Genetic analysis of landscape connectivity in tree populations

Genetic connectivity in plant populations is determined by gene movement within and among populations. When populations become genetically isolated, they are at risk of loss of genetic diversity that is critical to the long-term survival of populations. Anthropogenic landscape change and habitat fragmentation have become so pervasive that they may threaten the genetic connectivity of many plant species. The theoretical consequences of such changes are generally understood, but it is not immediately apparent how concerned we should be for real organisms, distributed across real landscapes. Our goals here are to describe how one can study gene movement of both pollen and seeds in the context of changing landscapes and to explain what we have learned so far. In the first part, we will cover methods of describing pollen movement and then review evidence for the impact of fragmentation in terms of both the level of pollen flow into populations and the genetic diversity of the resulting progeny. In the second part, we will describe methods for contemporary seed movement, and describe findings about gene flow and genetic diversity resulting from seed movement. Evidence for pollen flow suggests high connectivity, but it appears that seed dispersal into fragments may create genetic bottlenecks due to limited seed sources. Future work should address the interaction of pollen and seed flow and attention needs to be paid to both gene flow and the diversity of the incoming gene pool. Moreover, if future work is to model the impact of changing landscapes on propagule movement, with all of its ensuing consequences for genetic connectivity and demographic processes, we will need an effective integration of population genetics and landscape ecology.     

Models based on individual level movement predict spatial patterns of genetic relatedness for two Australian forest birds

Fine-scale landscape change can alter dispersal patterns of animals, thus influencing connectivity or gene flow within a population. Furthermore, dispersal patterns of different species may be influenced by the landscape in varying ways. Our research first aimed to examine whether the spatial genetic structure within populations of closely related bird species differs in response to the same landscape. Second, we examined whether individual-level movement characteristics are a mechanistic driver of these differences. We generated a priori predictions of how landscape features will influence dispersal (particularly the response of individuals to habitat boundaries both natural and human-induced) based on a movement model developed by Fahrig (Funct Ecol 21:1003–1015, 2007). This model allowed us to predict genetic relatedness patterns in populations of two passerine bird species with different life-history traits from Queensland, Australia (yellow-throated scrubwren Sericornis citreogularis, a habitat specialist; white-browed scrubwren Sericornis frontalis, a habitat generalist). We quantified our predictions using cost-distance modelling and compared these to observed pairwise genetic distances (a _r ) between individuals as calculated from microsatellite markers. Mantel tests showed that our a priori models correlated with genetic distance. Euclidean distance was most closely correlated to genetic distance for the generalist species (r = 0.093, P = 0.002), and landscape models that included the avoidance of unsuitable habitat were best for the specialist species (r = 0.107, P = 0.001). Our study showed that predictable movement characteristics may be the mechanism driving differences in genetic relatedness patterns within populations of different bird species.     

Linking ecological condition and the soundscape in fragmented Australian forests

Natural landscapes are increasingly subjected to anthropogenic pressure and fragmentation resulting in reduced ecological condition. In this study we examined the relationship between ecological condition and the soundscape in fragmented forest remnants of south-east Queensland, Australia. The region is noted for its high biodiversity value and increased pressure associated with habitat fragmentation and urbanisation. Ten sites defined by a distinct open eucalypt forest community dominated by spotted gum (Corymbia citriodora ssp. variegata) were stratified based on patch size and patch connectivity. Each site underwent a series of detailed vegetation condition and landscape assessments, together with bird surveys and acoustic analysis using relative soundscape power. Univariate and multivariate analyses indicated that the measurement of relative soundscape power reflects ecological condition and bird species richness, and is dependent on the extent of landscape fragmentation. We conclude that acoustic monitoring technologies provide a cost effective tool for measuring ecological condition, especially in conjunction with established field observations and recordings.     

Interactive effects of area and connectivity on the diversity of tachinid parasitoids in highly fragmented landscapes

Although many empirical and theoretical studies have elucidated the effects of habitat fragmentation on the third trophic level, little attention has been paid to the impacts of this driver on more generalist groups of non-hymenopteran parasitoids. Here, we used the highly-diverse group of tachinid flies as an alternative model to test the effects of landscape fragmentation on insect parasitoids. Our aims were: (i) to evaluate the relative importance of habitat area and connectivity losses and their potential interaction on tachinid diversity, (ii) to test whether the effects of habitat fragmentation changes seasonally, and (iii) to further assess the effect of habitat diversity on tachinid diversity and whether different parasitoid-host associations modify the species richness response to fragmentation. In 2012 a pan-trap sampling was conducted in 18 semi-natural grasslands embedded in intensive agricultural landscapes along statistically orthogonal gradients of habitat area, connectivity and habitat diversity. We found an interaction between habitat area and connectivity indicating that tachinid abundance and species richness were more negatively affected by habitat loss in landscapes with low rather than with relatively large habitat connectivity. Although tachinid communities exhibited large within-year species turnover, we found that the effects of landscape fragmentation did not change seasonally. We found that habitat diversity and host association did not affect tachinid species diversity. Our results have important implications for biodiversity conservation as any attempts to mitigate the negative effects of habitat loss need to take the general level of habitat connectivity in the landscape into account.     

The Implications of Metalandscape Connectivity for Population Viabilityin Migratory Songbirds

Landscape connectivity is considered important for species persistence, but linkages among landscape populations (metalandscape connectivity) may be necessary to ensure the long-term viability of some migratory songbirds at a broader regional scale. Because of regional source-sink dynamics, these species can maintain steady populations within extensively fragmented landscapes (landscape sinks) owing to high levels of immigration from source landscapes. We undertook a modeling study to identify the conditions under which immigration, an index of metalandscape connectivity, could rescue declining populations of songbirds in heavily disturbed landscapes. In general, low to moderate levels of immigration (m = 0–20%) were sufficient to rescue species with low edge-sensitivity in landscapes where<70% habitat had been destroyed. At the other extreme, moderate to high levels of immigration (m = 11–40%) were usually required to rescue highly edge-sensitive species in these same landscapes. Very high levels of immigration (m>40%) were required to rescue highly edge-sensitive species in extensively fragmented landscapes that had lost >50% habitat, or when any landscape lost ≥50% habitat gradually over a period of 100 or more years (r = 0.5% habitat lost/year). Paradoxically higher levels of immigration were thus necessary to offset population declines when habitat was lost gradually than when it was lost quickly, where population response lagged behind landscape change. This implies that the importance of metalandscape connectivity for population viability may not be fully appreciated in landscapes undergoing rapid rates of change. Natural immigration rates for migratory songbirds match the very high levels (>40%) we found necessary to sustain populations in heavily disturbed landscapes, which underscores the importance of metalandscape connectivity for the continued persistence of many migratory songbirds in the face of widespread habitat loss and fragmentation.     

Independent effects of connectivity predict homing success by northern flying squirrel in a forest mosaic

Landscape composition and configuration, often termed as habitat loss and fragmentation, are predicted to reduce species population viability, partly due to the restriction of movement in the landscape. Unfortunately, measuring the effects of habitat loss and fragmentation on functional connectivity is challenging because these variables are confounded, and often the motivation for movement by target species is unknown. Our objective was to determine the independent effects of landscape connectivity from the perspective of a mature forest specialist—the northern flying squirrel (Glaucomys sabrinus). To standardize movement motivation, we translocated 119 squirrels, at varying distances (0.18–3.8 km) from their home range across landscapes representing gradients in both habitat loss and fragmentation. We measured the physical connectedness of mature forest using an index of connectivity (landscape coincidence probability). Patches were considered connected if they were within the mean gliding distance of a flying squirrel. Homing success increased in landscapes with a higher connectivity index. However, homing time was not strongly predicted by habitat amount, connectivity index, or mean nearest neighbour and was best explained as a simple function of sex and distance translocated. Our study shows support for the independent effects of landscape configuration on animal movement at a spatial scale that encompasses several home ranges. We conclude that connectivity of mature forest should be considered for the conservation of some mature forest specialists, even in forest mosaics where the distinction between habitat and movement corridors are less distinct.     

Genetic population differentiation and connectivity among fragmented Moor frog (<Emphasis Type="Italic">Rana arvalis</Emphasis>) populations in The Netherlands

We studied the effects of landscape structure, habitat loss and fragmentation on genetic differentiation of Moor frog populations in two landscapes in The Netherlands (Drenthe and Noord-Brabant). Microsatellite data of eight loci showed small to moderate genetic differentiation among populations in both landscapes (F _ST values 0.022 and 0.060, respectively). Both heterozygosity and population differentiation indicate a lower level of gene flow among populations in Noord-Brabant, where populations were further apart and have experienced a higher degree of fragmentation for a longer period of time as compared to populations in Drenthe. A significant isolation-by-distance pattern was found in Drenthe, indicating a limitation in dispersal among populations due to geographic distance. In Noord-Brabant a similar positive correlation was obtained only after the exclusion of a single long-time isolated population. After randomised exclusion of populations a significant additional negative effect of roads was found but not of other landscape elements. These results are discussed in view of improving methodology of assessing the effects of landscape elements on connectivity. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Connectivity of mule deer (Odocoileus hemionus) populations in a highly fragmented urban landscape

Context

Urbanization is a substantial force shaping the genetic and demographic structure of natural populations. Urban development and major highways can limit animal movements, and thus gene flow, even in highly mobile species. Characterizing varying species responses to human activity and fragmentation is important for maintaining genetic continuity in wild animals and for preserving biodiversity. As one of the only common and wide-ranging large wild herbivores in much of urban North America, deer play an important ecological role in urban ecosystems, yet the genetic impacts of development on deer are not well known.

Objectives

We assessed genetic connectivity for mule deer to understand their genetic response to habitat fragmentation, due to development and highway barriers, in an increasingly urbanized landscape.

Methods

Using non-invasive sampling across a broad region of southern California, we investigated genetic structure among several natural areas that were separated by major highways and applied least-cost path modelling to determine if landscape context and highway attributes influence genetic distance for mule deer.

Results

We observed significant yet variable differentiation between subregions. We show that genetic structure corresponds with highway boundaries in certain habitat patches, and that particular landscape configurations more greatly limit gene flow between patches.

Conclusions

As a large and highly mobile species generally considered to be well adapted to human activity, mule deer nonetheless showed genetic impacts of intensive urbanization. Because of this potential vulnerability, mule deer and other ungulates may require further consideration for effective habitat management and maintenance of landscape connectivity in human-dominated landscapes.

     

Incidence of competitors and landscape structure as predictors of woodland-dependent birds

Globally, modification of landscapes for agriculture has had a strong influence on the distribution and abundance of biota. In particular, woodland-dependent birds are under threat across agricultural landscapes in Britain, North America and Australia, with their decline and extirpation attributed to the loss and fragmentation of habitat. Other native species have become over-abundant in response to anthropogenic landscape change and have strong interactive effects on avian assemblage structure. In eastern Australia, the hyper-aggressive noisy miner (Manorina melanocephala) often dominates woodlands in agricultural landscapes through interspecific competition, resulting in declines of species richness of woodland-dependent birds. We aimed to determine the relative influence and importance of interspecific competition, in situ habitat structure and landscape structure for woodland-dependent bird species at the landscape level. We recorded species-specific landscape incidence of woodland-dependent birds in 24 agricultural-woodland mosaics (25 km²) in southern Queensland, Australia. We selected extensively cleared landscapes (10–23 % woodland cover) where fragmentation effects are expected to be greatest. We applied generalised linear models and hierarchical partitioning to quantify the relative importance of the landscape-level incidence of the noisy miner, mistletoe abundance, shrub cover, woodland extent, woodland subdivision and land-use intensity for the incidence of 46 species of woodland birds at the landscape-scale. The landscape-level incidence of the noisy miner was the most important explanatory variable across the assemblage. Both in situ habitat structure and landscape structure were of secondary importance to interspecific aggression, although previous research suggests that the increasing incidence of the noisy miner in fragmented agricultural landscapes is itself a consequence of anthropogenic changes to landscape structure. Species’ responses to fragmentation varied from positive to negative, but complex habitat structure had a consistently positive effect, suggesting in situ restoration of degraded habitats could be a conservation priority. Landscape wide conservation of woodland-dependent bird populations in agricultural landscapes may be more effective if direct management of noisy miner populations is employed, given the strong negative influence of this species on the incidence of woodland-dependent birds among landscapes.     

Responses of Chilean forest birds to anthropogenic habitat fragmentation across spatial scales

Although it is recognized that anthropogenic forest fragmentation affects habitat use by organisms across multiple spatial scales, there is uncertainty about these effects. We used a hierarchical sampling design spanning three spatial scales of habitat variability (landscape > patch > within-patch) and generalized mixed-effect models to assess the scale-dependent responses of bird species to fragmentation in temperate forests of southern Chile. The abundances of nine of 20 bird species were affected by interactions across spatial scales. These interactions resulted in a limited effect of within-patch habitat structure on the abundance of birds in landscapes with low forest cover, suggesting that suitable local habitats, such as sites with dense understory cover or large trees, are underutilized or remain unused in highly fragmented landscapes. Habitat specialists and cavity-nesters, such as tree-trunk foragers and tapaculos, were most likely to exhibit interactions across spatial scales. Because providing additional sites with dense understory vegetation or large habitat trees does not compensate the negative effect of the loss of forest area on bird species, conservation strategies should ensure the retention of native forest patches in the mixed-use landscapes.     

Using binary and probabilistic habitat availability indices derived from graph theory to model bird occurrence in fragmented forests

Loss of connectivity is one of the main causes of decreases in habitat availability and, thus, in species abundance and occurrence in fragmented landscapes. It is therefore important to measure habitat connectivity for conservation purposes, but there are several difficulties in quantifying connectivity, including the need for species movement behavioral data and the existence of few consistent indices to describe such data. In the present study, we used a graph theoretical framework to measure habitat availability, and we evaluate whether this variable is adequate to explain the occurrence pattern of an Atlantic rainforest bird (Pyriglena leucoptera, Thamnophilidae). The playback technique was used to parameterize the connectivity component of habitat availability indices and to determine the presence or absence of the study species in forest patches. Patch- and landscape-level habitat availability indices were considered as explanatory variables. Two of these were landscape-level indices, which varied in terms of how inter-patch connections are defined, using either a binary or probabilistic approach. This study produced four striking results. First, even short open gaps may disrupt habitat continuity for P. leucoptera. Second, the occurrence of P. leucoptera was positively affected by habitat availability. Third, proper measures of this explanatory variable should account for the landscape context around the focal patch, emphasizing the importance of habitat connectivity. Finally, habitat availability indices should consider probabilistic and not binary inter-patch connections when intending to explain the occurrence of bird species in fragmented landscapes. We discuss some conservation implications of our results, stressing the advantages of an ecologically scaled graph theoretical framework.     

Pocket parks in a compact city: how do birds respond to increasing residential density?

The desire to improve urban sustainability is motivating many city planners to adopt growth strategies that increase residential density, leading to substantial changes to urban landscapes. What effect this change will have on biodiversity remains unclear, but it is expected that the role of public greenspace in providing wildlife habitat will become critical. We explored the role of urban “pocket parks” as habitat for birds, and how this role changed with increasing residential density in the surrounding neighbourhood. We found that parks in neighbourhoods with high levels of public greenspace (corresponding to less residential land) supported more bird species and individuals overall, and more woodland-dependent species, insectivores and hollow-nesters. Total greenspace area was more important (included in the best ranked models for all bird responses) than the configuration (number, average size and connectivity) of greenspace patches. The majority of species were common suburban birds, indicating that species we assume are tolerant to urban areas will be negatively affected by increasing residential density. Parks form part of an interconnected network of urban open space. For parks to continue to support a diverse native bird community, the network must be viewed, managed, and maintained in its entirety. We suggest three key management actions to improve the bird diversity values of urban greenspaces in compact cities: (1) Increase urban greenspace cover in residential neighbourhoods. (2) Increase vegetation structure in greenspace. (3) Encourage homeowners to plant trees and shrubs.     

Two measures of landscape-graph connectivity: assessment across gradients in area and configuration

Landscape connectivity is critical to species persistence in the face of habitat loss and fragmentation. Graph theory is a well-defined method for quantifying connectivity that has tremendous potential for ecology, but its application has been limited to a small number of conservation scenarios, each with a fixed proportion of habitat. Because it is important to distinguish changes in habitat configuration from changes in habitat area in assessing the potential impacts of fragmentation, we investigated two metrics that measure these different influences on connectivity. The first metric, graph diameter, has been advocated as a useful measure of habitat configuration. We propose a second area-based metric that combines information on the amount of connected habitat and the amount of habitat in the largest patch. We calculated each metric across gradients in habitat area and configuration using multifractal neutral landscapes. The results identify critical connectivity thresholds as a function of the level of fragmentation and a parallel is drawn between the behavior of graph theory metrics and those of percolation theory. The combination of the two metrics provides a means for targeting sites most at risk of suffering low potential connectivity as a result of habitat fragmentation.     

Simulating the effects of climate change on population connectivity of American marten (Martes americana) in the northern Rocky Mountains, USA

We utilize empirically derived estimates of landscape resistance to assess current landscape connectivity of American marten (Martes americana) in the northern Rocky Mountains, USA, and project how a warming climate may affect landscape resistance and population connectivity in the future. We evaluate the influences of five potential future temperature scenarios involving different degrees of warming. We use resistant kernel dispersal models to assess population connectivity based on full occupancy of suitable habitat in each of these hypothetical future resistance layers. We use the CDPOP model to simulate gene exchange among individual martens in each of these hypothetical future climates. We evaluate: (1) changes in the extent, connectivity and pattern of marten habitat, (2) changes in allelic richness and expected heterozygosity, and (3) changes in the range of significant positive genetic correlation within the northern Idaho marten population under each future scenario. We found that even moderate warming scenarios resulted in very large reductions in population connectivity. Calculation of genetic correlograms for each scenario indicates that climate driven changes in landscape connectivity results in decreasing range of genetic correlation, indicating more isolated and smaller genetic neighborhoods. These, in turn, resulted in substantial loss of allelic richness and reductions in expected heterozygosity. In the U.S. northern Rocky Mountains, climate change may extensively fragment marten populations to a degree that strongly reduces genetic diversity. Our results demonstrate that for species, such as the American marten, whose population connectivity is highly tied to climatic gradients, expected climate change can result in profound changes in the extent, pattern, connectivity and gene flow of populations.     

Landscape resistance and American marten gene flow

Landscape heterogeneity can influence animal dispersal by causing a directional bias in dispersal rate, as certain landscape configurations might promote, impede, or prevent movement and gene flow. In forested landscapes, logging operations often contribute to heterogeneity that can reduce functional connectivity for some species. American martens (Martes americana) are one such species, as they are considered specialists of late-seral coniferous forests. We assessed marten gene flow to test the hypothesis that habitat management has maintained landscape connectivity for martens in the managed forests of Ontario, Canada. We genotyped 653 martens at 12 microsatellite loci, sampled from 29 sites across Ontario. We expected that if forest management has an effect on marten gene flow, we would see a correlation between effective resistance, estimated by circuit theory, and genetic distance, estimated by population graphs. Although we found a positive relationship between effective resistance and genetic distance (Mantel r = 0.249, P < 0.001), marten gene flow was better described by isolation by Euclidean distance (Mantel r = 0.410, P < 0.001). Our results suggest that managed forests in Ontario are well connected for marten and neither impede nor promote marten gene flow at the provincial scale.     

Open areas in a landscape enhance pollen-mediated gene flow of a tree species: evidence from northern Switzerland

Habitat fragmentation often has negative consequences for genetic diversity, and thereby for the viability of populations. However, these negative consequences might be counteracted by gene flow as the latter provides functional connectivity between apparently isolated habitat fragments. Gene flow is itself influenced by landscape structure and composition, and it is therefore important to understand the relationship between gene flow and landscape structure and composition. We used linear LAD regression models to investigate the relationship between contemporary gene flow by pollen in the rare, insect-pollinated forest tree Sorbus domestica and several landscape features. None of the landscape components—which included closed forest, deep valleys, open land and settlements—proved to be an impermeable barrier to gene flow by pollen. We found evidence that settlements, large open areas, and a pronounced topography increased long-distance gene flow in the landscape as compared to a random model including all possible gene flow trajectories. These results are encouraging from a conservation view, as gene flow in species pollinated by generalist insects seems to provide functional connectivity and may help to maintain genetic diversity in rare plant species in fragmented landscapes.     

Can we face different types of storms under the same umbrella? Efficiency and consistency of connectivity umbrellas across different patchy landscape patterns

Context

The umbrella approach applied to landscape connectivity is based on the principle that the conservation or restoration of the dispersal habitats for some species also can facilitate the movement of others. Species traits alone do not seem to be enough to identify good connectivity umbrella species, showing the need to investigate the influence of additional factors on this property.

Objectives

We test whether the potential of a species as a connectivity umbrella can be influenced by landscape composition and configuration.

Methods

We simulated movement routes for eight hypothetical species in artificial patchy landscapes with different levels of fragmentation, habitat amount and matrix permeability. We determined the effectiveness of the connectivity umbrella of the virtual species using pairwise intersections of important habitats for their movements in all landscapes.

Results

The connectivity umbrella performance of all species was affected by the interaction of fragmentation level and habitat amount. In general, species performance increased with decreasing fragmentation and increasing habitat amount. In most landscapes and considering the same dispersal threshold, species able to move more easily through the matrix showed higher umbrella performance than those for which the matrix offered greater resistance.

Conclusions

The connectivity umbrella is not a static feature that depends only on the species traits, but rather a dynamic property that also varies according to the landscape attributes. Therefore, we do not recommend spatial transferability of the connectivity umbrella species identified in a landscape to others that have divergent levels of fragmentation and habitat quantity.

     

Effects of historical and present fragmentation on plant species diversity in semi-natural grasslands in Swedish rural landscapes

Habitat loss and fragmentation of natural and semi-natural habitats are considered as major threats to plant species richness. Recently several studies have pinpointed the need to analyse past landscape patterns to understand effects of fragmentation, as the response to landscape change may be slow in many organisms, plants in particular. We compared species richness in continuously grazed and abandoned grasslands in different commonplace rural landscapes in Sweden, and analysed effects of isolation and area in three time-steps (100 and 50 years ago and today). Old cadastral maps and aerial photographs were used to analyse past and present landscape patterns in 25 sites. Two plant diversity measures were investigated; total species richness and species density. During the last 100 years grassland area and connectivity have been reduced by about 90%. Present-day habitat area was positively related to total species richness in both habitats. There was also a relationship to habitat area 50 years ago for continuously grazed grasslands. Only present management was related to species density: continuously grazed grasslands had the highest species density. There were no relationships between grassland connectivity, present or past, and any diversity measure. We conclude that landscape history is not directly important for present-day plant diversity patterns in ordinary landscapes, although past grassland management is a prerequisite for the grassland habitats that can be found there today. It is important that studies are conducted, not only in very diverse landscapes, but also in managed landscapes in order to assess the effects of fragmentation on species.     

How should we measure landscape connectivity?

The methods for measuring landscape connectivity have never been compared or tested for their responses to habitat fragmentation. We simulated movement, mortality and boundary reactions across a wide range of landscape structures to analyze the response of landscape connectivity measures to habitat fragmentation. Landscape connectivity was measured as either dispersal success or search time, based on immigration into all habitat patches in the landscape. Both measures indicated higher connectivity in more fragmented landscapes, a potential for problematic conclusions for conservation plans. We introduce cell immigration as a new measure for landscape connectivity. Cell immigration is the rate of immigration into equal-sized habitat cells in the landscape. It includes both within- and between-patch movement, and shows a negative response to habitat fragmentation. This complies with intuition and existing theoretical work. This method for measuring connectivity is highly robust to reductions in sample size (i.e., number of habitat cells included in the estimate), and we hypothesize that it therefore should be amenable to use in empirical studies. The connectivity measures were weakly correlated to each other and are therefore generally not comparable. We also tested immigration into a single patch as an index of connectivity by comparing it to cell immigration over the landscape. This is essentially a comparison between patch-scale and landscape-scale measurement, and revealed some potential for patch immigration to predict connectivity at the landscape scale. However, this relationship depends on the size of the single patch, the dispersal characteristics of the species, and the amount of habitat in the landscape. We conclude that the response of connectivity measures to habitat fragmentation should be understood before deriving conclusions for conservation management.     

Divergent landscape effects on genetic differentiation in two populations of the European pine marten (<Emphasis Type="Italic">Martes martes</Emphasis>)

Context

Quantifying gene flow in natural populations is a key topic in both evolutionary and conservation biology. Understanding the extent to which the landscape matrix facilitates or impedes gene flow is becoming a high priority in a context of worldwide habitat loss and fragmentation.

Objectives

Unexpectedly, a lower genetic diversity and a higher genetic structure have been previously observed in the less fragmented and the most forested habitat across four pine marten (Martes martes) populations in France. Our aim was to quantify the effect of landscape on the spatial distribution of genetic diversity in two populations in contrasting habitats.

Methods

We conducted an individual-based landscape genetics analysis in a highly fragmented rural plain (Bresse, n = 126) and in a highly forested (50 %) mountainous area (Ariège, n = 88) in France. We tested for isolation-by-resistance using least-cost distances and used a causal modeling approach on 16,384 landscape and 104 elevation resistance scenarios.

Results

Landscape structure influenced the genetic differentiation in Bresse, with vegetation providing more genetic connectivity over the study area than open areas, while roads and human buildings showed unexpected low resistance to gene flow. In Ariège, genetic differentiation was mainly associated with changes in elevation, with an optimal elevation for gene flow of around 1700 m, likely associated with changes in vegetation structure.

Conclusions

The pine marten seems to be able to cope with human-dominated landscapes and with fragmented forest landscapes, whereas elevation is the major driver of genetic differentiation in our mountainous landscape. Additionally, we highlight the importance of spatial replication in landscape genetics for deriving reliable conservation and management measures over the species distribution.