Rapid monitoring of species abundance for biodiversity conservation: Consistency and reliability of the MacKinnon lists technique

Effective monitoring of biodiversity for conservation requires information on spatial and temporal variation in species’ abundances. As conservation resources are limited, monitoring methods are required that enable rapid and cost effective data collection. There are many traditional methods of estimating absolute abundance, such as territory mapping and distance sampling. However, these typically require more time, expertise and finances than are available across much of the globe. This is especially so in the tropics, where high species richness, low densities of many species and structurally complex environments also make monitoring particularly challenging. The MacKinnon lists technique is a rapid assessment methodology designed for use in species rich environments. This method is typically used to estimate species richness, but it has also been suggested that it can generate consistent abundance indices, even when observer experience and environmental conditions vary. If this suggestion is correct, the MacKinnon lists method could be used to assess spatial or temporal changes in abundance using diverse survey data. Here, we provide the first detailed assessment of intra- and inter-observer consistency of the Mackinnon List method in generating species abundance indices that could be useful for conservation monitoring purposes. As a case study, we use one of the world’s most diverse avifaunas, that of the forested Bolivian Andes. We show that MacKinnon lists can provide species abundance indices that are consistent between observers of markedly different experience of the focal avifauna (zero to six years), and between assessments carried out in different stages of the breeding season, between which detectability of individuals differed significantly. We believe this is the first time that a biodiversity monitoring method has been demonstrated to produce consistent abundance indices for a highly diverse avian tropical assemblage. We also suggest that the MacKinnon lists methodology has the potential to be a very useful conservation monitoring tool for many taxa in species rich environments, such as the tropics.     

Patterns of fish invasions in the Great Plains of North America

A basic step toward controlling invasive species outbreaks is to predict which assemblages or habitats are most susceptible to invasion and effects of invading species on native communities. However, because predictive models may not work across a wide range of conditions it is important to examine processes associated with fish invasions across different regions. In this study, we use data from 949 sites in Oklahoma and Kansas to examine spatial patterns of species invasions in the Great Plains region of the US. Of these sites, 16 were intensively sampled between 1977 and 1994 and used to evaluate temporal patterns of species introductions. We found a trend of increasing introduced species richness without a decline in native species richness over 18 years. However, total abundance and community structure of native assemblages has changed at several of these sites during this time period. Because some of these changes occurred at sites with few or no introduced species, factors other than interactions with introduced fishes may have been responsible for this pattern. A stepwise multiple regression model that included human population size, native species richness, mean annual precipitation and drainage area explained 43% of the variation in the number of non-native species across all sites. Most introduced species in this region have native ranges within the Mississippi River basin and therefore are presumably adapted to regional environmental conditions. Great Plains streams have, to some extent, resisted invasion by introduced species; however, our analysis shows that proximity to dense human populations and importance to humans has largely structured species introductions and can partly explain spatial patterns of species invasions in this region.     

Are higher taxa adequate surrogates for species-level assemblage patterns and species richness in stream organisms?

We examined the utility of using genera and families as surrogates of species-level assemblage patterns. We assessed cross-taxonomic level congruence, as well as taxonomic structure-environment and taxon richness-environment relationships in stream macroinvertebrate and diatom data surveyed across Finland. A number of interesting and important findings emerged from our analyses. For both macroinvertebrates and diatoms, species richness was strongly correlated with genus and family richness, and similarities in assemblage structure between species-, genus- and family-level matrices were also significant and relatively strong. For macroinvertebrates, the key environmental variables for assemblage structure and taxon richness remained the same irrespective of taxonomic level. For diatoms, however, the environmental variables related to variation in diatom taxon richness varied between taxonomic data sets, while determinants of assemblage structure remained largely the same. For macroinvertebrates, relatively similar amounts of variation in assemblage structure and taxon richness for species-, genus-, and family-level data were accounted for by the environmental variables, shared environmental and spatial variables, spatial variables, and total variation explained. By contrast, for diatoms, these components of variability differed somewhat between taxonomic levels. Our results suggest that, for macroinvertebrates, even family-level data could be used in rapid biodiversity assessments, where the objective is to examine biodiversity patterns and rank sites according to their conservation value in our study region. Families might also perform well in this task in other regions that are characterized by low faunal species diversity, but the situation is likely to be different for regions with higher species diversity. Although weaker than the relationships in macroinvertebrate data, species-level data for diatoms also showed rather similar patterns to genus- and family-level data. However, due to the low number of diatom families, it is likely that families do not provide enough variability in biodiversity patterns. Thus, for diatoms, genus-level data could perhaps be more efficient than family-level data in correlating with species-level data and portraying assemblage patterns for conservation purposes.     

Surrogate measures for assessing cryptic faunal biodiversity on macroalgal-dominated subtidal reefs

A major impediment to the identification of priority areas for marine biodiversity conservation is a fundamental lack of information about the distribution of many marine species. Comprehensive species inventories for many areas currently do not exist, and performing detailed taxonomic surveys is often prohibitively expensive and time-consuming. Accordingly, there is a need to develop simple and reliable rapid-assessment techniques for mapping marine biodiversity. One potential approach is to use ‘surrogates’ that function as proxies for the distribution of other, less easily sampled, ‘cryptic’ biota. Two potential surrogates for predicting arthropod faunal biodiversity on rock subtidal reefs were investigated in this study: (1) macroalgae, and (2) faunal subsets derived by aggregating the arthropod fauna at higher taxonomic levels. Faunal and macroalgal assemblage composition was only weakly correlated across sites reflecting broad faunal responses to changes in algal structural complexity and/or common environmental gradients. This suggests that algal species composition may not be very informative in mapping patterns of faunal species distribution on reefs. Instead, the best surrogates were related (i.e. nested), subsets of the faunal assemblages such as family-level taxon richness which was found to be a good predictor of arthropod species richness at independent test sites.     

Magnitude of Species Diversity Effect on Aboveground Plant Biomass Increases Through Successional Time of Abandoned Farmlands on the Eastern Tibetan Plateau of China

Recent empirical and theoretical studies have shown that magnitude and direction of biodiversity effects on ecosystem functioning can shifts over time. Here, we used species richness and plant abundance (total individual plant stem density) as proxies for species diversity and aboveground biomass for productivity. We used an analytical approach combining both chronosequence and 6 year of vegetation monitoring in a subalpine ecosystem as a model system to assess temporal species richness–abundance–aboveground biomass relationships at different successional stages and spatial scales. We observed that both species richness and plant aboveground biomass increased rapidly early in succession after land abandonment, then after 10 years of abandonment reached a steady state. We found that the relationship between species richness and plant abundance with aboveground biomass was strengthening over successional time. In all successional stages, species richness had stronger positive effects as compared with plant abundance on plant aboveground biomass. Species richness was linearly correlated with aboveground biomass, whereas plant abundance showed a humped‐back relationship with aboveground biomass across all successional stages. Our results showed an increase in the effect of plant diversity over time, and a combination of both plant species richness and abundance is correlated with plant productivity throughout successional time, knowledge that maybe important to managing ecological restoration and conservation. Copyright © 2016 John Wiley & Sons, Ltd.     

Woodpeckers as reliable indicators of bird richness, forest health and harvest

Woodpeckers (family Picidae) show promise as indicators of avian diversity in forests because their populations can be reliably monitored, and their foraging and nesting activities can positively influence the abundance and richness of other forest birds. A correlation between woodpecker richness and richness of forest birds is known to exist at the landscape scale, but uncertainty remains whether this correlation occurs at the smaller stand-level spatial scales where forest management activities take place. We used data collected under a diverse range of forest types, harvest treatments, and forest health conditions during a long-term study of bird communities in interior British Columbia, Canada, to examine two basic questions: (1) at the level of individual forest stands, is woodpecker richness correlated with bird richness (measured as richness of all other bird species)? and (2) do woodpecker richness and bird richness have similar habitat correlates? Bird richness was positively correlated with woodpecker richness (β = 0.59, SE = 0.22, 95% CI = [0.14 1.03]). Richness of both woodpeckers and all other birds were positively correlated with tree species richness and negatively correlated with density of pines, and the effect for forest harvest type was similar for both measures of avian richness (uncut < partial harvest < clearcut with reserves). The effect of density of lodgepole pines killed by mountain pine beetles differed between the two richness measures, being positive for woodpecker richness and negative for forest bird richness. We conclude that the richness of woodpeckers is indeed correlated with the richness of other birds at the stand-level, and can serve as a reliable indicator of overall bird richness in most forest stands and conditions, except during insect outbreaks when differential responses by woodpeckers and the rest of the avian community may decouple the relationship between bird richness and woodpecker richness.     

Response of a desert lizard community to habitat degradation: Do ideas about habitat specialists/generalists hold?

We report the impact of human-induced desertification on the species richness, abundance, and composition of sand dune flora and herpetofauna of North Sinai, Egypt. Our hypothesis was that degraded habitats would have reduced vegetation complexity, richness, and abundance, and consequently lower reptile species richness and abundance. We also hypothesized that desert lizards would not follow the typical generalist/specialist responses to habitat degradation found in other biomes. Instead, we predicted that because vegetation loss intensifies the environmental extremity of deserts, those species specialized for open and sandy environments would be more likely to persist in desertified habitats than would desert generalists. Our results showed that areas protected from vegetation loss did not have significantly higher vegetation richness or abundance except for only a few species. However, protected sites did have significantly higher percent vegetation cover and height. Habitat protection clearly had strong effects on the reptile community as species richness and abundances were significantly higher in protected sites. The composition of the reptile community between protected and unprotected sites differed significantly. Contrary to past studies in other environments, desert generalist species were not able to persist in degraded sites and were only found in protected sites. Specialist species were ubiquitous in that they occurred in both areas protected and unprotected from vegetation loss. We propose that the effects of disturbance on species composition (specialists or generalists) depends on whether the disturbance exacerbates or reduces environmental harshness and the conditions that favor specialization. In extreme environments, specialist and generalist responses to habitat degradation are opposite to that of more productive environments.     

Environmental monitoring using populations of birds and small mammals: Analyses of sampling effort

Characteristics of bird and small mammal communities can be valuable in monitoring for impacts on specific plots of land. In Utah (USA), significant differences were found among years, habitats and seasons in bird and small mammal abundance, species diversity, and species richness; thus, estimates of these characteristics are consistent and repeatable and can be used for detecting change. Also, bird and small mammal communities are dependent on a wide variety of food resources and habitat characteristics; thus they should reflect a variety of impacts.A comparison is made between two methods of handling bird data from transects: enumeration (individual birds per km) and density (birds per unit area). Correlation between the two was high (r = 0·93). However, density estimates may be necessary to trace an impact to a particular group, guild or species and possibly to its cause.An analysis is made of how much sampling is necessary to make an adequate estimate of the characteristics of bird and small mammal communities. Estimates of bird abundance, species richness and species diversity (from enumeration) may be obtained with three repetitions of 2 km of transect. Three repetitions are also sufficient to estimate abundance of small mammals on 12 by 12 trapping grids. To estimate species richness and species diversity, however, four or more repetitions are needed. Small mammal community characteristics are not well predicted by trapping on transects or small grids except in grids 9 by 9 or larger. These results of sampling effort may only apply to certain habitats but data from bird and small mammal communities should be useful in environmental monitoring at any site.     

Plant species richness and composition in managed grasslands: The relative importance of field management and environmental factors

Decline of grassland diversity throughout Europe within the last decades is threatening biological diversity and is a major conservation problem. There is an urgent need to determine the underlying factors that control vascular plant species richness and composition in managed grasslands. In this study, 117 grasslands were sampled using standardised methods. Explanatory variables were recorded for each grassland site, reflecting the local field management, site-specific environmental conditions and large-scale spatial trends. Using variation partitioning methods, we determined the pure and shared effects of these three sets of explanatory variables on the plant species richness and composition in grasslands. Most of the explained variation in plant species richness was related to the joint effect of local field management and environmental variables. However, the applied variation partitioning approach revealed that the pure effect of spatial variables contributed relatively little to explaining variation in both the plant species richness and species composition. The largest fractions of explained variation in plant species composition were accounted for by the pure effects of environmental and local field management variables. Moreover, the results revealed that the main mechanisms by which these sets of explanatory variables affect plant species vary according to the type of management regime under study. From our findings we could conclude that particularly a reduction of nitrogen fertilisation on meadows and grazing at a low stocking rate on pastures can help to conserve biodiversity.     

Relationships between avian diversity, neighborhood age, income, and environmental characteristics of an urban landscape

Maintaining biodiversity in urbanizing landscapes has become a top conservation priority. We examined variation in bird communities across a diverse array of urban and suburban neighborhoods in the Chicago, Illinois, metropolitan region. Rather than taking the usual approach of focusing solely on natural features of the urban landscape, we investigated how urban bird communities were related to neighborhood age and income, as well as environmental characteristics. We found that median housing age was strongly related to avian species richness, with newer neighborhoods supporting more species. Housing age was an important correlate of abundance for several species as well as abundance of exotic, migratory, and non-migratory species groups. Per capita income was inversely related to richness of native bird species and positively related to exotic richness. Total richness was higher in urban sites with undeveloped patches and heterogeneous land cover types; moreover, richness decreased with increasing distance from natural areas greater than 1 km². Our findings suggest that bird richness is enhanced both by small patches of natural land within the urban matrix and by close proximity to large natural preserves. Furthermore, these results suggest that investigating a combination of abiotic and environmental features of the built landscape, rather than focusing solely on environmental features, may provide a more complete understanding of the factors influencing avian diversity in human-dominated landscapes.     

Influence of drought and litter age on Collembola communities

A field experiment was carried out to study the impact of drought and litter quality on the structure and performance of collembolan communities. The hypothesis was tested that changes in substrate humidity and resource quality significantly influence decomposition processes via alterations in soil faunal community structure. Litterbags (1000 μm mesh size) containing either freshly fallen or aged spruce litter were placed on the floor of a German spruce forest for one year. The bags were exposed to either ambient conditions (control) or drought (covered with roofs). Drought-induced changes in biological parameters were associated with a strong reduction in decomposition rates. Moreover, drought stress decreased Collembola abundance and species richness. The influence of drought on some microbiological parameters strongly depended on the litter age. A comparison of the two litter treatments revealed major effects of litter age on microbiological and physico-chemical parameters, but no effects on Collembola abundance and species richness. A detailed analysis of the collembolan community structure showed that certain species are highly adapted to specific characteristics of the substrate and thus rapidly respond to changes in microhabitat conditions.     

Correlation between Microcrustaceans and Environmental Variables along an Acidification Gradient in Sudbury, Canada

Multivariate methods were used to relate microcrustacean (pelagic and littoral) richness and composition (presence/absence) to water quality and other environmental variables. All acidification variables (pH, aluminium, ANC) showed significant correlation with both species richness and composition. The variation in microcrustacean richness was best explained by the combination of dissolved organic carbon (DOC), fish species richness and lake area. Of 16 variables tested, pH showed strongest correlation with the main gradient in the crustacean composition explaining between 13 and 16% of the variance in the species data (CCA). pH, elevation, lake area, average depth, DOC, conductivity and fish species richness explained 30–54% of the total variance. Stronger correlation was obtained between species composition and environmental data in analyses which included the between-year differences than analyses based on the cumulative species records. Analyses based on the pelagic species exclusively gave similarly stronger correlation than analyses based on all crustacean species. Small changes in the species composition during the three years of study may be an indication of recovery of microcrustaceans in Killarney lakes.     

Invertebrate biodiversity under hot rocks: habitat use by the fauna of sandstone outcrops in the Sydney region

Loose surface rocks on sandstone outcrops in coastal eastern Australia are subject to high levels of anthropogenic disturbance. The endangered reptiles that use these rocks as shelter-sites have attracted considerable research, but the invertebrate fauna under the same rocks has been neglected. We surveyed four sites in the Sydney region, to record the invertebrate fauna under a total of 240 rocks and quantify habitat associations of these animals. Fauna were present under almost 90% of surveyed rocks, with high overall abundance and species richness (up to seven species per rock). Our sampling regime was inadequate to fully characterise the sandstone invertebrate fauna, and thus substantially underestimates diversity on a broader spatial scale. The taxa covered a broad phylogenetic range, with ants and spiders the most abundant, widespread and species-rich lineages. The assemblage was dominated by predators and opportunistic scavengers, possibly reflecting the characteristic low productivity of these systems. Canonical correspondence analysis identified consistent linkages between specific faunal groups and microhabitat features (mainly substrate, also degree of shading and characteristics of the overlying rock). We conclude that surface rocks on Hawkesbury sandstone outcrops shelter a diverse and abundant invertebrate fauna, that microhabitat features influence faunal composition, and that our ignorance of this component of biodiversity will severely hamper any rational plan to conserve these distinctive and highly threatened ecosystems.     

Complementarity among sampling methods for harvestman assemblages

Tropical arthropod surveys generally use a combination of complementary sampling methods to increase the detection of species and individuals, and to decrease the number of singletons. However, given the high arthropod abundance and the taxonomic challenges of arthropod surveys, the combination of different sampling methods may be inefficient and may increase survey costs. Harvestmen were sampled using beating tray, nocturnal search, leaf-litter manual sorting and Winkler apparatus in 70 plots distributed in two areas in Central Amazonia. Every sampled method documented different assemblages, and only the nocturnal search method proved to be efficient in representing both harvestmen richness and composition. Given the data collected from leaf-litter manual sorting, Winkler apparatus and beating tray can be used in inventories to increase the number of species collected, but may be less useful for applied or monitoring studies. Although pooling data from three methods was effective to obtain an overview of species richness, it may not be the more efficient strategy for studies of assemblage associations with environmental variables. As each method may sample distinct assemblages that have different responses to the surrounding environment, pooling data from these different methods may obfuscate patterns of assemblage composition related to environmental factors instead of clarifying them.     

Amphibian distribution in a traditionally managed rural landscape of Eastern Europe: Probing the effect of landscape composition

A massive decline of biodiversity is caused by land-use changes. Efforts must therefore be made to better understand the factors that govern organismal distribution, especially for countries where traditional management is about to be intensified such as in Romania. We here document the spatial distribution of amphibians from a Romanian rural landscape where land-use is still largely traditional. We related the occurrence of nine amphibian species and species richness to measures of composition and configuration of the landscape surrounding 54 ponds at three spatial scales: circular areas of 400, 600 and 800 m radii. Busy roads most severely impacted single species and amphibian richness whereas landscape composition measures, such as cover of urban areas, agricultural areas, pastures, forests and wetlands were of little importance. We suggest that the relative unimportance of landscape compositional measures on amphibians is a consequence of the traditional management of these landscapes that keep the environmental conditions favorable for most species.     

Properties of land mosaics: Implications for nature conservation in agricultural environments

Agricultural landscapes are mosaics of different land uses. Their vast extent throughout the world means that they have a key role in the conservation of biodiversity. To provide a sound basis for management, it is important to recognise the emergent properties of land mosaics and understand how they influence components of biodiversity. In most studies in agricultural landscapes, inference is restricted to single sites or patches because this is the unit used for sampling and analysis. For mosaic-level inference, sampling must encompass multiple land uses and elements within a mosaic, be aggregated to represent the ‘whole’ mosaic, and be replicated across multiple mosaics. This paper reviews studies in which land mosaics are the unit of replication, to identify the influence on biota of three categories of emergent properties of mosaic structure: the extent of habitat, composition of the mosaic and spatial configuration of elements. The extent of habitat is usually a dominant influence on the occurrence of single species or the richness of assemblages defined by habitat type (e.g., forest birds). The composition of the mosaic, based on the proportions of elements present, strongly influences the species composition of faunal assemblages. Heterogeneity or diversity of elements is often positively correlated with the richness of taxonomic assemblages. In studies that separate the independent effects of emergent properties, spatial configuration generally exerts less influence on biota than extent or composition. A fourth property, the geographic position or environmental variation among land mosaics, also significantly affects the status of the fauna in many studies. Temporal persistence of species and turnover in assemblages in agricultural landscapes are also influenced by the structure of the land mosaic, but there are few long-term data sets that allow comparison of temporal changes with mosaic properties. There is great scope for further investigation of the properties of mosaics and the mechanisms by which they affect the conservation of biodiversity. This includes studies of responses from a wider range of biota (in addition to birds), investigation of spatial scale effects on faunal responses, temporal responses of the fauna to change in mosaic structure (and potential time-lags in response), and the effects of variation in mosaic structure on population demography and ecological processes.     

Spatial covariation of Azotobacter abundance and soil properties: A case study using the wavelet transform

The soil microflora is very heterogeneous in its spatial distribution. The origins of this heterogeneity and its significance for soil function are not well understood. A problem for understanding spatial variation better is the assumption of statistical stationarity that is made in most of the statistical methods used to assess it. These assumptions are made explicit in geostatistical methods that have been increasingly used by soil biologists in recent years. Geostatistical methods are powerful, particularly for local prediction, but they require the assumption that the variability of a property of interest is spatially uniform, which is not always plausible given what is known about the complexity of the soil microflora and the soil environment. We have used the wavelet transform, a relatively new innovation in mathematical analysis, to investigate the spatial variation of abundance of Azotobacter in the soil of a typical agricultural landscape. The wavelet transform entails no assumptions of stationarity and is well suited to the analysis of variables that show intermittent or transient features at different spatial scales.In this study, we computed cross-variograms of Azotobacter abundance with the pH, water content and loss on ignition of the soil. These revealed scale-dependent covariation in all cases. The wavelet transform also showed that the correlation of Azotobacter abundance with all three soil properties depended on spatial scale, the correlation generally increased with spatial scale and was only significantly different from zero at some scales. However, the wavelet analysis also allowed us to show how the correlation changed across the landscape. For example, at one scale Azotobacter abundance was strongly correlated with pH in part of the transect, and not with soil water content, but this was reversed elsewhere on the transect.The results show how scale-dependent variation of potentially limiting environmental factors can induce a complex spatial pattern of abundance in a soil organism. The geostatistical methods that we used here make assumptions that are not consistent with the spatial changes in the covariation of these properties that our wavelet analysis has shown. This suggests that the wavelet transform is a powerful tool for future investigation of the spatial structure and function of soil biota.     

Scale-dependent homogenization: Changes in breeding bird diversity in the Netherlands over a 25-year period

Changes in breeding bird diversity in the Netherlands between 1973-1977 and 1998-2000 were evaluated by testing three hypotheses related to the loss of biodiversity: (1) species diversity is declining, (2) biotic homogenization is increasing and (3) rare species are declining more severely than abundant species. Using data collected for two successive national breeding bird atlases, changes in diversity were assessed at different spatial scales (local, regional and national) and among species characteristic for different landscapes (farmland, woodland, heathland, wetland, coastal habitats and urban habitats). National species richness, diversity and equitability had increased between the two atlas periods, with more species increasing than decreasing in range and abundance. Most species in the large groups of woodland and wetland birds showed positive trends, whereas most in the smaller groups of heathland, reed-breeding and meadow birds showed negative trends. However, findings varied between regions and localities. Increases in species richness occurred mainly in regions in the low-lying, western part of the country which were previously relatively poor in species. By contrast, species richness decreased in some previously species-rich regions in the eastern part of the country. This has resulted in a homogenization of breeding bird communities between regions. We advocate the conservation and restoration of regional identity as a priority for landscape planning in the Netherlands. We did not find a clear relation between species abundance and trends, although both rare and very abundant species tended to decrease on average.     

Diversity declines in Microstegium vimineum (Japanese stiltgrass) patches

The spread of invasive plant species and their impacts on plant communities have received international attention as global trade and global environmental change enhance the colonization and establishment of introduced species and threaten the integrity of native ecosystems. Because introduced species vary in their impact, studying the relationship between invasion and native communities is necessary to guide allocation of finite management resources. By studying adjacent pairs of invaded and uninvaded plots across an eastern United States forested landscape, we demonstrate Microstegium vimineum was associated with local declines in species richness and cover of native species. Negative impacts of M. vimineum on species richness did not emerge until August when M. vimineum cover and height were greatest, highlighting the value of following study subjects through the growing season. In contrast, native species cover was already lower in invaded plots early in the growing season. M. vimineum invasion was not the only important driver of species richness and community composition within the study region; abiotic environmental gradients, such as soil nitrate concentration and pH, across the six study sites were also important in affecting species richness and cover, but lessened in explanatory power through the growing season. We conclude that M. vimineum has effects on community structure that may have long-term consequences for biodiversity. Studies which track sites through time and consider multiple scales are required as invaders impact multiple biotic and abiotic factors operating at different spatial and temporal scales.