Microbial populations and the activity of the soil under agricultural and agricultural–pastoral systems

The effects of agricultural–pastoral and tillage practices on soil microbial populations and activities have not been systematically investigated. The effect of no-tillage (NT), no-tillage agricultural–pastoral integrated systems (NT-I) and conventional tillage (CT) at soil depths of 0–10, 10–20 and 20–30 cm on the microbial populations (bacteria and fungi), biomass-C, potential nitrification, urease and protease activities, total organic matter and total N contents were investigated. The crops used were soybean (in NT, NT-I and CT systems), corn (in NT and NT-I systems) and Tanner grass (Brachiaria sp.) (in NT-I system); a forest system was used as a control. Urease and protease activities, biomass-C and the content of organic matter and total N were higher (p < 0.05) in the forest soil than the other soils. Potential nitrification was significantly higher in the NT-I system in comparison with the other systems. Bacteria numbers were similar in all systems. Fungi counts were similar in the CT and forest, but both were higher than in NT. All of these variables were dependent on the organic matter content and decreased (p < 0.05) from the upper soil layer to the deeper soil layers. These results indicate that the no-tillage agricultural–pasture-integrated systems may be useful for soil conservation.     

Biochar and Conservation Agriculture Nexus: Synergy and Research Gaps for Enhanced Sustainable Productivity in Degraded Soils—Review

Degrading soil quality and productivity are major global challenges exacerbated by climate change and management practices. The dwindling global economy calls for other cost-effective approaches to address these challenges. This study reviewed a number of literatures on degraded soils, conservation agriculture (CA), and biochar soil amendment. The aim is to establish a base for more appropriate policy decisions and support for research on CA and biochar soil amendment nexus, which will enable the design of profitable and sustainable farming systems. Studies have highlighted the positive effects of CA practice, yet the adoption is low and some shortfalls have been reported. Likewise in the application of biochar as soil amendment, positive soil transformations have been recorded and some lapses. It is therefore imperative to explore the possibility of merging the two practices to see if the effects are complimentary, additive, or opposing in which case the positive values could be lost.     

Biochar is an effective amendment to remediate Cd-contaminated soils—a meta-analysis

Journal of Soils and Sediments - Cd immobilization can be affected by many factors, among which the soil pH, soil organic matter (SOM), and amendment types are the most critical factors that have...     

Preface — Recent advances in cleanup of contaminated sites

Journal of Soils and Sediments -     

Encapsulation of plant growth promoting Rhizobacteria—prospects and potential in agricultural sector: a review

Plant growth promoting rhizobacteria (PGPR) are a group of bacteria that can enhance plant growth. In fact, PGPR are biologically unstable and the bacteria activity degrades over time due to environmental factors, survival rate in soils, the compatibility with the crop and the interaction ability with the indigenous microflora in soil. Therefore, the utilization of PGPR as plant growth promoter agent is a major challenge in the agricultural sectors because of their bioactivity degradation needs to be inhibited to maximize its function as a plant growth promoter. The application of delivery system based on encapsulation technology shows a promising technique to store and deliver PGPR. However, the task to find the appropriate PGPR encapsulation method is the most challenging for agricultural industry. In addition, the lack of knowledge on the action mechanism of encapsulated PGPR, physico-chemical properties and their survival in the environment are the many challenges need to be addressed. In the present review, the encapsulation technology of PGPR and its properties have been reviewed in detail. Moreover, the remaining technical challenges of encapsulation systems including insignificant stabilization of PGPR, instability of the environmental and difficulty of their preparation are also extensively discussed here.     

Rice Straw-Derived Biochar Properties and Functions as Cu(Ⅱ) and Cyromazine Sorbents as Influenced by Pyrolysis Temperature

In this study, biochars from rice straw(Oryza sativa L.) were prepared at 200–600?C by oxygen-limited pyrolysis to investigate the changes in properties of rice straw biochars produced at different temperatures, and to examine the adsorption capacities of the biochars for a heavy metal, copper(Ⅱ)(Cu(Ⅱ)), and an organic insecticide of cyromazine, as well as to further reveal the adsorption mechanisms.The results obtained with batch experiments showed that the amount of Cu(Ⅱ) adsorbed varied with the pyrolysis temperatures of rice straw biochar. The biochar produced at 400?C had the largest adsorption capacity for Cu(Ⅱ)(0.37 mol kg-1) among the biochars,with the non-electrostatic adsorption as the main adsorption mechanism. The highest adsorption capacity for cyromazine(156.42 g kg-1) was found in the rice straw biochar produced at 600?C, and cyromazine adsorption was exclusively predominated by surface adsorption. An obvious competitive adsorption was found between 5 mmol L-1Cu(II) and 2 g L-1cyromazine when they were in the binary solute system. Biochar may be used to remediate heavy metal- and organic insecticide-contaminated water, while the pyrolysis temperature of feedstocks for producing biochar should be considered for the restoration of multi-contamination.     

Biochar use in a legume–rice rotation system: effects on soil fertility and crop performance

The aim of this study was to determine whether by applying biochar, it is possible to augment the beneficial effects of legume–crop rotation systems on soil fertility and crop performance. Repeated experiments were established in 2012 and 2013 in South-western Benin using a split-split plot design. Two legumes, Mucuna pruriens (mucuna) and Vigna unguiculata (cowpea), were planted for 42 days on biochar-amended and unamended plots and subsequently cut and applied as mulch 5 days before planting rice. Rice plants were either fertilized or not using a fertilizer rate of 60, 30, and 30 kg ha^?1 of N, P₂O₅, and K₂O, respectively. The results showed that the application of legume green manures and fertilizer, either singly or in combination, improved soil nutrient availability, CEC, shoot yield, and grain yield of rice on both biochar-amended and unamended plots. However, the effect was significantly (p < 0.05) greater on biochar-amended plots. The mean grain yield for all cropping seasons was 1.8 t ha^?1 for biochar-amended plots and 1.3 t ha^?1 for unamended plots. The greater grain yield of rice on biochar-amended plots was associated with improved soil fertility and increased N uptake.     

Biochar and organic fertilizer changed the ammonia-oxidizing bacteria and archaea community structure of saline–alkali soil in the North China Plain

Journal of Soils and Sediments - The application of a large amount of inorganic nitrogen (N) fertilizer resulted in an increasing N loss. It is an effective practice that biochar and organic...     

Can phosphorus and nitrogen addition affect ammonia oxidizers in a high-phosphorus agricultural soil?

Ammonia-oxidizing archaea (AOA) and bacteria (AOB), which convert NH₃ to NO₂^? in soils, are important for agricultural production. It is well known that N addition can strongly affect soil ammonia oxidizers, but little is known about P addition. Based on microcosm experiments, this study assessed the responses of ammonia oxidizers to chemical P addition in a typically high P agricultural soil with or without N supply. Six treatments examined were neither N nor P, P alone (0.15, 0.45, and 0.75 g P₂O₅ kg^?1 soil, respectively), N alone (0.25 g N kg^?1 soil), and N plus P (0.25 g N and 0.15 g P₂O₅ kg^?1 soil). Quantitative real-time PCR for the abundance and high-throughput sequencing for community structure were applied. The results revealed that P addition did not affect the abundances and community structures of AOA and AOB, but N addition significantly increased AOB abundance and alter its community structure. Without N supply, continuously increasing soil P availability did not affect these two groups of ammonia oxidizers. This study highlights the relationship between soil P availability and ammonia oxidizers and suggests that soil P availability could be as a potential indicator for predicting N-related ecosystem functions in agricultural production.     

Effect of cycloheximide on N2O and NO3– production in a forest and an agricultural soil

The present work aims at evaluating the effect of cycloheximide at concentrations of between 0.5 and 5mgg^–1 on N₂O and NO₃ ^– production in two slightly alkaline soils, sampled from deciduous woodland and arable cultivation. In the first experiment, peptone was used as the “inducing substrate” for heterotrophic activity, and soil was incubated with cycloheximide (at different concentrations) and/or acetylene (1mll^–1) to block induced eukaryotic protein synthesis and ammonia monooxygenase activity, respectively. Peptone addition stimulated N₂O and NO₃ ^– production significantly in woodland soil, whereas arable soil showed no significant N₂O emissions and low NO₃ ^– production. Low cycloheximide concentrations drastically reduced N₂O emissions in woodland soil, suggesting a potential role of fungi in N₂O emissions. However, acetylene was equally effective in blocking N₂O emissions and part of NO₃ ^– production, so that a possible role of ammonia monooxygenase in an organic-inorganic pathway of N nitrification in fungal metabolism can be hypothesized. A second experiment was carried out on the woodland soil to check if low cycloheximide concentrations had non-target biocidal effects on soil microorganisms. Attention was focused on the range of concentrations which had reduced N₂O emission in the woodland soil. The results suggested that at concentrations of cycloheximide between 0.5 and 2mgg^–1 any biocidal effect on microbial biomass was negligible in the first 48h; therefore only selective inhibition of protein synthesis could be expected. The whole nitrifier population seemed to be particularly sensitive to cycloheximide concentrations higher than 2.5mgg^–1. Received: 4 July 1997     

Negligible effect of X-ray μ-CT scanning on archaea and bacteria in an agricultural soil

X-ray Microfocused Computed Tomography (X-ray μ-CT) allows a non-destructive and three-dimensional observation of microbial habitats (i.e. pore space) in soil. A major premise for microbiological studies integrating X-ray μ-CT is that soil microorganisms are not affected by irradiation dose in terms of physiology and composition. However, the compatibility of X-ray μ-CT and soil biological experiments has been evaluated controversially.We performed an incubation experiment with packed microcosms to assess the effect of X-ray μ-CT on native microbial populations with emphasis on soil archaea and bacteria. Before (14 days) and after (1 and 14 days) scanning we analyzed (i) respiration, (ii) enzyme activity, (iii) microbial biomass, (iv) abundance and (v) community structure in scanned and control treatments.None of the microbial parameters exhibited significant differences among scanned and unscanned soil samples at all sampling times with the exception of lower archaeal cell numbers subsequent to X-ray μ-CT. Incubation time was the main factor that induced a significant alteration of microbial soil populations while irradiation had no or only very little effect thereupon. Taken together, three-dimensional in situ data obtained via X-ray μ-CT may well be combined with microbiological analyses in soil.     

Using the long‐term experiments at rothamsted to address current agricultural and environmental issues

In the Broadbalk Experiment at Rothamsted winter wheat has been grown in monoculture since 1843; wheat in rotation and additional treatments have been introduced during the course of the experiment. Since 1968, when new crop varieties and fungicides were introduced, yields have averaged over 6 t ha^‐1with either inorganic fertilizers or farmyard manure. With high‐yielding varieties of winter wheat on Boardbalk, or spring barley on the Hoosfield experiment, maximum yields are currently achieved with a combination of inorganic and organic inputs. The long‐term experiments have provided much information on the losses of nitrate and phosphate to water from different treatments and also on the impact of recent decreases of sulphur deposition on soil S dynamics and crop composition. Archived samples of soils and crops from the Park Grass Experiment (continuous cut pasture) and experiments in which arable land has reverted to forest have provided information on soil acidification. This has resulted mainly from acid deposition, previously SO₂ but now dominated by oxides of nitrogen. Acidification has caused the mobilization of toxic metals including Al, Mn and Zn and their increased uptake in herbage. Archived samples have also made it possible to study the deposition and accumulation of metals and organic pollutants in soils and crops and the changes in soil organic carbon and nitrogen content resulting from different management practices. Such data has been used to construct models of soil C and N dynamics. The on‐going sites provide experimental material for biological studies including fertilizer and management impacts on nitrous oxide fluxes and for testing hypotheses on soil biodiversity and quality.     

Preface—evaluating the response of critical zone processes to human impacts with sediment source fingerprinting

Journal of Soils and Sediments -     

Dissolution and Fractionation of Calcium—Bound and Iron—and Aluminum—Bound Humus in Soils

This paper deals with the development of a sequential extraction method to separate the Ca-bound and Fe-and Al-bound humus from soils.First,comparative analyses were carried out on dissolution of synthetic organo-mineral complexes by different extractants,i.e.0.1M Na4P2O7,0.1M NaOH 0.1M Na4P2O7 mixture,0.1M NaOH,0.5M (NaPO3)6 and 0.5M neutral Na2SO4.Among the five extractants,0.1M NaOH 0.1M Na4P2O7 mixture was the most efficient in extracting humus from various complexes.0.5M Na2SO4 had a better specificity to Ca than 0.5M (NaPO3)6,by only extracting Ca-bound humus without destorying Fe-and Al-bound organo-mineral complexes.Then sequential extractions first with 0.5M Na2SO4 and then with 0.1M NaOH 0.1M Na4P2O7 mixture were applied to a series of soil samples with different degrees of base saturation.The cations were dominated by Ca in the 0.5M Na2SO4 extract and by Al in the 0.1M NaOH 0.1M Na4P2O7 mixture.The sequential extraction method can efficiently separate or isolate Ca-bound and Fe-and Al-bound humus from each other.     

Composition and Structural Features of Calcium—Bound and Iron—and Aluminium—Bound Humus in Soils

Calcium-bound and iron-and aluminium-bound humus extracted from different soils collected from north to south of China were characterized by chemical and spectroscopic methods.Meaningful differences in the composition and structure between them were revealed by ^13 C NMR,visible spectroscopy and elemental analysis.Results showed that the contents of carbon,hydrogen and nitrogen were higher in iron-and aluminium-bound humus than in calcium-bound humus while oxygen content in calcium-bound humus was shown to be higher .The calcium-bound humus had higher C/N and O/C ratios than iron-and aluminiumbound humus.The calcium-bound humic acid(HA1) showed higher E4/E6 ratios than iron-and aluminumboud,humic acid(HA2)while iron-and aluminum-bound fulvic acid(FA2) showed higher E4/E6 ratios than calcium-bound fulvic acid(FA1).An inverse relationship between E4/E6 ratios and aromaticity as determined by 13C NMR spectra was observerd for HA and FA from black soil.The 13C NMR spectroscopy revealed that HA2 was more aromatic than HA1.On the other ,FA1 exhibited a higher aromaticity than FA2.     

Does Biochar Improve Establishment of Tree Seedlings in Saline Sodic Soils?

Reforestation of saline sodic soil is increasingly undertaken as a means of reclaiming otherwise unproductive agricultural land. Currently, restoration of degraded land is limited to species with high tolerances of salinity. Biochar application has the potential to improve physical, biological and chemical properties of these soils to allow establishment of a wider range of plants. In a glasshouse trial, we applied biochar made from Acacia pycnantha (5 Mg ha⁻¹) or no biochar to either a low (EC_e 4·75 dS m⁻¹, ESP 6·9), a moderate (EC_e 27·6 dS m⁻¹, ESP 29·3) or a high (EC_e 49·4 dS m⁻¹, ESP 45·1) saline sodic soil. The regional common reforestation species Eucalyptus viminalis and Acacia mearnsii were planted as tubestock in to the soils. Early establishment indicators, including growth, plant condition and nutrition, were assessed at the end of a simulated growing season, 108 days after biochar application. Application of biochar increased height, and decreased root : shoot and the concentration of Mn, N and S in plants of E. viminalis when grown in the highly saline sodic soil. Biochar application increased the concentration of B in leaves of E. viminalis and increased the concentration of P, K and S in leaves of A. mearnsii when grown in the low saline sodic soil. The results confirm that there is potential for biochar to assist in reforestation of saline sodic soils. Copyright © 2015 John Wiley & Sons, Ltd.     

Evaluation of cultivation methods and sustainable agricultural practices for improving shallot bulb production – a review

Abstract

Shallot is an economically important nutritive bulb vegetable and medicinal plant from Alliaceae family. Distributed in limited regions worldwide, in most cases, shallots widely grow in very cold to moderate cold temperate climates at high elevations required to induce bolting and overcome their bulbs and true seeds dormant period. Shallot responses to agricultural management and environmental conditions vary among different species and genotypes and, thus, selection of the elite genotypes is a prerequisite for obtaining desired yield and quality of bulbs and true seeds. Plant material (seed or bulb), plant selection, as well as cultivation and agricultural practices (importantly fertilization, spacing, planting date, and irrigation in greenhouse or farmland) critically affect productivity, phytonutrient value, and economic profit of the shallot produces. The knowledge of using biofertilizers and mulching techniques on shallots are currently evolving, but the information on the efficiency of nanobiofertilizers and eco-friendly and biodegradable mulching materials on shallots farming are still lacking. With the emphasis on sustainable agricultural systems, the efficiency of combined organic and inorganic fertilization is discussed and the potential biofertilizer agents are recommended. This review highlights the importance of using the integrated fertilization (organic and inorganic methods combined with biofertilizers) and irrigation methods (such as two-line spray hose irrigation combined with mulching), and the practices with the highest potential to further improve shallot farming are suggested. The information on shallots breeding is still lacking and requires extensive researches in the future.