophila arenaria by endoparasitic root-feeding nematodes and whole soil communities

In coastal foredunes, the grass Ammophila arenaria develops a soil community that contributes to die-back and replacement by later successional plant species. Root-feeding nematodes and pathogenic soil microorganisms are involved in this negative feedback. Regular burial by wind-blown beach sand results in vigorous growth of A. arenaria, probably because of enabling a temporary escape from negative soil feedback. Here, we examine the role of root-feeding nematodes as compared to the whole soil community in causing negative feedback to A. arenaria. We performed a 3-year sand burial experiment in the field and every year we determined the feedback of different soil communities to plant growth in growth chamber bioassays.In the field, we established A. arenaria in tubes with beach sand, added three endoparasitic root-feeding nematode species (Meloidogyne maritima, Heterodera arenaria and Pratylenchus penetrans) or root zone soil to the plants, and created series of ceased and continued sand burial. During three subsequent years, plant biomass was measured and numbers of nematodes were counted. Every year, bioassays were performed with the field soils and biomass of seed-grown A. arenaria plants was measured to determine the strength of feedback of the established soil communities to the plant.In the field, addition of root zone soil had a negative effect on biomass of buried plants. In the bioassays, addition of root zone soil also reduced the biomass of newly planted seedlings, however, only in the case when the field plants had not been buried with beach sand. Addition of the three endoparasitic root-feeding nematodes did not influence plant biomass in the field and in the bioassays. Our results strongly suggest that the negative feedback to A. arenaria is not due to the combination of the three endoparasitic nematodes, but to other components in the soil community, or their interactions with the nematodes.     

Interactions between root-feeding nematodes depend on plant species identity

Root-feeding nematodes play an important role in structuring the composition of natural plant communities. Little is known about the role of intra- and interspecific interactions in determining the abundance of root-feeding nematodes in natural ecosystems. We examined interactions between two ectoparasitic root-feeding nematodes on two plant species: a good host plant for both nematode species and a good host for only one of the nematodes. We tested the hypothesis that root herbivore competitiveness depends on host suitability and related the experimental results to field data. In a greenhouse, we added different densities of the nematodes Tylenchorhynchus microphasmis and Tylenchorhynchus ventralis to Ammophila arenaria (the good host for both) and Carex arenaria (a good host for T. microphasmis only). Addition of T. ventralis did not significantly affect multiplication of T. microphasmis on both plant species. In contrast, on A. arenaria, T. ventralis experienced interspecific competition. However, on C. arenaria, T. microphasmis facilitated multiplication of T. ventralis. To explain this effect, we studied systemic plant-mediated effects in a split-root experiment. Nematode addition to one root compartment did not significantly influence nematode multiplication in the other root compartment, irrespective of nematode species identity. Therefore, the observed nematode interactions were not related to induced changes in the roots. In a two-choice experiment we tested whether host suitability was related to root attractiveness. Both nematode species were attracted to seedlings of A. arenaria, but not to C. arenaria. The low multiplication of T. ventralis on C. arenaria could be related to poor attraction to the roots. However, the poor attraction of T. microphasmis cannot be related to poor host suitability. Adding T. ventralis reduced shoot biomass of A. arenaria more than T. microphasmis did, whereas for C. arenaria the effect was the reverse. The interaction of the two nematodes on A. arenaria and C. arenaria shoot biomass was insignificant. However, the effect on root biomass of A. arenaria was interactive; adding T. ventralis to plants with high inoculation densities of T. microphasmis further decreased root biomass. Adding T. microphasmis further decreased root biomass of plants inoculated with low levels of T. ventralis. Depending on host plant identity, interactions between root-feeding nematodes may lead to competition or facilitation. Our results suggest that facilitation by T. microphasmis contributes to persistence of T. ventralis on C. arenaria. Thus, the population dynamics of root-feeding nematodes is influenced both by host plant identity and the presence of other root-feeding nematodes.     

Exotic plant influences soil nematode communities through litter input

The impact of exotic plant invasions on soil communities and nutrient cycling processes has received an increasing attention in recent years. To test whether the exotic plant invasions affect nematode communities through altering litter quality, we compared mass loss and nematode colonization during the stem litter decomposition of invasive Spartina alterniflora and native Phragmites australis in salt marshes of the Yangtze River estuary, China. Plastic drinking straws were synchronously used as controls. The addition of plant residues was found stimulating the growth of nematodes, particularly bacterial feeders on day 16 after burial. A top-down control of bacterivous nematodes by carnivores existed in nematode succession during the litter decomposition. With higher nitrogen content and lower C:N ratio, stem litter of the invasive S. alterniflora decayed faster and supported more abundant nematodes than the native P. australis. The greater nematode abundance in S. alterniflora was mainly due to two dominant genera of bacterial nematodes, namely Diplolaimelloides and Diplolaimella. Lower values of maturity index and structure index in S. alterniflora than in P. australis litter indicate that a more degraded food web condition resulted from the faster litter decay. A considerable difference in nematode community structures between two litter types only occurred in a certain period of the decomposition (from 8 to 32 days after burial), suggesting that the changes in faunal community structure are time dependent. In summary, this study confirmed the hypothesis that the invasion of S. alterniflora stimulates the growth of bacterial nematodes by producing higher quality of litter than the native P. australis. The results obtained here suggest that the invasion of exotic plant is likely to alter ecosystem functions indirectly through exerting its effect on soil decomposer communities such as nematodes.     

Multiple species-specific controls of root-feeding nematodes in natural soils

One of the major limitations to enhance sustainability of crop production systems is the inability to control root-feeding nematodes without using chemical biocides. In soils under wild vegetation, however, root-feeding nematodes affect plant performance and plant community composition varying from substantially to insignificantly. Previous studies in natural ecosystems have already shown that mutualistic symbionts, such as arbuscular mycorrhizal fungi and endophytes, may influence plant exposure to root-feeding nematodes. In order to learn more from natural systems, we examined nematode control in the root zone of a wild coastal foredune grass by microorganisms, other nematodes and microarthropods. We cultured all eight root-feeding nematode species that occur in the root zone of marram grass (Ammophila arenaria) in coastal foredunes of the Netherlands. Then, in an indoor growth experiment we exposed each nematode species to the potential natural antagonists collected from the same dune soil. Most of the eight dominant root-feeding nematode species could be controlled to some extent by more than one group of soil organisms added. The effectiveness of control varied among nematode species, which seemed to be controlled in a species-specific way. We conclude that in a natural soil the effectiveness of control by microorganisms, other nematodes or microarthropods varies among root-feeding nematode species. Most are controlled, at least to some extent, by soil microbes. However, some root-feeding nematode species are controlled only by microarthropods. Our results strongly suggest that sustainable agriculture will benefit from using a range of biological control mechanisms when controlling root-feeding nematodes, rather than relying on single control agents. Our suggestion also implies that conserving soil biodiversity is crucial in order to enhance the reliability of biological crop protection against soil-borne pests and diseases.     

Rhizosphere bacterial community composition in natural stands of Carex arenaria (sand sedge) is determined by bulk soil community composition

The relative importance of specific plant properties versus soil characteristics in shaping the bacterial community structure of the rhizosphere is a topic of considerable debate. Here, we report the results of a study on the bacterial composition of the rhizosphere of the wild plant Carex arenaria (sand sedge) growing at 10 natural sites in The Netherlands. The soil properties of the sandy soils at these sites were highly disparate, most notably in pH, chloride and organic matter content. Rhizosphere and bulk soil bacterial communities were examined by culture-independent means, namely, 16S rDNA-directed PCR-DGGE profiling. Large differences were observed between the bacterial communities of the different sites for both bulk and rhizosphere soil. Cluster analysis of bacterial profiles revealed that the rhizosphere community of each site was generally more closely related to the bulk soil community of that site rather than to rhizosphere communities of other sites. Hence, bacterial community structure within the rhizosphere of C. arenaria appeared to be determined to a large extent by the bulk soil community composition. This conclusion was supported by a reciprocal planting experiment, where C. arenaria shoots of different sites yielded highly similar rhizosphere communities when planted in the same soil.     

Shrub-interspace dynamics alter relationships between microbial community composition and belowground ecosystem characteristics

In desert ecosystems, belowground characteristics are influenced chiefly by the formation and persistence of “shrub-islands of fertility” in contrast to barren plant interspaces. If soil microbial communities are exclusively compared between these two biogeochemically distinct soil types, the impact of characteristics altered by shrub species, especially soil C and N, are likely to be overemphasized and overshadow the role of other characteristics in structuring microbial composition. To determine how belowground characteristics influence microbial community composition, and if the relative importance of these characteristics shifts across the landscape (i.e., between and within shrub and interspace soils), changes in microbial communities across a 3000-year cold desert chronosequence were related to 27 belowground characteristics in surface and subsurface soils. When shrub and interspace communities in surface and subsurface soils were combined across the entire chronosequence, communities differed and were primarily influenced by soil C, NO₃⁻ concentrations, bulk density, pH, and root presence. Within shrub soils, microbial communities were shrub species-specific, especially in surface soils, highlighting differences in soil characteristics created by specific shrub species and/or similarity in stresses structuring shrub species and microbial communities alike. Microbial communities in shrub soils were not influenced by soil C, but by NO₃⁻ and NH₄⁺ concentrations, pH, and silt in surface soils; and Cl, P, soil N, and NO₃⁻ concentrations in subsurface soils. Interspace soil communities were distinct across the chronosequence at both depths and were strongly influenced by dune development. Interspace communities were primarily associated with soil stresses (i.e., high B and Cl concentrations), which decreased with dune development. The distribution of Gram-positive bacteria, Actinobacteria, and fungi highlighted community differences between and within shrub and interspace soils, while Gram-negative bacteria were common in all soils across the chronosequence. Of the 27 belowground characteristics investigated, 13 separated shrub from interspace communities, and of those, only five emerged as factors influencing community composition within shrub and interspace soils. As dunes develop across this cold desert chronosequence, microbial community composition was not regulated primarily by soil C, but by N and P availability and soil stresses in shrub soils, and exclusively by soil stresses in interspace soils.     

Host-parasite soil communities and environmental constraints: Modelling of soil functions involved in interactions between plant-parasitic nematodes and Pasteuria penetrans

Nematodes belonging to the genus Meloidogyne are the most ubiquitous and widespread plant-parasitic nematodes. They occur worldwide, are polyphagous and can parasitize most cultivated plants leading to reduced crop yields. They are especially harmful in developing countries because of the lack of suitable and feasible management strategies. Among all the control practices (chemicals, physical techniques, cultural practices, resistance), the use of natural enemies as biological control agents is the most recently developed. Pasteuria penetrans which is an obligate Gram-positive, endospore-forming bacterium, is perhaps the most promising plant-parasitic nematode biocontrol agent. Despite much research conducted on prey-predator interactions (host-parasite specificity, mechanisms of attachment, field efficacy), the influence of the soil environment on host-parasite interactions is poorly understood even when the soil appears to be the key factor. Beyond common studies on the influence of climatic conditions on the attachment of endospores of P. penetrans to nematodes, more knowledge about the systemic interactions between plants, soil water dynamics, soil texture and structure, and other biota on the parasitism of nematodes by P. penetrans would improve their utilization as biological control agents. The aim of this review is to analyze the literature dealing with the influence of the soil on nematode - P. penetrans interactions in order to suggest a helpful conceptual model based on partitioning the Pasteuria population in sub-populations according to their soil habitat (dispersible and non-dispersible aggregates, microporosity, macroporosity), not all of them being available for attachment and infection on nematodes. Such concerns should be taken into account by epidemiologists for improving biological management strategies based on the use of this bacterium.     

Successional trajectories of soil nematode and plant communities in a chronosequence of ex-arable lands

Conversion of arable land into semi-natural grassland or heath land is a common practice for restoring and conserving plant diversity. However, little is known about the effectiveness of land conversion for restoring and conserving taxonomic and functional diversity in the soil. We studied soil nematode community development in a chronosequence of abandoned fields and related this to plant community development. The taxonomic and functional composition of the soil nematode community was analyzed to detect changes in soil food web structure, using semi-natural sites and theoretical plant and soil communities as references.While plant communities clearly developed towards the semi-natural references, there was less direction in succession of nematode taxa. The number of fungal feeding nematodes increased after land abandonment. Numbers of omni-carnivorous nematodes expanded only during the first years, after which there were no substantial changes for the next three decades. Plant communities on the ex-arable fields developed towards the theoretical reference plant associations Galio hercynici-Festucetum ovinae and Genisto anglicae-Callunetum. Nematode communities developed away from a theoretical community indicative of arable land, but there was no clear development towards a theoretical (semi-)natural reference. Our results show that restoration and conservation of plant communities is of limited indicative value for developments belowground: successful restoration of plant diversity does not necessarily imply successful restoration of belowground diversity. Assessing the impact of conservation measures on restoring soil biodiversity requires information on belowground community composition of (semi-)natural areas in order to establish proper references for restoration sites.     

Biodiversity and trophic structure of soil nematode communities are altered following woody plant invasion of grassland

Woody plant encroachment is an important land cover change in dryland ecosystems throughout the world, and frequently alters above and belowground primary productivity, hydrology, and soil microbial biomass and activity. However, there is little known regarding the impact of this geographically widespread vegetation change on the biodiversity and trophic structure of soil fauna. Nematodes represent a major component of the soil microfauna whose community composition and trophic structure could be strongly influenced by the changes in ecosystem structure and function that accompany woody encroachment. Our purpose was to characterize nematode community composition and trophic structure along a grassland to woodland chronosequence in the Rio Grande Plains of southern Texas. Research was conducted at the La Copita Research Area where woody encroachment has been documented previously. Soil cores (0–10 cm) were collected in fall 2006 and spring 2007 from remnant grasslands and woody plant stands ranging in age from 15 to 86 years, and nematodes were extracted by sugar centrifugation. Neither nematode densities (3200–13,800 individuals kg⁻¹ soil) nor family richness (15–19 families 100 g⁻¹ soil) were altered by woody encroachment. However, family evenness decreased dramatically in woody stands >30 years old. This change in evenness corresponded to modifications in the trophic structure of nematode communities following grassland to woodland conversion. Although root biomass was 2–5× greater in wooded areas, root-parasitic nematodes decreased from 40% of all nematodes in grasslands to <10% in the older wooded areas, suggesting the quality (C:N or biochemical defenses) of woody plant root tissue could be limiting root-parasites. In contrast, bacterivores increased from 30% of nematodes in grasslands to 70–80% in older woody patches. This large increase in bacterivores may be a response to the 1.5–2.5× increase in soil microbial biomass (bacteria + fungi) following woody encroachment. Therefore, while energy flow through grassland nematode communities appears to be distributed nearly equally among herbivory, fungivory and bacterivory, the energy flow through nematode communities in wooded areas appears to be based primarily on bacterivory. We speculate that these shifts in nematode community composition and trophic structure could have important implications for ecosystem patterns and processes. First, the low abundance of root-parasitic nematodes (and presumably root herbivory) under woody plants may be one mechanism by which woody plants are able to establish and compete effectively with grasses during succession from grassland to woodland. Second, the large increase in bacterivores following woody encroachment likely accelerates microbial turnover and the mineralization of N, thereby providing a feedback that enables the persistence of N-rich woody plant communities.     

Responses of root-feeding nematodes (Helicotylenchus spp.) to local and non-local populations of the host plant Ammophila arenaria

The root-feeding nematode community of wild plants may vary throughout their natural range. Little is known about how the variation of wild plants along their range affects their relationship with root-feeding nematodes. In the present study, we examined local and non-local combinations of host plants and root-feeding nematodes to test the hypothesis that nematode reproduction is favoured by local hosts. In two indoor experiments, we exposed populations of the wild dune grass Ammophila arenaria from northern and southern European coastal sand dunes to plant parasitic nematode species (Helicotylenchus spp.) from those same geographical origins. First, we used the southern nematode species to determine whether the effect of a local versus a non-local host may depend on nematode density. Then, in a cross-inoculation experiment we investigated how both nematode species performed with their local, as compared to the non-local hosts.

In both experiments, plant biomass and ontogenetic characteristics were not significantly different between the northern and southern populations. The applied nematode densities did not have a negative impact on plant performance. This allowed us to consider the response of the two different nematode species and their host plants without co-varying differences in plant responses. Reproduction of the nematode species differed according to host origin, but contrary to what we expected, nematode species did not perform better on their local hosts. Helicotylenchus n. sp., the southern species originating from Portugal, performed better on the non-local than on the local host. Male to female ratios were significantly different between the two nematode populations and were lowest in Helicotylenchus pseudorobustus from The Netherlands. Female and juveniles percentages were also quite distinct, with more females in the nematode species from The Netherlands and more juveniles in the nematode species from Portugal.

We concluded that ectoparasitic root-feeding nematodes Helicotylenchus spp. do not necessarily perform best on their local host population of the foredune grass A. arenaria. Our results imply that the natural distribution of Helicotylenchus spp. along the European coast is determined by other factors than host populations. These other factors that could be abiotic, e.g. water availability, or biotic, e.g. local natural enemies adapted to Helicotylenchus spp. Introducing plant genotypes from other parts of the natural range will, therefore, not necessarily lead to reduced abundance of semi-endo or ectoparasitic root-feeding nematodes.     

Interactions between nematodes and microbial communities in a tropical soil following manipulation of the soil food web

The carrying capacity for microflora and nematofauna was manipulated (using a bactericide, a fungicide, manure or a growing millet plant) in a poor tropical soil, in order to identify relationships between the soil microbes and nematodes and to assess the influences of these organisms on nitrogen flux. The experiment was conducted for 4 months in containers under greenhouse conditions, with analyses of soil, nematofauna and microbial characteristics at regular intervals. Manure input and initial bactericide application led to a significant increase in bacterial-feeding and fungal-feeding nematodes of coloniser-persister classes 1 and 2, respectively, whereas high manure input stimulated omnivorous nematodes (i.e. Microdorylaimus rapsus) which became the dominant trophic group. Changes in abundance of the different bacterial-feeding nematode taxa between treatments seemed to be more related to changes in the structure of the microbial communities than to the total amount of micro-organisms, as suggested by the RISA fingerprint analysis of the bacterial communities. Canonical analysis of nematode feeding guilds, combined with soil microbial and mineral nitrogen parameters as well as multiple regression showed that the bacterial-feeding nematodes influenced the inorganic N content in the soil whereas microbial biomass was determined by total nematode abundance and not by any specific trophic group.     

Identification and localization of food-source microbial nucleic acids inside soil nematodes

Microorganisms (e.g., prokaryotes, fungi) are food sources for soil nematodes, but they can also be potential mutualists or pathogens. Understanding the linkages between microorganism and invertebrate diversity in soils requires the ability to distinguish between these microbial roles. We tested the potential of a taxon-specific fluorescent in situ hybridization (FISH) procedure for identifying and localizing microbial rRNA within the bodies of soil nematodes. Our objective was to determine whether the rate of digestion permitted detection and identification of food-source nucleic acids within the nematode digestive system (i.e., pharynges, intestines) before their breakdown. First, using laboratory cultures of Caenorhabditis elegans maintained on Escherichia coli, we were able to localize bacterial rRNA throughout the nematode pharynx with the universal bacterial-probe EUB338, although never in the intestines. Second, we applied the fungal rRNA probe FR1 to Aphelenchus avenae cultured on the fungus Rhizoctonia solani. We were unable to detect fungal rRNA within these nematodes, and it appears that this material may be digested rapidly. Next, we applied our technique to nematodes extracted directly from soils. We were able to localize bacterial rRNA within the pharynges of bacterial-feeding species of nematodes from desert soils. We also localized archaeal rRNA using the probe ARC344. Finally, application of EUB338 to desert soil nematodes revealed the presence of bacteria in the intestines of some nematodes and within the ovary of a single nematode. This technique has great potential for use in understanding the feeding behavior of bacterial-feeding soil nematodes and in studies of nematode:bacterial relationships.     

Physiological and DNA fingerprinting of the bacterial community of Meloidogyne fallax egg masses

Bacterial communities associated with the plant-parasitic nematode Meloidogyne fallax egg masses were compared with those present in the rhizoplane. Two agricultural soils with different nematode population dynamics were used in a glasshouse study, with either potato or tomato as host plant for the nematode. DNA fingerprints and bacterial community level physiological profiles (CLPP) were studied using PCR-DGGE of 16S rRNA genes and Biolog Eco MicroPlates. CLPP and DNA fingerprinting both showed differences between egg mass and rhizoplane bacterial communities. PCR-DGGE showed some bands specific to the egg mass samples. These bands were present in egg masses from both soils. This study shows that egg masses of M. fallax have a distinct bacterial community from that of the adjacent rhizoplane. Soil and host plant factors interactively influence the bacterial egg mass community. Differences in nematode population dynamics between the sample sites cannot be clearly related to the observed differences in the egg mass microbial communities.     

Salt marsh rhizosphere affects microbial biotransformation of the widespread halogenated contaminant tetrabromobisphenol-A (TBBPA)

Estuarine sediments are the repository for a wide range of contaminants. Anthropogenic impacts and variations in the belowground biomass of salt marsh plants potentially select for different sediment microbial communities with different functional capabilities, including the ability to biotransform anthropogenic contaminants. There are large differences in both root morphology and the amount of fine root biomass of Spartina alterniflora and Phragmites australis; Spartina is the species commonly used to replace Phragmites in northeastern US salt marsh restoration projects. Our study compared the effect of these two macrophyte species on sediment microbial communities responsible for the biotransformation of the halogenated flame retardant tetrabromobisphenol A (TBBPA). Sediments were obtained from contaminated and uncontaminated salt marsh field sites in New Jersey. Anaerobic methanogenic sediment microcosms were established and incubated for up to 130 days. TBBPA was reductively dehalogenated resulting in the transient formation of two intermediates, identified as tribromobisphenol A and dibromobisphenol A, and the formation and accumulation of bisphenol A (BPA) as the end product. Spartina sediments from both sites were found to dehalogenate TBBPA more rapidly than the Phragmites or unvegetated sediments, resulting in greater production of BPA. Microbial community diversity as measured by in situ sediment phospholipid fatty acid (PLFA) composition prior to TBBPA exposure, was found to be higher in the uncontaminated sediments; differences in microbial PLFA diversity were not seen in contaminated sediments associated with either the different plant species or unvegetated sediment. The results of this study demonstrate that these two plant species affected sediment microbial community function with respect to dehalogenation capabilities, even though the disturbed and undisturbed sediments varied in microbial community composition.     

Management regimes for a plant invader differentially impact resident communities

Management of plant invaders causes disturbance and the compounding effects of both invasion and management on biodiversity merit rigorous assessment. We explored the impacts of both plant invasion and management disturbance in coastal dune communities of Australia invaded by the introduced shrub bitou bush (Chrysanthemoides monilifera ssp. rotundata). We compared the effects of intensive, manually based invader control with those of extensive control (mainly herbicide spraying from aircraft) across fore dune communities. We examined one management regime, which was typically intensive, in hind dune communities. Our main aim was to test the prediction that intensive methods would achieve better biodiversity outcomes than extensive approaches in fore dune communities. We found that extensive management created native species complements that diverged from non-invaded sites while intensive management approached non-invaded site conditions. However, intensively managed sites were also richer in other exotic species than extensively managed sites. Thus, while biodiversity outcomes were better under intensive management, the risk profile of such sites was increased by the greater array of exotics that could potentially replace the original invader. The positive effects of management evident on some fore dunes were not found in hind dunes, where managed sites had the highest exotic species richness and similar bitou bush seedling abundance as both non-invaded and bitou-invaded sites. Hind dune managed sites were also compositionally distinct from non-invaded sites. Thus fore and hind dune communities exhibited different responses to bitou management regimes.     

Soil nematode assemblages as bioindicators of primary succession along a 120-year-old chronosequence on the Hailuogou Glacier forefield,SW China

Successional dynamics in terrestrial ecosystems is important for interactions between aboveground and belowground subsystems. In this study, nematode communities in a Hailuogou Glacier Chronosequence from seven stages were investigated to determine whether changes in soil phosphorus (P) and nematode assemblages parallel those observed in aboveground communities, and whether the primary succession in this chronosequence has entered a retrogressive phase after 120 years of succession. The initial 40-year succession, including stages 2, 3 and 4, can be viewed as a build-up phase. Especially at stage 3, vegetation succession from grassland to forest accelerated the accumulation of plant litter and bioavailable P, paralleled with a sharp increase in nematode abundance. The mature phases covering stages 5, 6 and 7 displayed most balanced nematode communities, in which abundance, taxon richness, maturity index and structure index were at highest. However, the last stage 7 appeared to show some retrogressive characteristics, as suggested by the reduced bioavailability of P and a significant decrease in nematode densities, along with the disappearance of some rare genera of nematodes from higher trophic guilds, resulting in decreases in the nematode channel ratio, plant parasite index and enrichment index. Thus, the Hailuogou Glacier Chronosequence may enter its retrogressive phase during the next decade or century. A bacterial-based nematode energy channel dominated the chronosequence during the development; by contrast, a fungivore-based channel was activated at the early and late stages, because fungivores are better adapted to nutrient-poor environments. Our results demonstrated that different nematode guilds have contrasting responses to chronosequence stages, possibly due to their different responses to bottom-up and top-down controls. Furthermore, soil nematode communities could be used as sensitive bioindicators of soil health in glacial-retreat areas.     

Rhizosphere priming of soil organic matter by bacterial groups in a grassland soil

Plants often impact the rate of native soil organic matter turnover through root interactions with soil organisms; however the role of root-microbial interactions in mediation of the “priming effect” is not well understood. We examined the effects of living plant roots and N fertilization on belowground C dynamics in a California annual grassland soil (Haploxeralf) during a two-year greenhouse study. The fate of ¹³C-labeled belowground C (roots and organic matter) was followed under planted (Avena barbata) and unplanted conditions, and with and without supplemental N (20 kg N ha⁻¹ season⁻¹) over two periods of plant growth, each followed by a dry, fallow period of 120 d. Turnover of belowground ¹³C SOM was followed using ¹³C-phospholipid fatty acid (PLFA) biomarkers. Living roots increased the turnover and loss of belowground ¹³C compared with unplanted soils. Planted soils had 20% less belowground ¹³C present than in unplanted soils after 2 cycles of planting and fallow. After 2 treatment cycles, unlabeled soil C was 4.8% higher in planted soils than unplanted. The addition of N to soils decreased the turnover of enriched belowground ¹³C during the first treatment season in both planted and unplanted soils, however no effect of N was observed thereafter. Our findings suggest that A. barbata may increase soil C levels over time because root and exudate C inputs are significant, but that increase will be moderated by an overall faster C mineralization rate of belowground C. N addition may slow soil C losses; however, the effect was minor and transient in this system. The labeled root-derived ¹³C was initially recovered in gram negative (highest enrichment), gram positive, and fungal biomarkers. With successive growing seasons, the labeled C in the gram negative and fungal markers declined, while gram positive markers continued to accumulate labeled belowground C. The rhizosphere of A. barbata shifted the microbial community composition, resulting in greater abundances of gram negative markers and lower abundances of gram positive, actinobacteria and cyclopropyl PLFA markers compared to unplanted soil. However, the longer-term utilization of labeled belowground C by gram positive bacteria was enhanced in the rhizosphere microbial community compared with unplanted soils. We suggest that the activities of gram positive bacteria may be major controllers of multi-year rhizosphere-related priming of SOM decomposition.     

Crop resistance traits modify the effects of an aboveground herbivore,brown planthopper,on soil microbial biomass and nematode community via changes to plant performance

Plant-mediated effects of aboveground herbivory on the belowground ecosystem are well documented, but less attention has been paid to agro-ecosystems and in particular how crop cultivars with different traits (i.e. resistance to pests) shape such interactions. A fully factorial experiment was conducted using four rice cultivars with different insect-resistance, with and without the aboveground herbivore Nilaparvata lugens (brown planthopper), and to test two hypotheses (1) aboveground herbivory affects the soil microbial biomass and nematode community by altering plant performance and soil resource availability and (2) herbivory effects will depend on cultivar resistance traits. Our results suggested that cultivar resistance mediated both herbivory intensity and herbivore effects on plant performance. N. lugens decreased the availability of soil resources (soluble sugars, amino acids, organic acids, dissolved organic carbon and nitrogen), microbial biomass and percentages of bacterivores when feeding on a susceptible cultivar but increased them in a resistant cultivar. However, total nematode abundance and the percentage of plant-parasitic nematodes responded in the opposite way, increasing under a susceptible cultivar and decreasing under a resistant cultivar. The development of plant-parasites under resistant cultivars before aboveground herbivory might contribute to their resistance traits. Our findings provide evidence that N. lugens significantly reversed the pattern of soil resource availability, microbial biomass and nematode community structure (abundance and trophic composition) across cultivars with distinct resistance. In the presence of aboveground pests, the agronomic use of resistant rice cultivars could also control populations of plant-parasites and promote soil resource availability, further extended to higher trophic level of soil food web.     

Plant species richness does not attenuate responses of soil microbial and nematode communities to a flood event

Human activities are causing climatic changes and alter the composition and biodiversity of ecosystems. Climate change has been and will be increasing the frequency and severity of extreme climate events and natural disasters like floods in many ecosystems. Therefore, it is important to investigate the effects of disturbances on ecosystems and identify potential stabilizing features of ecological communities. In this study, soil microbial and nematode communities were investigated in a grassland biodiversity experiment after a natural flood to investigate if plant diversity is able to attenuate or reinforce the magnitude of effects of the disturbance on soil food webs. In addition to community analyses of soil microorganisms and nematodes, the stability indices proportional resilience, proportional recovery, and proportional resistance were calculated. Generally, soil microbial biomass decreased significantly due to the flood with the strongest reduction in gram-negative bacteria, while gram-positive bacteria were less affected by flooding. Fungal biomass increased significantly three months after the flood compared to few days before the flood, reflecting elevated availability of dead plant biomass in response to the flood. Similar to the soil microbial community, nematode community structure changed considerably due to the flood by favoring colonizers (in the broadest sense r-strategists; c–p 1, 2 nematodes), particularly so at high plant diversity. None of the soil microbial community stability indices and few of the nematode stability indices were significantly affected by plant diversity, indicating limited potential of plant diversity to buffer soil food webs against flooding disturbance. However, plant diversity destabilized colonizer populations, while persister populations (in the broadest sense K-strategists; c–p 4 nematodes) were stabilized, suggesting that plant diversity can stabilize and destabilize populations depending on the ecology of the focal taxa. The present study shows that changes in plant diversity and subsequent alterations in resource availability may significantly modify the compositional shifts of soil food webs in response to disturbances.     

Grazing by nematodes on rhizosphere bacteria enhances nitrate and phosphorus availability to Pinus pinaster seedlings

The microbial loop is thought to play a major role in the mineralization of nutrients such as nitrogen (N) and phosphorus (P) in terrestrial ecosystems. This microbial loop is based on the grazing of bacteria by predators such as bacterial-feeding nematodes. However, little is known about the impact of grazing by nematodes on the mineral nutrition of woody plants. This study was undertaken to quantify the effect of nematode grazing on bacteria in the rhizosphere on the root architecture, growth and mineral nutrition (N and P) of a woody species (Pinus pinaster). Young P. pinaster seedlings were cultivated for 35 days in a simplified sterile experimental system with bacteria (Bacillus subtilis) and bacterivorous nematodes (Rhabditis sp.) isolated from soil samples collected from a 15-year old stand of maritime pine. To check the hypothesis that bacteria could be a source of nutrients, especially N, two N sources were supplied in the medium: (i) bacterial N labeled with ¹⁵N and (ii) nitrate. Phosphorus was supplied as insoluble inorganic tri-calcium phosphate (TCP). The results showed that the ¹⁵N flow from the bacteria to the plant shoots was only significant when nematodes were present, with an average accumulation of 14 ± 5 μg plant⁻¹ of ¹⁵N. Plants cultivated with nematodes also accumulated significantly more total N in their shoots than sterile ones or inoculated with bacteria, resulting in a net average increase in N of 700 μg plant⁻¹. The same result was observed for the total P accumulation in the shoots, as plants with nematodes accumulated an average of 300 μg plant⁻¹ more P than sterile ones or inoculated with bacteria. However, the presence of bacteria, whether alone or with nematodes, did not modify the root architecture. These results demonstrated that the presence of bacterial-feeding nematodes significantly enhanced N and P availability to P. pinaster seedlings, probably by improving plant use of nitrate and insoluble P supplied in the medium.