Variation in traits affecting nodulation of common bean under intercropping with maize and sole cropping

Common bean (Phaseolus vulgaris L.), an important food crop in Europe, America, Africa and Asia, is thought to fix only small amounts of atmospheric nitrogen. It contributes significantly to the sustainability of traditional cropping systems because of the predominance of small-scale farmers who cultivate beans in those areas. The objectives of this work were to evaluate bush bean varieties under common agronomic cropping systems and to evaluate breeding lines under low N-fertility sole cropping and intercropping systems. The purpose of the study was to characterize the genotype and cropping system's variability in symbiotic and plant characters and to identify the most suitable genotypes to establish an effective symbiosis with indigenous strains of Rhizobium. No significant differences among the bush bean varieties evaluated under typical fertilization practices were observed for N₂-fixation and plant traits except for seed nitrogen. Significant differences among the bean lines studied under low N-fertilization conditions were detected for plant growth,plant component and N₂-fixation traits. A significant interaction of bean genotype x cropping system was found for number of nodules per plant and nodule moisture on the bush bean varieties studied, and for days to emergence, days to flowering, end of flowering, shoot length, root dry weight and shoot nitrogen on the bean lines evaluated. Nodulation parameters were correlated positively with the yield components, shoot and root parts and duration of flowering, and correlated negatively with seed crude protein, pod and seed dimensions and seed dry weight. These observations indicate that it may be possible to increase both the symbiotic N₂-fixation and seed yield through plant breeding. This revised version was published online in August 2006 with corrections to the Cover Date.     

Genetics of nonnodulation in groundnut (Arachis hypogaea L.). Studies with single and mixed Rhizobium strains

Summary Genetic studies of nonnodulation in groundnut were carried out in a cross, NC 17×PI 259747, with a single Rhizobium strain, NC 92, and a native Rhizobium population.The normal nodulation of the parents, F₁ generations and backcross progenies, and the F₂ segregation for nodulation and nonnodulation confirmed that nonnodulation in groundnut is controlled by two duplicate recessive genes.Approved ICRISAT Journal Article No. 211.     

Studies on the distribution of complementary genes causing F1 weakness in common rice and its wild relatives. 2. Distribution of two complementary genes,Hwc-1 and Hwc-2 gene in native cultivars and its wild relatives of tropical Asia

Summary Distribution of two complementary genes Hwc-1 and Hwc-2 causing F₁ weakness was examined using 159 native rice cultivars and 30 strains of wild relatives collected from various sites of tropical Asia including the Himalayan foothills. Hwc-1 is carried by a Peruvian cultivar, Jamaica, a tester cultivar of this experiment. It was not found in the tested cultivars and strains. Hwc-2 was widely distributed in the Japonica types tested. No wild strains had either Hwc-1 or Hwc-2. Hwc-2 was infrequent in the Japonica types collected from Southern Asian countries. Hwc-2 was estimated to be indigenous to the Japonica types, may be linked with certain gene(s) related to adaptation.     

The potential for breeding an improved lucerne-rhizobium symbiosis. 1. Assessment of genetic variation

Summary Six cultivars of lucerne (Medicago sativa L.) were grown in all possible combinations with eight strains of Rhizobium meliloti in order to assess genetic variation in symbiotic nitrogen fixation. Host genotype and Rhizobium genotype effects on nitrogen fixation were respectively 4.8% and 21.0% of total phenotypic variance. Genetic variation due to host cultivar × Rhizobium strain interactions accounted for a further 6.0% of phenotypic variance. The results indicated low heritability of general symbiotic effectiveness in the host with interaction effects being large enough to suggest that plant performance may be unpredictable with populations of R. meliloti in field soils. Joint regression analysis showed that about 50% of the interactive variation could be explained by generalized differences in the sensitivity of cultivars to alterations in the genotype of Rhizobium strains. One cultivar, Siriver, was relatively insentitive to changes in the Rhizobium genotype whilst still maintaining high average yield. The implications of the results for lucerne breeding are discussed.     

Note on the presence of the sym-1 gene in Vicia faba hampering its symbiosis with Rhizobium leguminosarum

Summary A symbiotically defective mutant in Vicia faba is described. This character is controlled by a recessive gene named sym-1. Reciprocal graft experiments indicate that only the root system controls its expression. Depending on the strain of Rhizobium, the root phenotype can be either Fix⁺ Nod^- or Nod^-.     

Inheritance of resistance to Soybean mosaic virus in FT-10 soybean

The occurrence of a new isolate from the G5 strain of Soybean mosaic virus (SMV), which broke the resistance of soybean cultivar FT-10, was first reported in Brazil in 1995. Cultivar Davis is an ancestor of ‘FT-10’ and the likely source of resistance to the virus. Diallel crosses among resistant cultivars Epps (PI 96983), Ogden and FT-10, and susceptible cultivar Hill were made to investigate the inheritance of SMV resistance in FT-10. The experiments for genetic studies were performed undergreen house conditions. Plants of the F₂ population and F₃ families from each cross and the parents were inoculated with SMV G1 and G5 strains. Plants were classified as: symptom less (R), susceptible with typical symptoms of mosaic (S), and systemic necrosis (N). Plants showing necrosis or no symptoms were classified as resistant. Each F₃ family was classified as resistant (homozygous),susceptible (homozygous), or segregating (heterozygous). The results of both F₂ and F₃ were analyzed by Chi-square tests. The results suggested that FT-10 carries an allele at the Rsv ₁ locus for resistance to SMV. However, the allele is different from those in Epps and Ogden. The symbol Rsv ₁ ^d is a tentatively named for the newly detected allele in FT-10. This allele probably originated from Davis cultivar. This revised version was published online in July 2006 with corrections to the Cover Date.     

Heterosis of interspecific soybean hybrids for traits related to N2 fixation

Summary Three greenhouse experiments were conducted to compare the performance of soybean (Glycine max (L.) Merr.), wild soybean (G. soja Sieb. et Zucc.), and soybean x wild soybean hybrids for traits relating to N₂ fixation including nodulation, acetylene reduction, nodule leghemoglobin concentration, and nitrogen (N) accumulation and dry matter (DM) accumulation. In all three experiments G. max generally exceeded G. soja in nodulation, acetylene reduction, and N and DM accumulation while the soybean possessed higher nodule leghemoglobin concentration. In Experiment I, the mean of the hybrids did not differ significantly from the G. max parent in nodule mass, acetylene reduction activity, nodule leghemoglobin concentration, or DM accumulation. The hybrids did exceed the soybean parent in N accumulation, thus demonstrating high parent heterosis. In Experiments IIA and IIB with a more carefully chosen set of G. soja parents, high parent heterosis of individual crosses was common. Across the three experiments average high parent heterosis was 34, 28, and 28%, respectively, for nodule mass, N accumulation, and DM accumulation. If one accepts the assumption that hybrid vigor results from the accumulation of dominant alleles, then these alleles could theoretically be accumulated via selection in a homozygous genotype. If this is true than the results of the experiments reported here suggest that interspecific soybean x wild soybean crosses could serve as sources of homozygous lines which would exceed currently available soybean cultivars in nodule mass, and N and DM accumulation.This work was supported in part by the USDA Competitive Grants Program, Grant 82-CRCR-1-1039 and Cooperative Agreement 58-32U4-2-370 between the U.S. Department of Agriculture and the Agronomy Department, University of Maryland, Scientific Article No. A-4648, Contribution No. 7644 of the Maryland Agricultural Experiment Station.     

Association of isozyme genotypes with agronomic and seed composition traits in soybean

Summary Two crosses between Glycine max (L.) Merr. and G. soja Sieb. & Zucc. parents were used to study the association between isozyme marker loci and agronomic and seed composition traits in soybean. The parents possessed different alleles at six isozyme loci for Cross 1 (A80-244036 × PI 326581) and at eight isozyme loci for Cross 2 (A81-157007 × PI 342618A). A total of 480 BC₂F_4:6 lines from the two crosses was evaluated for 13 traits in two environments. Lines were grouped in locus classes from 0 to 5 according to the number of loci homozygous for the G. soja alleles that they possessed. Within each locus class, each isozyme genotype was represented by five random lines.Selection for G. max alleles at the isozyme loci was not effective in recovering the recurrent parent phenotype in either cross. In cross 1, however, BC₂F₄-derived lines in the 0- or 1- locus class more closely resembled the G. max parent than lines in the 4- or 5- locus classes for most of the agronomic and seed composition traits evaluated. Significant associations were found between particular isozyme genotypes and every trait analyzed. The estimated effect of genes linked to the Pgm1 locus was a delay in maturity of 6.0±3.4 days. In cross 1, the Idh2 locus was associated with a significant effect on linolenic acid content. The percentage of variation accounted for by the models of estimation varied according to the heritability of the trait. The R² was high (up to 78%) for maturity, lodging, and vining, and low (up to 21%) for seed yield. Most of the variation was associated with the BC₂F₁ family from which the lines were derived. There was little evidence that digenic epistasis was an important source of variation.Journal Paper No. J-13505 of the Iowa Agric. Home Econ. Exp. Stn., Ames, IA, Project 2475.     

Partial resistance to anthracnose in Brazilian land races of dry beans shows race specificity

Summary Fifty-four land races of dry beans (Phaseolus vulgaris), indigenous to areas of Brazil where anthracnose (caused by Colletotrichum lindemuthianum) is a common problem, were evaluated in field nurseries for partial resistance to race Brazilian 1 (B1) of C. lindemuthianum using symptom severity classes (SSC) from 0 to 6. Plants were selected if symptoms were present and the SSC was less than the 95% confidence interval of the mean SSC of the susceptible cultivar Carioca. S₁ progeny from selected plants were evaluated in air-conditioned chambers for partial resistance to races B1, delta, and kappa of C. lindemuthianum. Of 246 S₁ families evaluated, 145 families were partially resistant to one or two of the races [symptoms present, but S₁ family mean significantly (p<0.05) less than the mean of Carioca] and susceptible to the third. Six families were partially resistant to all three races. The remaining families were either susceptible or segregated for reaction to race B1. Partial resistance to C. lindemuthianum showed race specificity in the air-conditioned chambers and field nurseries.     

Genetics of Cyst Nematode Resistance in Soybean PIs 467312 and 507354

Soybean Cyst nematode (SCN) Heterodera glycines Ichinohe is the most serious pest of soybean [Glycine max (L.) Merr.] in the world and genetic resistance in soybean cultivars have been the most effective means of control. Nematode populations, however, are variable and have adapted to reproduce on resistant cultivars over time due mainly to the narrow genetic base of SCN resistance in G. max. The majority of the resistant cultivars trace to two soybean accessions. It is hoped that new sources of resistance might provide durable resistance. Soybean plant introductions PI 467312 and PI 507354, are unique because they provide resistance to several nematode populations, i.e. SCN HG types 0, 2.7, and 1.3.6.7 (corresponding to races 3, 5, and 14) and HG types 2.5.7, 0, and 2.7 (corresponding to races 1, 3, and 5), respectively. The genetic basis of SCN resistance in these PIs is not yet known. We have investigated the inheritance of resistance to SCN HG types 0, 2.7, and 1.3.6.7 (races 3, 5, and14) in PI467312 and the SCN resistance to SCN HG types 2.5.7 and 2.7 (races 1 and 5) in PI 507354. PI 467312 was crossed to ‘Marcus’, a susceptible cultivar to generate F₁ hybrids, 196 random F₂ individuals, and 196 F_2:3 families (designated as Pop 467). PI 507354 and the cultivar Hutcheson, susceptible to all known SCN races, were crossed to generate F₁ hybrids, 225 random F₂ individuals and 225 F_2:3 families (designated as Pop 507). The F_2:3 families from each cross were evaluated for responses to the specific SCN HG types in the greenhouse. Chi-square (χ²) analyses showed resistance from PI 467312 to HG types 2.7, and 1.3.6.7 (races 5 and 14) in Pop 467 were conditioned by one dominant and two recessive genes (Rhg rhg rhg) and resistance to HG type 0 (race 3) was controlled by three recessive genes (rhg rhg rhg). The 225 F_2:3 progenies in Pop 507 showed a segregation of 2:223 (R:S) for response to both HG types 2.5.7 and 2.7 (corresponding to races 1 and 5). The Chi-square analysis showed SCN resistance from PI 507354 fit a one dominant and 3 recessive gene model (Rhg rhg rhg rhg). This information will be useful to soybean breeders who use these sources to develop SCN resistant cultivars. The complex inheritance patterns determined for the two PIs are similar to the three and four gene models for other SCN resistance sources known to date.     

Genetic analysis of resistance to soybean cyst nematode in PI 438489B

Soybean (Glycine max L. Merr.) plant introduction PI 438489B is a unique source that has resistance to all known populations of soybean cyst nematode (Heterodera glycines Ichinohe, SCN). This PI line also has many desirable agronomic characteristics, which makes it an attractive source of SCN resistance for use in a soybean breeding program. However, characterization of SCN resistance genes in this PI line have not been fully researched. In this study, we investigated the inheritance of resistance to populations of SCN races 1, 2, 3, 5, and 14 in PI 438489B. PI 438489B was crossed to the susceptible cultivar ‘Hamilton’ to generate F₁ hybrids. The random F₂ plants and F₃ lines were evaluated in the greenhouse for reaction to these five populations of SCN races. Resistance to SCN races 1, 3, and 5 were mostly conditioned by three genes (Rhg Rhg rhg). Resistance to race 2 was controlled by four genes (Rhg rhg rgh rgh). Three recessive genes were most likely involved in giving resistance to race 14. We further concluded that resistance to different populations of SCN races may share some common genes or pleiotropic effects may be involved. This revised version was published online in July 2006 with corrections to the Cover Date.     

Assessment of conditions affecting Agrobacterium-mediated soybean transformation using the cotyledonary node explant

Conditions affecting Agrobacterium-mediated transformation of soybean [Glycine max (L.) Merr.], including seed vigor of explant source, selection system, and cocultivation conditions, were investigated. A negative correlation between seed sterilization duration and seed vigor, and a positive correlation between seed vigor and regenerability of explants were observed in the study, suggesting that use of high vigor seed and minimum seed sterilization duration can further improve transformation efficiency. Selection schemes using glufosinate or bialaphos as selective agents in vitro were assessed. Glufosinate selection enhanced soybean transformation as compared to bialaphos. The use of 6 mg L^-1 glufosinate during shoot induction and shoot elongation stages yielded higher final transformation efficiency ranging from 2.0% to 6.3% while bialaphos at 4 to 6 mg L^-1 gave 0% to 2.1% efficiency. Including cysteine and DTT during cocultivation increased the transformation efficiency from 0.2–0.9% to 0.6–2.9%. This treatment also improved T-DNA transfer as indicated by enhanced transient GUS expression. Shoot regeneration and Agrobacterium infection were attained in twelve soybean cultivars belonging to maturity groups I-VI. These cultivars maybe amenable to genetic transformation and may provide a valuable tool in soybean improvement programs. This revised version was published online in July 2006 with corrections to the Cover Date.     

Qualitative and quantitative evaluation of cassava bacterial blight resistance in F1 progeny of a cross between elite cassava clones

Deployment of resistant varieties is one major approach to controlling cassava bacterial blight (CBB), caused by Xanthomonas axonopodis pv. manihotis (Xam). To understand the genetic determinism of resistance to CBB, the use of reliable parameters measuring resistance is necessary. In order to test a relevant method for evaluation of quantitative resistance for mapping QTL (quantitative trait loci), the response of 150 F₁ individuals, inoculated with four different Xam strains (CIO-84, CIO-1, CIO-136 and CIO-295), was assessed under controlled conditions. We used two types of evaluations at different intervals after inoculation, one based on a scale of 0 to 5 and the second based on the determination of the bacterial population in the vascular system. Both evaluation types revealed interaction between strains and F₁ genotypes. Population values at 3 and 6 cm from the point of inoculation showed a high level of correlation. By performing an association analysis, at 7 and 15 days after inoculation, a significant positive correlation between both evaluation types was obtained. However, the disease rating at 30 days did not correlate with bacterial populations at either 7 or 15 days after inoculation, except for one strain, CIO-84. Evaluation of the bacterial population in stem tissues is time and labour consuming, consequently, for a rapid and reliable assessment of CBB resistance for QTL analysis, we strongly recommend evaluation based on the use of a symptom scale.     

Inheritance of resistance to Xanthomonas campestris pv. translucens in triticale

Summary Three triticale lines, Siskiyou, M2A-Beagle, and OK 77842 have been reported to possess resistance to bacterial leaf streak caused by Xanthomonas campestris, pv. translucens (Xct.). The three resistant lines were crossed to susceptible lines and crossed with each other. F₂, BC₁-F₁, BC₂-F₁ plants were inoculated with a mixture of two Xct strains. The segregation data indicate the presence of a single dominant gene in each of the three resistant lines to bacterial leaf streak. These three genes are either the same or closely linked herein designated as Xct₁.     

Inheritance of resistance in soybean PI 567516C to LY1 nematode population infecting cv. Hartwig

Worldwide, cyst nematode (SCN) Heterodera glycines is the most destructive pathogen on cultivated soybean (Glycine max (L.) Merr.). In the USA yield losses in 2001 were estimated to be nearly 60 million dollars. Crop losses are primarily reduced by the use of resistant cultivars. Nematode populations are variable and have adapted to reproduce on resistant cultivars overtime because resistance primarily traces to two soybean accessions. Recently cv. Hartwig was released which has comprehensive resistance to most SCN populations. A virulent nematode population LY1 was recently selected for its reproduction on Hartwig. LY1 population originated from a mass mating of Race 2 (HG Type 1.2.5-) females with Race 5 (HG Type 1.2-) males. LY1 nematode population infects currently known sources of resistance except PI 567516C. The female indices obtained on PI 567516C and Hartwig were 7% (resistant) and 155% (susceptible), respectively. However, the genetic basis of LY1 resistance in soybean PI 567516C is not known. Resistant PI line 567516C was crossed to susceptible cultivar Hartwig to generate 105 F_2:5 families. These families together with parents, seven indicator lines and a susceptible control cv. Lee-74 were evaluated for response to LY1 nematode population in the greenhouse. Chi-square analysis showed resistance in PI567516C to LY1 was conditioned by one dominant and two recessive genes (Rhg, rhg, rhg). Chi-square value was 0.15 and P = 0.70. This information will be useful to soybean researchers for developing resistant cultivars to nematode population that infects Hartwig.     

Inheritance and mapping of male sterility restoration gene in upland japonica restorer lines

Several upland Japonica breeding lines, WAB450-11-1-3-P40-HB (Abbreviated as WAB450-11), WAB450-11-1-2-P61-HB (WAB450-13), WAB450-l-B-P-91-HB (WAB450-14), IRAT216, IRAT359, and IRAT104, possessing restoring ability for the Dian 1 type cms (cms-D) line Dianyu 1A were recently identified at Food Crops Research Institute, Yunnan Academy of Agricultural Sciences, P. R. China. In this study, the inheritance of restoring ability in these lines was characterized through the production of backcross populations to the male-sterile and maintainer Dianyu 1 lines. Each of the restorer lines was used to pollinate Dianyu 1A to form a F₁ hybrid which was then backcrossed (1) with Dianyu 1B producing a BC₁F₁ population and (2) to the female parent Dianyu 1A producing a BC₅F₂ population. The lines were also crossed with the japonica restorer line C57, carrying the restorer gene Rf1 that was introgressed from indica, to form F₁ hybrids, these hybrids were then testcrossed with Dianyu 1A to study the allelic relationship of their restorer genes to Rf1. The inheritance in these testcross populations indicated that the complete restoring ability of WAB450-11, WAB450-13, WAB450-14, IRAT216, IRAT359, and the partial restoring ability of IRAT104 were controlled by dominant genes, and the gene in WAB450-13, WAB450-14, and IRAT216 was allelic or identical to Rf1. When 136 SSR markers were used to score 143 BC₁F₁ individuals from Dianyu 1A/WAB450-13//Dianyu 1B, the japonica Rf1 allele was found to be located between RM171 and RM6100 on the long arm of chromosome 10, an interval corresponding to that known for the indica Rf1 allele. The distance between RM171 and Rf1 is 2.8 cM, and that between Rf1 and RM6100 is 4.9 cM. Similar linkage results were obtained from mapping 89 individuals of the corresponding BC₅F₂ population (Dianyu 1A/6/Dianyu 1A/WAB450-13).     

Genotype x Bradyrhizobium japonicum strain interactions in dinitrogen fixation and agronomic traits of soybean (Glycine max L. Merr.)

Summary Bradyrhizobium japonicum strain G49 has been the only inoculum used in French soils. Soybean (Glycine max L. Merr.) cultivars were selected and tested according to their performances with this rhizobial strain. The aim of the present study was to determine the consequences of strain substitution on N₂ fixation abilities of various genotypes. Three genotypes and cultivar Weber, in combination with B. japonicum strain G49 or SMGS1, were cultivated in pots and tested for nitrogenase activity under differing nitrogen nutrition conditions. The reliability of ARA (acetylene reduction activity) measurement for assessing symbiotic nitrogen fixation under the experimental conditions used was checked. Genotypic variability for symbiotic fixation activity was observed with each strain under soil culture conditions; important genotype x strain interactions were also involved. These results were corroborated for the protein yield and other yield component performances of the various genotype-strain associations. Thus, in France, the replacement of strain G49 with another one might result in the alteration of the relative agronomic performances of the soybean cultivars, since N₂ fixation is considered as a major factor of soybean productivity.     

A quantitative trait locus influencing tolerance to Phytophthora root rot in the soybean cultivar ‘Conrad’

‘Conrad’, a soybean cultivar tolerant to Phytophthora root rot (PRR), and ‘OX760-6-1’, a breeding line with low tolerance to PRR, were crossed. F₂ derived recombinant inbred lines were advanced to F₆ to generate a population through single-seed descent. This population was used to identify quantitative trait loci (QTLs) influencing PRR tolerance in ‘Conrad’. A total of 99 simple sequence repeat (SSR), or microsatellite, markers that were polymorphic and clearly segregated in the F₆ mapping population were used for QTL detection. Based on the data of PRR in the field at two planting locations, Woodslee and Weaver, for the years 2000 and 2001, one putative QTL, designated as Qsatt414-596, was detected using MapMaker/QTL. Qsatt414-596 was flanked by two SSR markers from the linkage group MLG J, Satt414 and Satt596. Satt414 and Satt596 were also detected to be significantly (P < 0.005) associated with PRR using the SAS GLM procedure and were estimated to explain 13.7% and 21.5% of the total phenotypic variance, respectively.     

A single dominant gene in McCall soybean prevents effective nodulation with Rhizobium fredii USDA257

Summary Rhizobium fredii USDA257 will effectively nodulate Asiatic and unimproved soybean cultivars, such as Peking, but most of the highly selected North American cultivars, such as McCall, produce at most rudimentary, ineffective nodules. In R. fredii USDA 257, a locus containing 6 open reading frames is responsible for this cultivar specific incompatibility. To examine the genetic control of incompatability on the part of the host, the soybean cultivars Peking and McCall were crossed to produce five F₁ progeny. These plants and their selfed progeny were tested for nodulation with USDA257. Resistance to nodulation was found to be conditioned by a single dominant gene. These results indicate that, in soybean, strain specific resistance to nodulation can result from gene(s)-for-gene interactions.