局域尺度麦田土壤微生物群落构建过程及其驱动因素

为探究局域尺度麦田土壤微生物群落构建过程，本研究采集河南省济源市小麦种植户麦田土壤，应用高通量测序技术，研究局域尺度下麦田土壤细菌群落结构、群落构建过程及其影响因素。结果表明：①土壤细菌群落中优势菌门是酸杆菌门（Acidobacteria）和变形菌门（Proteobacteria）。通过曼特尔检验以及冗余分析发现有机质和全氮对细菌群落结构影响显著（P<0.05）。②细菌分子生态网络中不同细菌类群之间以合作关系为主，关键物种来自拟杆菌门（Bacteroidetes）、酸杆菌门和变形菌门。③细菌群落在系统发育上聚类，有机质和有效磷对细菌群落系统发育影响显著（P<0.05）。④确定性过程和随机性过程在细菌群落构建中的贡献率分别为74.59%和25.41%。⑤曼特尔检验发现最近物种指数（βNTI）值与有机质、全氮、全磷含量变化呈显著正相关（P<0.05）。有机质、全氮、全磷含量差异的增大导致细菌群落从同质性选择以及均质扩散向异质性选择过程的转变。综上所述，本研究发现确定性过程在局域尺度麦田土壤细菌群落构建中占主导地位，土壤有机质、全氮、全磷是影响细菌群落构建的关键环境因素。有机质和全氮还对细菌群落结构有显著影响。本研究有利于对局域尺度下麦田生态系统土壤微生物多样性形成机制的认识。     

铅胁迫下接种AM真菌对龙葵根际土壤微生物群落代谢特征的影响

为从微生态角度探索接种AM真菌对铅污染根际土壤微生物群落代谢特征的影响,以摩西管柄囊霉（Funneliformis mosseae）和幼套近明囊霉（Claroideoglomus etunicatum）为接种菌剂,在温室盆栽条件下以Pb⁴⁺含量为0 mg·kg^-1、200 mg·kg^-1、400 mg·kg^-1和800 mg·kg^-1土壤种植龙葵（Solanum nigrum）10周后采集根际土壤,采用Biolog微平板法测定龙葵根际土壤微生物群落的代谢变化。结果表明：1）微生物平均代谢活性（AWCD）随铅浓度增加呈降—升—降趋势;接种AM真菌显著提高了铅胁迫下根际土壤微生物的AWCD值,仅中浓度（400 mg·kg^-1）下未达显著差异。2）中浓度铅处理能显著提高根际土壤微生物对糖类及其衍生物、氨基酸类、脂肪酸和脂类及代谢产物类四大类碳源底物利用能力;接种AM真菌,高浓度（800 mg·kg^-1）铅处理显著提高了根际土壤微生物对氨基酸类底物的利用能力。3）铅胁迫下接种AM真菌提高了根际土壤微生物多样性指数,在中浓度下丰富度指数、Shannon-Wiener多样性指数、Simpson优势度指数均达显著水平。4）主成分分析显示,代谢产物类在PC1和PC2中种类最多,分别为6种和4种;糖类及其衍生物在PC3中种类最多（5种）。5）在铅胁迫和接种AM真菌共同作用下,微生物碳源利用主要受铅浓度调节,并且二者对微生物碳源利用具有显著交互效应。综上可知,接种AM真菌能够提高铅胁迫下龙葵根际土壤微生物多样性指数,增强根际土壤微生物对碳源底物的利用能力。该研究为进一步探究AM真菌强化植物联合修复技术提供了依据。     

菊芋根系分泌物改良滨海盐土的微生物机制

[目的] 探究菊芋在滨海盐土改良过程中的作用机制,分析菊芋和碱蓬根系分泌物的组分差异,明确土壤微生态环境的变化规律,进一步为盐土改良提供理论依据。[方法] 以种植菊芋和自然碱蓬植被为样地,对菊芋和碱蓬的根系分泌物进行对比分析,研究在根系分泌物作用下土壤微生物数量,微生物量碳氮,微生物群落结构以及土壤酶活性的变化,从而系统地阐明根系分泌物介导下盐土改良的微生物机制。[结果] 菊芋根际土壤中含有果糖（2.343×10^-3 g/kg）、葡萄糖（4.235×10^-3 g/kg）、蔗糖（2.670×10^-3 g/kg）,分别是碱蓬根际土壤的9.28,1.52和2.43倍。而菊芋根际与非根际中的果糖含量存在显著性差异（p<0.05）,其根际中含量为非根际的12.02倍。菊芋土壤还含有低聚果糖（蔗果三糖、蔗果四糖和蔗果五糖）,而碱蓬土壤中未检测出低聚果糖。除糖类外,菊芋根系分泌物还含有烷烃、酚、醛、酯、有机酸、醇、酮、酰胺,其组分较碱蓬土壤更为复杂且某些组分为菊芋特有〔1-氯—十八烷、正十六烷酸、2-甲基-Z-4-十四碳烯、十二酮、（Z）-9-十八碳酰胺、苯丙酸十六烷基酯等〕。功能性根系分泌物（如低聚果糖、果糖、十六烷、十八烷酸等）为根际微生物提供碳源、氮源和营养元素的同时,使菊芋根际土壤中微生物数量显著增加（p<0.05）,土壤微生物量碳、氮显著高于碱蓬土壤（p<0.05）,其值分别是碱蓬土壤的1.95和1.6倍,且菊芋根际的微生物量碳、氮约为非根际的1.69和1.50倍,优势菌群（变形菌门、放线菌门、绿弯菌门、酸杆菌门）所占比重达到90%,土壤有益菌群（Actinobacteria和Acidobacteria）的相对丰度显著增加（p<0.05）,土壤生物活性提升。此外,菊芋根际特有的分泌物（十六烷、烯醛等）,抑制了病原菌的生长,优化了微生物群落结构。除过氧化氢酶外,土壤脲酶、蔗糖酶和碱性磷酸活性显著提高（p<0.05）,其活性分别是碱蓬土壤的1.83,1.88和3.30倍。[结论] 种植菊芋后,通过根际分泌物介导,改善土壤微生物群落结构与功能,增加土壤酶活性,使土壤生物活力得以整体提升,与原生植被碱蓬相比,降低了土壤含盐量,起到了改良盐土的作用。     

基于共现网络的关键微生物对秸秆还田土壤小麦产量的影响

秸秆施用对作物产量影响效应不一致的机理尚不清楚,可能与秸秆施用诱导的土壤关键微生物群落组成及其丰度变化对产量影响的机理挖掘不够深入有关。选择红壤和黄褐土进行小麦盆栽实验,设置不同秸秆施用水平（S₀、S₁₀、S₃₀,分别为0、10、30 g·kg^-1土）,基于细菌-真菌共现网络评估微生物生态集群、酶活性、化学性质对秸秆施用下小麦产量的影响。结果表明,施用秸秆显著提升了两种土壤的速效养分、可溶性有机碳、微生物生物量碳含量及土壤酶（淀粉酶、转化酶、多酚氧化酶、脲酶、酸性磷酸酶、脱氢酶）活性,但红壤上小麦产量随着秸秆施用量增加显著增加,而黄褐土上则随着秸秆施用量增加而显著降低。与S₀相比,红壤中S₁₀和S₃₀处理的籽粒重和地上部生物量分别提升33%～44%和73%～85%,黄褐土中则分别降低22%～25%和55%。共现网络中两个关键生态集群的丰度、酶活性、土壤化学性质的共同正效应影响了红壤小麦产量变化,而关键生态集群丰度对黄褐土小麦产量变化有更大的正效应。秸秆施用显著增加了红壤中与小麦产量正相关的Aspergillus丰度,显著降低了黄褐土中与小麦产量正相关的Bacillus、Burkholderia、Basidiobolus丰度。综上,秸秆施用后红壤中关键有益微生物丰度增加、酶活性增强、化学性质改善叠加作用使小麦产量提升;而黄褐土上小麦产量降低主要与关键有益微生物丰度降低有关,其效应超过化学性质和酶活性的改善。以上结果暗示关键微生物丰度的改变对秸秆还田土壤上作物产量变异有重要影响。     

基于整合高通量绝对定量法的土壤微生物多样性分析

目前,常用的高通量测序技术只能得到微生物群落结构的物种种类和相对丰度,而整合高通量绝对定量法（iHAAQ）结合了高通量测序技术和qPCR技术,可以进一步计算得到微生物群落结构的绝对含量。相对丰度和绝对含量均是描述微生物群落结构的必备指标,其中相对丰度适合描述和评价微生物群落结构在单个样本内微生物之间的关系,而绝对含量更适于描述和评价微生物群落结构真实的数量变化以及在样本间微生物之间的关系。本研究基于发表的香蕉土传病害、再造沙地农业生态系统和微生物抑制剂作用3篇文献的高通量测序和qPCR数据,通过整合高通量绝对定量法获得3篇文献中古菌域、细菌域和真核生物域的真菌三类微生物群落结构的绝对含量数据,并进一步计算出这三类微生物整体（简称三域微生物）的绝对含量和相对丰度,从而对土壤微生物群落结构不同物种的相对丰度和绝对含量进行分析,旨在更加深入、准确地揭示土壤微生物群落及其生态功能。结果表明：（1）土壤中细菌的物种丰度和绝对含量高于古菌和真菌,在三域微生物中占据主导地位,缺乏绝对含量指标可能造成对微生物群落结构变化理解的偏差;（2）基于相对丰度和绝对含量数据分析,微生物群落结构α多样性指数结果相同,但β多样性指数结果不同;（3）在香蕉土传病害和再造沙地农业生态系统研究中,三域微生物的PCoA结果与细菌的结果较为相似,表明这两项研究中三域微生物群落结构主要受细菌的影响,但在微生物抑制剂的研究中未发现类似结果。整合高通量绝对定量法可以应用于所有同时进行高通量测序和qPCR测序的研究,在未来的土壤微生物群落结构研究中,采用高通量绝对定量法开展三域微生物群落的物种种类、相对丰度和绝对含量的整体评价,具有重要的生态学意义。     

不同土壤改良剂处理对连作西洋参根际微生物数量、土壤酶活性及产量的影响

以北京地区连作西洋参为研究对象, 通过3种土壤改良剂(熟石灰、EM菌剂、沼液)随机区组试验对其土壤理化性状、酶活性、根际微生物区系及产量进行了系统研究。结果表明: 低浓度熟石灰、中浓度EM菌剂及高浓度沼液处理最有利于提高西洋参产量; 施加熟石灰处理后, 土壤微生物主要类群数量显著减少, 土壤pH显著升高, 并对土壤脲酶活性有明显抑制作用; 施加沼液和EM菌剂处理后, 土壤有效微生物菌群显著增加(P<0.05), 土壤有机质和营养物质含量也显著增加(P<0.05), 并对土壤脲酶和多酚氧化酶活性有一定的促进作用。相关性分析发现, 土壤微生物主要类群的数量与蔗糖酶、脲酶、多酚氧化酶活性均有一定的相关性, 其中, 土壤细菌数量与蔗糖酶、多酚氧化酶活性呈极显著正相关(r分别为0.895^**和0.808^**), 土壤真菌和放线菌数量与蔗糖酶、脲酶、多酚氧化酶活性呈极显著正相关(r分别为0.932^**、0.769^**、0.840^**和0.837^**、0.891^**、0.797^**)。另外, 土壤细菌数量与有机质含量呈极显著正相关(r=0.863^**)。表明连作西洋参根际微生物区系及土壤酶活性与土壤理化性状之间紧密联系, 通过施加不同土壤改良剂, 可以为耐连作种植西洋参提供适宜的土壤环境。     

石灰性旱地土壤施用生物质炭对土壤节肢动物群落的影响

为探讨玉米秸秆生物质炭不同施用量对土壤节肢动物群落结构的影响，于2019年5—10月分别对0、5、10、20和50 t/hm²生物质炭处理下的贵州石灰性旱地农田土壤小型土壤节肢动物群落进行调查，并探讨土壤节肢动物群落与土壤温度、湿度、pH、电导率和有机碳等环境因子的关系。本研究共捕获土壤节肢动物14 133头，隶属于6纲21类群。研究表明：适量生物质炭添加（10 t/hm²）有助于提高土壤节肢动物个体数和类群数，高量施用（50 t/hm²）则不利于土壤节肢动物生存；典范对应分析结果显示，生物质炭施用导致环境因子的变化显著影响了土壤节肢动物群落结构（共解释了24.81%的物种变异，P<0.01），其中温度的影响最大，单独解释了物种变异的16.1%。总体上，施用生物质炭影响土壤微环境，进而影响土壤节肢动物群落组成和多样性，施用适量生物质炭（10 t/hm²）有益于农田土壤节肢动物的生存，但这一结论还需要在其他土壤类型和生物质炭中进行验证。     

稻虾种养新模式对稻田土壤肥力和微生物群落结构的影响

为探究稻虾种养新模式对稻田土壤肥力和微生物群落组成的影响,基于稻田土壤理化指标测定和16S rDNA扩增子高通量测序技术,比较稻虾种养新模式（NRS）、稻虾种养传统模式（TRS）和水稻单作模式（CK）对稻田土壤理化指标和微生物多样性和群落结构的影响。结果显示：与CK和TRS相比,稻虾种养新模式能显著提高土壤pH、有机质、有效磷、速效钾含量和土壤微生物多样性和丰富度。与CK相比,NRS稻田土壤细菌优势菌门中的酸杆菌门、绿弯菌门和疣微菌门相对丰度分别增加30.89%、36.38%和2.16%,变形菌门和脱硫菌门相对丰度分别降低17.96%和58.59%。与TRS相比,NRS稻田土壤细菌优势菌门中的脱硫菌门相对丰度增加14.93%,绿弯菌门、疣微菌门、变形菌门和酸杆菌门相对丰度分别降低39.29%、37.42%、16.27%和6.81%。相关性分析表明,土壤有机质、速效氮、有效磷、速效钾和pH是影响稻田土壤微生物群落结构的主要理化因子。以上研究表明,稻虾种养新模式有利于提升稻田土壤肥力,显著提高了稻田土壤微生物多样性和改善微生物群落结构;研究结果对稻虾种养新模式的示范推广具有一定的指导意义和...     

水分管理对水稻籽粒硒积累及根际土壤细菌群落多样性的影响

采用盆栽试验方法,研究不同水分管理方式对水稻根际土壤硒组分、籽粒硒积累以及根际土壤细菌群落多样性的影响。结果表明：在水稻的各生育期,好氧和干湿交替较淹水灌溉一定程度上提高了土壤pH和氧化还原电位（Eh）,土壤可溶性和可交换态硒含量增加,从而提高了土壤硒的有效性。水稻成熟后,不同部位的含硒量由高到低依次为根（1.38~2.22 mg·kg^-1）、叶（0.55~0.85 mg·kg^-1）、茎（0.53~0.61 mg·kg^-1）和籽粒（0.15~0.53 mg·kg^-1）。水稻籽粒含硒量以干湿交替灌溉最高,淹水灌溉最低,二者含硒量差异达显著水平。干湿交替灌溉的水稻产量显著高于常规淹水灌溉,且较淹水灌溉提高了7.83%,较好氧灌溉提高13.51%。水稻根际土壤优势菌为变形菌门、绿弯菌门、拟杆菌门、酸杆菌门、Patescibacteria和芽单胞菌门,变形菌门是不同水分管理方式下水稻根际土壤中丰度最高的细菌,水分管理措施显著影响其丰富度,干湿交替和好氧灌溉中变形菌门的丰富度明显高于淹水灌溉。从纲水平看,Gammaproteobacteria的丰度与土壤有效硒含量呈正相关,故Gammaproteobacteria丰度的增加可能是土壤硒生物有效性增加的另一个重要原因。综上,干湿交替灌溉不但能提高水稻产量和稻米硒含量,且较正常淹水管理节约用水,在水稻生产中,是一种优先推荐的水分管理方法。     

复合菌剂防控香蕉枯萎病的效果及其微生物学机制

由病原菌尖孢镰刀菌古巴专化型（Fusarium oxysporum f. sp. cubense (Foc)）侵染引起的香蕉枯萎病对全世界香蕉产业带来了毁灭性的影响,且目前尚无广泛采用的防治方法。研究复合生防真菌制剂对香蕉枯萎病的防治效果,以期为大田香蕉枯萎病的防治提供依据。设置3组不同的菌剂处理,分别为对照组CK、复合菌剂NFP、复合菌剂NFPT,通过两季的盆栽试验,研究复合菌剂对香蕉枯萎病的防治效果及其对土壤微生物多样性的影响;利用 Illumina Miseq 高通量测序平台对细菌16S rRNA基因和真菌ITS区域进行测序分析,采用实时荧光qPCR定量分析各处理病原菌的数量。结果表明：（1）复合菌剂处理（NFP和NFPT）对香蕉枯萎病有较好的防治效果,其防效分别为43%和48%。（2）施用复合菌剂增加了细菌和真菌群落丰富度和多样性。基于Bray-curtis距离矩阵的主坐标分析（PCoA）结果表明NFP和NFPT改变了细菌和真菌群落结构。NFP和NFPT处理增加了潜在有益微生物中与香蕉枯萎病病情指数呈显著负相关的大理石雕菌属Marmoricola、类诺卡氏菌属Nocardioides、野野村式菌属Nonomuraea、 norank_c__Acidobacteria、DS-100属和norank_f__Blastocatellaceae__Subgroup_4属的相对丰度,显著减少了病原菌尖孢镰刀菌的数量,重塑了土壤微生物结构和功能,增强其抗病性。     

Paddy System with a Hybrid Rice Enhances Cyanobacteria Nostoc and Increases N2 Fixation

Biological nitrogen(N) fixation(BNF) plays a significant role in maintaining soil fertility in paddy field ecosystems. Rice variety influences BNF, but how different rice varieties regulate BNF and associated diazotroph communities has not been quantified. Airtight,field-based ~(15)N_2-labelling growth chamber experiments were used to assess the BNF capacity of different rice varieties. In addition,both the 16 S rRNA and nifH genes were sequenced to assess the influence of different rice varieties on bacterial and diazotrophic communities in paddy soils. After subjecting a rice-soil system to 74 d of continuous airtight, field-based ~(15)N_2 labelling in pots in a growth chamber, the amounts of fixed N were 22.3 and 38.9 kg ha~(-1) in inbred japonica(W23) and hybrid indica(IIY) rice cultivars planted in the rice-soil systems, respectively, and only 1%–2.5% of the fixed N was allocated to the rice plants and weeds. A greater abundance of diazotrophs was found in the surface soil(0–1 cm) under IIY than under W23. Sequencing of the 16 S rRNA gene showed significantly greater abundances of the cyanobacterial genera Nostoc, Anabaena, and Cylindrospermum under IIY than under W23.Sequencing of the nifH gene also showed a significantly greater abundance of Nostoc under IIY than under W23. These results indicate that the hybrid rice cultivar(IIY) promoted BNF to a greater extent than the inbred rice cultivar(W23) and that the increase in BNF might have been due to the enhanced heterocystous cyanobacteria Nostoc.     

中国西北干旱土壤中固定二氧化碳的RuBisCO基因丰度及其多样性研究

Arid soils where water and nutrients are scarce occupy over 30% of the Earth's total surface. However, the microbial autotrophy in the harsh environments remains largely unexplored. In this study, the abundance and diversity of autotrophic bacteria were investigated, by quantifying and profiling the large subunit genes of ribulose-1,5-bisphosphate carboxylase/oxygenase(Ru Bis CO) form I(cbb L) responsible for CO2 fixation, in the arid soils under three typical plant types(Haloxylon ammodendron, Cleistogenes chinensis,and Reaumuria soongorica) in Northwest China. The bacterial communities in the soils were also characterized using the 16 S r RNA gene. Abundance of red-like autotrophic bacteria ranged from 3.94 × 105 to 1.51 × 106 copies g-1dry soil and those of green-like autotrophic bacteria ranged from 1.15 × 106 to 2.08 × 106 copies g-1dry soil. Abundance of both red- and green-like autotrophic bacteria did not significantly differ among the soils under different plant types. The autotrophic bacteria identified with the cbb L gene primer were mainly affiliated with Alphaproteobacteria, Betaproteobacteria and an uncultured bacterial group, which were not detected in the 16 S r RNA library. In addition, 25.9% and 8.1% of the 16 S r RNA genes were affiliated with Cyanobacteria in the soils under H. ammodendron and R. soongorica, respectively. However, no Cyanobacteria-affiliated cbb L genes were detected in the same soils. The results suggested that microbial autotrophic CO2 fixation might be significant in the carbon cycling of arid soils, which warrants further exploration.     

Differences in the activity and bacterial community structure of drained grassland and forest peat soils

The microbial activity and bacterial community structure were investigated in two types of peat soil in a temperate marsh. The first, a drained grassland fen soil, has a neutral pH with partially degraded peat in the upper oxic soil horizons (16% soil organic carbon). The second, a bog soil, was sampled in a swampy forest and has a very high soil organic carbon content (45%), a low pH (4.5), and has occasional anoxic conditions in the upper soil horizons due to the high water table level. The microbial activity in the two soils was measured as the basal and substrate-induced respiration (SIR). Unexpectedly, the SIR (μl CO₂ g⁻¹ dry soil) was higher in the bog than in the fen soil, but lower when CO₂ production was expressed per volume of soil. This may be explained by the notable difference in the bulk densities of the two soils. The bacterial communities were assessed by terminal restriction fragment length polymorphism (T-RFLP) profiling of 16S rRNA genes and indicated differences between the two soils. The differences were determined by the soil characteristics rather than the season in which the soil was sampled. The 16S rRNA gene libraries, constructed from the two soils, revealed high proportions of sequences assigned to the Acidobacteria phylum. Each library contained a distinct set of phylogenetic subgroups of this important group of bacteria.     

cry1Ac/cpti转基因大米水稻土中微生物群落的多样性研究

Two types of cry1Ac/cpti transgenic rice(GM1 and GM2)and their parental non-cry1Ac/cpti rice(CK1 and CK2)were planted in the field at Wufeng,Fujian Province,China for four years to investigate the influence of genetically modified rice on diversity of bacterial and fungal community in the paddy soil.The community composition and abundance of bacteria or fungi in the paddy soil were assessed at different growth stages of rice by denaturing gradient gel electrophoresis and real-time polymerase chain reaction based on 16S rRNA gene or SSU rRNA gene in the 4th year after the experimental establishment.The composition of bacterial or fungal community changed during rice growth,while no significant differences were observed between the fields cultivated with GM1and CK1,or between the fields cultivated with GM2 and CK2 in either bacterial or fungal community composition.The copy numbers of bacterial 16S rRNA gene in the soils with CK1,CK2,GM1 and GM2 ranged from 5.64×1011to 6.89×1011copies g-1dry soil at rice growth stages,and those of fungal SSU rRNA gene from 5.24×108to 8.68×108copies g-1dry soil.There were no marked differences in the copies of bacterial 16S rRNA gene or fungal SSU rRNA gene between CK1 and GM1 or between CK2 and GM2at any growth stage of rice.Planting cry1Ac/cpti transgenic rice had no significant effect on composition and abundance of bacterial and fungal community in paddy soil during the rice growing season at least in the short term.     

氮肥水平对稻田细菌群落及N2O排放的影响

作为土壤氮素转化的驱动者,微生物群落结构关系着稻田氮素利用及温室气体N_2O排放等问题。本研究分别基于高通量测序和荧光定量PCR技术,分析了不同氮肥水平[CK(不施氮)、N(施N 180 kg·hm-2)、2/3N(施N 120 kg·hm-2)、1/3N(施N 60 kg·hm-2)]下稻田细菌群落及硝化反硝化关键微生物功能基因丰度的变化。结果显示:氮肥水平提高增加了稻田细菌物种丰富度Chao1指数和群落多样性Shannon指数,改变了细菌群落组成,其中与硝化作用相关的硝化螺菌门Nitrospirae和嗜酸的醋杆菌门Acidobacteria的相对丰度随氮肥水平提高而增加,但甲烷氧化菌Methylosinus的相对丰度随氮肥水平提高而降低。氮肥水平对稻田硝化作用关键微生物氨氧化细菌amo A基因丰度的影响较大,0~5 cm和10~20 cm深度土层中的amo A基因丰度均随氮肥用量增加而提高;反硝化作用关键微生物功能基因nir S、qno B和nos Z的丰度在不施肥处理(CK)中显著低于施肥处理(1/3N、2/3N和N)(P0.05),但1/3N、2/3N和N处理的稻田nir S基因丰度没有明显差异;0~5 cm土层中qno B和nos Z基因丰度存在随氮肥水平提高而增加的趋势,10~20 cm土层中nos Z基因丰度在2/3N和N处理下显著高于1/3N处理(P0.05)。N处理的稻田N_2O排放通量显著高于2/3N及1/3N处理(P0.05),后者又显著高于CK处理(P0.05)。相关分析结果表明稻田N_2O排放通量与0~5 cm土层中硝化螺菌门Nitrospirae相对丰度及10~20 cm土层中amo A基因丰度存在显著相关性(P0.05,n=10)。综上所述,氮肥水平提高增加了稻田细菌群落多样性,促进了稻田N_2O排放,且本研究稻田中硝化作用微生物群落及丰度变化与稻田N_2O排放的关系更为密切。     

A DGGE analysis shows that crop rotation systems influence the bacterial and fungal communities in soils

A better understanding of the relationships among different cropping systems, their effects on soil microbial ecology, and their effects on crop health and productivity is necessary for the development of more efficient, sustainable crop production systems. We used denaturing gradient gel electrophoresis (DGGE) to determine the impacts of crop rotations and crop types on bacterial and fungal communities in the soil. The communities of bacterial 16S rRNA genes and fungal 18S rRNA genes were analyzed in experimental field plots that were kept under 4 different crop rotation systems from 1999 to 2008 (continuous cabbage (Brassica oleracea var. capitata L.), cabbage–lettuce (Lactuca sativa L.) rotation, cabbage–radish (Raphanus sativus L. var. longipinnatus L.H. Bailey) rotation, and a 3-year crop rotation). A principal component analysis (PCA) and a canonical correspondence analysis (CCA) revealed that both the bacterial and fungal communities in bulk soils were influenced by the crop rotation systems. However, the primary factors influencing each community differed: bacterial communities were most affected by soil properties (especially carbon content), while fungal communities were influenced most strongly by rotation times. To elucidate factors that may cause differences in crop rhizosphere microbial communities, the microbial communities in the harvested cabbage rhizospheres were also analyzed. The results suggest that the fungal communities in bulk soil are related to the rhizosphere fungal communities. Our present study indicates that the microbial communities in bulk and rhizosphere soils could be managed by crop rotation systems.     

Development of soil microbial communities during tallgrass prairie restoration

Soil microbial communities were examined in a chronosequence of four different land-use treatments at the Konza Prairie Biological Station, Kansas. The time series comprised a conventionally tilled cropland (CTC) developed on former prairie soils, two restored grasslands that were initiated on former agricultural soils in 1998 (RG₉₈) and 1978 (RG₇₈), and an annually burned native tallgrass prairie (BNP), all on similar soil types. In addition, an unburned native tallgrass prairie (UNP) and another grassland restored in 2000 (RG₀₀) on a different soil type were studied to examine the effect of long-term fire exclusion vs. annual burning in native prairie and the influence of soil type on soil microbial communities in restored grasslands. Both 16S rRNA gene clone libraries and phospholipid fatty acid analyses indicated that the structure and composition of bacterial communities in the CTC soil were significantly different from those in prairie soils. Within the time series, soil physicochemical characteristics changed monotonically. However, changes in the microbial communities were not monotonic, and a transitional bacterial community formed during restoration that differed from communities in either the highly disturbed cropland or the undisturbed original prairie. The microbial communities of RG₉₈ and RG₀₀ grasslands were also significantly different even though they were restored at approximately the same time and were managed similarly; a result attributable to the differences in soil type and associated soil chemistry such as pH and Ca. Burning and seasonal effects on soil microbial communities were small. Similarly, changing plot size from 300 m² to 150 m² in area caused small differences in the estimates of microbial community structure. In conclusion, microbial community structure and biochemical properties of soil from the tallgrass prairie were strongly impacted by cultivation, and the microbial community was not fully restored even after 30 years.     

Bacterial and archaeal communities in saline soils from a Los Negritos geothermal area in Mexico

In recent years, there has been a growing need to understand how salinity affects microbial communities in agricultural soils. Archaeal and bacterial community diversities and structures were investigated by high-throughput sequencing analysis of their 16S rRNA in two arable soils with low electrical conductivity(EC)(2.3 and 2.6 dS m^-1) and a saline soil(EC = 17.6 dS m^-1). The dominant bacterial phyla in the soils were Proteobacteria(relative abundance(RA) = 46.2%), followe...     

不同施肥处理稻田系统磷素输移特征研究

磷是水体富营养化限制性元素,近年来由于磷肥的过量施用,农田迁移的磷素已成为水体磷素的主要来源。本研究通过野外测坑定位试验,研究有机肥处理(OT)、混施肥处理(MT)和化肥处理(CT)3种施肥处理下,稻田中磷素的迁移流失特征及这3种处理对水稻产量和磷素利用率的影响,以探求稻田系统的最佳施磷方式。结果表明,CT、MT和OT 3种施肥方式的磷径流流失负荷分别为0.56 kg(P)·hm-2、1.13 kg(P)·hm-2和4.20 kg(P)·hm-2,渗漏流失负荷分别为0.42 kg(P)·hm-2、0.44 kg(P)·hm-2和0.45 kg(P)·hm-2;磷的径流流失占流失总量的56.86%~90.38%,是水稻田磷素流失的主要途径。磷的径流流失主要受施肥和降雨的影响,50%左右磷的流失发生在第1次径流过程;磷素渗漏流失特征不受施磷处理的影响,80%以上的流失发生在施肥后的前30 d。在磷素流失形态上,坑面水、渗漏水和径流水中磷素的主要形态均为可溶性磷;在土壤方面,MT处理和OT处理能保证土壤磷营养,CT处理的土壤有效磷和有机质含量则显著下降。3种施肥处理的水稻产量显著高于空白对照,且MT最高,为6 728.84 kg·hm-2;磷肥利用率CT和MT处理显著高于OT,CT和MT间差异不显著。综合比较,混施肥处理在磷素流失、土壤养分利用和水稻产量等方面更符合我国生态农业发展的要求。     

Wetland rice soils as sources and sinks of methane: a review and prospects for research

 Rice paddies are an important human-made ecosystem for the global CH₄ budget. CH₄, which is produced in the predominantly anaerobic bulk soil layers, is oxidized significantly before it reaches the atmosphere. Roots of rice, in addition to supporting the consumption of CH₄, contribute to the total CH₄ production in the soil. The various controls of CH₄ emission from this ecosystem depend on the structure of plant and microbial communities and their interactions. Availability of organic substrates, electron acceptors and other soil- and plant-related factors influence the activities of microbial communities. Agronomic practices including fertilization and application of pesticides have effects on CH₄ emission. Recent studies using molecular retrieval approaches with small subunit rRNA-encoding gene (rDNA) sequences and functional genes, showed the richness of diversity of the microbial community in rice paddy soils, which includes members of the Archaea and methanotrophs. There is need for further research to know the consequences, at the ecosystem level, of changes in microbial diversity and microbial communities in paddy soils. This will aid in understanding the mechanisms involved in the mitigating effects of certain agricultural practices. Received: 13 July 1999