Competition for shifting resources in the southern Benguela upwelling: Seabirds versus purse-seine fisheries

In the southern Benguela upwelling ecosystem off the west coast of South Africa, seabird populations are decreasing dramatically because of reduced availability of pelagic fish. We tested the hypothesis that the west coast fishing industry is competing for the remaining stocks of anchovy and sardine with the largest colony of Vulnerable Cape Gannets (Morus capensis) along the Atlantic coast. Using GPS-tracking of the birds, echo-sounding of pelagic fish, and vessel log books, we located overlap areas between bird foraging ranges, pelagic fish distribution, and fishing activities. We then compared fish catches by gannets and vessels within their joint foraging zones. In October 2007, purse-seine fishing grounds and gannet foraging areas overlapped by only 13%. However, for a 1-month period, the amount of fish removed from this area by purse-seine boats amounted to 41% of the food requirements of the 72,000 gannets breeding on Malgas Island (25% of the world population). The fishery’s catch in this area is significant in terms of its potential impact on gannets, but comprises only 3.6% of total fishery catch. Based on this finding, the rapidly decreasing size of the gannet colony and the stated objectives of South Africa’s Marine Living Resources Act of 1998, the case for considering and experimenting with at-sea ‘no-take’ areas for the purse-seine fishery is strong. Efforts to establish whether ‘no-take’ fishing zones increase food availability for top predators is an important next step in conservation of the southern Benguela Ecosystem.     

Multi-trophic consequences of kelp harvest

Coastal kelp forest ecosystems provide important habitats for a diverse assemblage of invertebrates, fish and marine top-predators such as seabirds and sea mammals. Although kelp is harvested industrially on a worldwide scale little is known about the multi-trophic consequences of this habitat removal. We investigated how kelp fisheries, which remove feeding and nursery grounds of coastal fish, influence local food webs and the availability of food to a marine top predator, the great cormorant (Phalacrocorax carbo). We conducted experimental harvesting of the canopy-forming kelp (Laminaria hyperborea) during a 3 year period (2001-2003) in an area at the coast of Central Norway while synoptically monitoring fish occurrence and cormorant foraging parameters. Our results demonstrate that cormorants preferentially foraged within kelp-forested areas and performed significantly more dives when feeding in harvested versus un-harvested areas suggesting lower foraging yield in the former case. In kelp areas that were newly harvested the number of small (<15 cm) gadid fish was 92% lower than in un-harvested areas. This effect was persistent for at least 1 year following harvest. To our knowledge, this is the first time that the ecological consequences of kelp harvesting have been tested at a multi-trophic level. The results presented strongly suggest that kelp harvesting affects fish abundance and diminishes coastal seabird foraging efficiency. Kelp fisheries are currently managed in order to maximize the net harvest of kelp biomass, and the underlying effects on the ecosystems are partly ignored. This study calls for re-assessment of such management practices.     

Observations on the effects of low-flying aircraft at seabird colonies on the coast of Aberdeenshire,Scotland

The greatly increased use of helicopters and fixed-wing aircraft to support the exploration and exploitation of oilfields in the North Sea gives rise to concern about possible disturbance to seabirds breeding in the flight paths. The observations reported in this paper were made at a mixed colony of fulmars (Fulmarus glacialis), shags (Phalacrocorax aristotelis), herring gulls (Larus argentatus), kittiwakes (Rissa tridactyla), guillemots (Uria aalge), razorbills (Alca torda), and puffins (Fratercula arctica), breeding on the Buchan cliffs about 40 km north of Aberdeen, on two days during egg-laying and early nestling stages of the breeding season.The number of birds in attendance at nests or nesting ledges were counted before and after the passage of aircraft, and general observations were made when the planes were overhead. The number of identifiable nests with 0, 1 or 2 adults was noted since disturbance might be most sensitively detected by the departure of non-incubating/brooding adults.No evidence was found to suggest that aircraft flying at heights of about 100 m above the cliff-top affected the attendance of incubating and brooding birds, and there was only a slight indication that a few of the ‘second adults’ at kittiwake nests may have flown off. Groups of kittiwakes resting on nearby cliffs or on the sea did take to the air in response to the planes, but they also did so frequently in the course of the day with no obvious cause. It is stressed that these findings cannot be extrapolated to other species of seabirds or to different conditions.     

The influence of food availability on breeding success of African penguins Spheniscus demersus at Robben Island, South Africa

From 1989 to 2004, the breeding success of African penguins Spheniscus demersus at Robben Island, South Africa was significantly related to estimates of the abundance of both their main prey species, anchovy Engraulis encrasicolus and sardine Sardinops sagax, and to the combined biomass of these species. When the combined spawner biomass of fish prey was less than 2 million ton, pairs fledged an average of 0.46 chicks annually. When it was above 2 million ton, annual breeding success had a mean value of 0.73 chicks per pair. Given previously estimated values of survival and age at first breeding, these levels of breeding success are inadequate to sustain the African penguin population. With the higher level of breeding success, an equilibrium situation might be attained if adult survival could be increased by 6-7% per annum. Attempts to reduce mortality of penguins have included the collection, cleaning and return to the wild of oiled birds, culling of Cape fur seals Arctocephalus pusillus pusillus seen preying on penguins around breeding localities and control of the spread of disease. Management of the purse-seine fishery should ensure adequate escapement of fish to maintain the combined biomass of anchovy and sardine above 2 million ton. The maintenance of suitable breeding habitat and removal of feral predators from breeding localities will also be important in improving breeding success.     

Collection and evaluation of Primula species of western Sichuan in China

China is known as a major distribution center for the genus Primula, with a total account of 300 species out of the 430 species reported in the world. Western Sichuan is considered as an important area of diversity of Primula, approximately accounting for 40 % of the total found in the country. This paper focused on the distribution, classification, and evaluation of the Primula species collected from western Sichuan. A total of 29 species, four subspecies, and one variety were collected, identified, and classified based on their morphological characteristics. We also discovered some plants with different flower colors within the same species, which may be representative of new forms or ecotypes. Analytical hierarchy process (AHP) method through 14 indicator points was first used to evaluate the collected Primula resources based on their ornamental value, utilization potential, and ecological adaptability. The results indicated that P. denticulata subsp. sinodenticulata received the highest AHP scores making it the most potential species for sustainable exploitation. In addition, P. chionantha subsp. sinopurpurea, P. szechuanica, P. orbicularis, P. sikkimensis, P. hongshanensis, P. secundiflora, P. sonchifolia, P. polyneura, P. wilsonii, P. palmata, P. poissonii and P. watsonii showed better potential for exploitation than other species. This study also gave some suggestions regarding the protection and utilization of wild Primula resources.     

History and present status of populations of harp and hooded seals

The biology of harp (Pagophilus groenlandicus Erxleben) and hooded (Cystophora cristata Erxleben) seals is described. These abundant species inhabit the seasonally-shifting pack ice of the North Atlantic. Intensive hunting over 150 years depleted but did not exterminate three harp seal populations, which initially may have totalled some 9 million animals and may now total some 3 millions. All are now hunted under quotas and other restrictions. One population is rising and the other two, while probably still declining slowly, are probably close to stability. Knowledge of hooded seals is less advanced; one of three major sub-populations has only recently been rediscovered after 150 years. These populations are more closely interconnected than populations of harp seals, and management of hooded seals seems likely to need a wider framework than exists at present.     

Symbiotic nitrogen contribution and biodiversity of root-nodule bacteria nodulating Psoralea species in the Cape Fynbos,South Africa

The genus Psoralea (tribe Psoraleae, family Leguminosae) is indigenous to the Cape fynbos of South Africa and little is known about its symbiosis and/or adaptation. The aim of this study was to assess root nodulation and N₂ fixation in eight of the 50 Psoralea species, as well as the biodiversity of their associated nodulating microsymbionts. The eight species studied (namely, Psoralea pinnata, Psoralea aphylla, Psoralea aculeata, Psoralea monophylla, Psoralea repens, Psoralea laxa, Psoralea asarina and Psoralea restioides) all had round-shaped, determinate type (desmodioid) nodules, and data from ¹⁵N natural abundance showed that they obtained 60–88% of their N nutrition from symbiotic fixation. These Psoralea species also transported their fixed-N as ureides (allantoin and allantoic acid) in the xylem stream, a symbiotic trait that links them very closely to the tribe Phaseoleae. Bacteria isolated from root nodules of the eight Psoralea species varied in phenotypic characteristics, nodulation promiscuity, and N₂-fixing efficacy. Furthermore, 16S rDNA gene sequence data showed that Psoralea species can form root nodules with different soil bacteria, including Rhizobium, Mesorhizobium and Burkholderia strains. This is not only evidence of nodulation promiscuity, but also an indication of the species’ adaptation to the nutrient-poor, low-N, sandy acidic soils of the Cape fynbos.     

The ecology of a Pythium community in relation to the epidemiology of carrot cavity spot

Carrot cavity spot (CCS) is characterised by the appearance of small sunken elliptical lesions on the tap root. It is caused by a complex of Pythium species, but the species diversity and interactions within the complex have never been studied for modelling CCS epidemics. The diversity of a pathogenic Pythium community was assessed during 3 consecutive years in a field experiment after an initial artificial soil infestation with P. violae. 1241 lesions were examined, yielding 728 Pythium isolates. Conventional microbiological methods and restriction polymorphism of the internal transcribed spacer regions of the rDNA of 209 representative Pythium isolates allowed us to identify 655 isolates as belonging to six Pythium species, including P. violae and five indigenous species (P. sulcatum, P. intermedium, P. sylvaticum/irregulare, P. coloratum, and P. ultimum). Biological traits, such as pathogenicity, optimum temperature for mycelial growth and saprophytic survival of the inoculum, explained the fluctuations in the composition of the complex over 17 successive samplings during the 3-year period, most notably the prevalence of first P. violae and then P. sulcatum. P. violae and P. sulcatum were occasionally isolated in mixture from single lesions (10.4% and 9.6%, respectively). Other species were more frequently isolated in mixture: 30.8% for P. intermedium, 33.8% for P. sylvaticum/irregulare, 42.9% for P. ultimum, and 66.7% for P. coloratum. A contingency analysis allowed us to define ‘major’ and ‘minor’ species on both pathological and ecological criteria (frequency of occurrence in the complex, pathogenicity and ability to induce lesions by themselves), and demonstrated that infection by one ‘major’ pathogen species (P. violae or P. sulcatum) is not positively correlated with the presence of a second Pythium species. The ratio between ‘observed’ and ‘expected’ mixed infection frequency under the assumption of independent infection (mir) was less than 1 for P. violae, P. sulcatum, P. intermedium, and P. sylvaticum/irregulare (P < 0.05). For all Pythium species, there was a negative linear relationship between mir and pathogenicity (R² = 0.638): the less a Pythium species was pathogenic on carrot, the more often it was isolated from a CCS lesion in mixture with at least one other species. The non-significance of interactions between species during the infection phase suggests that CCS epidemics can be analysed as if they were caused by a single Pythium species.     

Environmental uncertainty and commercial fishing: Effects on Peruvian guano birds

The roles of the El Niño phenomenon, a cessation of upwelling, and of human fishing in limiting populations of Peruvian guano birds (Guanay cormorant Phalacrocorax bougainvillii, Peruvian booby Sula variegata, and Peruvian brown pelican Pelecanus occidentalis thagus) were investigated using historical records and the scientific literature. In normal years, the combined populations of the three species showed an 18% increase per year. El Niños occurred at approximately five-year intervals and caused a population decrease of 17% and 35% desertion of nesting areas. In severe El Niños at approximately 12-year intervals, there was a mean decrease of 47% and complete nesting failure. El Niños varied in severity and a possible explanation is presented.In non-El Niño years, commercial fishing did not directly control bird populations through starvation of adults or drowning in nets. Increased commercial fishing apparently led to decreased nesting success: the greater the quantity of fish landed, the lower the percentage increase of the bird population that year.Short-lived, heavily-fished species such as anchoveta are in constant danger of population collapse during years of occasional, unpredictable reproductive failure. Bird populations could be maintained as buffers to prevent terminally-destructive overfishing by humans.     

Litter decomposition in fynbos vegetation,South Africa

The Western Cape of South Africa is characterized by the hyperdiverse vegetation of the Fynbos biome. Typical fynbos vegetation is a fire-adapted sclerophyllous Mediterranean-type ecosystem on poor, sandy or stony soils. It is characterized by plants with low nutrient content producing slowly decomposing litter. Fire is recognized as a major factor for carbon and nutrient cycling in this vegetation type. However, knowledge of biological decomposition processes in this biome is limited. We used litter-bags to measure mass loss and changes in chemical composition in litter from three species representing characteristic taxa in fynbos, a Protea exima hybrid, Erica multumbellifera, and Restio multiflorus, during approximately 180 days. In addition, we used a standard litter of a species with high nutrient content, Galenia africana, and a mixture of Protea and Erica. We compare our results with a previous study from renosterveld including the geophyte Watsonia borbonica, which occurs in both vegetation types and occurs commonly in the study area. We found that decomposition rate among the true fynbos plant species P. exima, E. multumbellifera, R. multiflorus and W. borbonica varied almost eight-fold. Litter decomposition was strongly correlated to litter stoichiometry, i.e. C/N and C/P-ratios. Most litters accumulated one or several nutrients during the study period. The mixture of litters decomposed faster than expected from the results of each litter separately. Our study indicates that biological decomposition may be more important for carbon and nutrient cycling in fynbos than previously thought. These results are in accordance with recent studies showing large variation in plant litter quality within vegetation types and biomes. Such large variation in litter quality and decomposition rate suggests that some generalisations about ecosystem processes in the fynbos may need reevaluation.     

Seabird mortality at trawler warp cables and a proposed mitigation measure: A case of study in Golfo San Jorge, Patagonia, Argentina

We studied the interaction between seabirds and warp cables in the high-seas Argentine hake Merluccius hubbsi trawl fishery operating in Golfo San Jorge, Argentina, and tested the efficacy of a simple mitigation measure designed to reduce mortality at warp cables. Observations were made onboard hake trawlers during the height of the fishing season, between December 2004 and April 2005. Thirteen seabird species used food made available by fishing operations. The most frequent and abundant seabirds (% occurrence, mean maximum number per haul) were the Kelp gull Larus dominicanus (98.1%, 348.5) and the Black-browed albatross Thalassarche melanophrys (96.1%, 132.2). Contacts with warp cables were recorded for six species in 81.4% of hauls, with a mean number of contacts per haul of 14.4 ± 23.8 (range = 0-127). A total of 53 individuals were killed due to interactions with nets and cables, resulting in a total cable mortality rate of 0.14 birds/haul. Considering the fishery’s fishing effort, the estimated total number of birds killed during the study was 2703 (CV = 0.8), of which 306 (CV = 0.9) were killed due to contacts with warp cables (255 Kelp gulls and 51 Black-browed albatross). The tested device consisted of a plastic cone attached to each warp cable. In hauls with mitigation device, the number of contacts was reduced by 89% and no seabirds were killed. Mean distances between seabirds and cables were significantly larger in hauls with than without mitigation device (2.6 vs 0.9 m). The proposed device could be easily applied in this and other trawl fisheries operating in Argentine waters. Increased effort should be placed in implementing mitigation measures and the monitoring of cable related mortality associated to high-seas trawlers operating in the Argentine Continental Shelf.     

The Prince Edward Islands: A sanctuary for seabirds in the Southern Ocean

This paper reviews the breeding distribution and numerical status of selected species of seabirds at 23 oceanic island groups in the Southern Ocean (between latitudes 35 and 70°S), based on census data and population estimates which have become available through increased scientific endeavour in the region during the last 15 years or so. The paper focuses on the avifauna of the Prince Edward islands, in the southern Indian Ocean, and points to the importance of these islands as a breeding station and sanctuary for seabirds. Only one oceanic island group, the Crozets, contains more species of breeding seabirds than the Prince Edward islands. Substantial segements (about 10% and greater) of the world breeding populations of the king and macaroni penguins, and the wandering, grey-headed, yellow-nosed and sooty albatrosses are based at the Prince Edward group. We recommend that Prince Edward Island (sensu stricto) should be a wilderness area, and that development at Marion Island should be kept to an absolute minimum.     

Species-specific impacts of collembola grazing on fungal foraging ecology

Fungi are primary agents of organic matter decomposition in forests. Although invertebrate grazing affects fungal biomass and morphology, the species-specific consequences of these interactions are little understood. Using three collembola species (Folsomia candida, Protaphorura armata, Proisotoma minuta) we employed a multi-trophic approach to investigate the individual effects of invertebrate grazing on four species of saprotrophic basidiomycete fungi growing in two species (one fungus: one collembola) soil microcosms. We studied these effects at three trophic levels: the rate of wood decay brought about by the fungi was assessed; fungal growth was characterized across multiple time points using a range of image analysis parameters (radial extension, hyphal coverage, fractal dimension); and collembola abundance was determined at the end of the experiment. Collembola species had different impacts both within and across fungal species; F. candida had the greatest effect on fungal mycelia whereas P. armata often had little impact. Fungal species varied in their resilience to grazing; all collembola species modified Phanerochaete velutina and Hypholoma fasciculare morphology, that of Resinicium bicolor was only markedly affected by F. candida, and effects on Phallus impudicus were negligible. In the case of H. fasciculare, these grazing effects translated into effects on the rate of fungus-induced wood decay: F. candida and P. armata, but not P. minuta, reduced wood decay rate compared to ungrazed controls. Rate of wood decay was unaffected in the other three fungal species. Changes in collembola population size were generally consistent across fungal species, with each species achieving a greater abundance on P. velutina than on H. fasciculare and P. impudicus. The collembola species did, however, respond differently to R. bicolor, with F. candida being more successful than P. armata. Our study suggests that a wide range of impacts can occur during fungus–collembola interactions, and that caution should be exercised when treating saprotrophic fungi and mycophagous collembola as uniform functional components.     

The Impact of Penguins on the Content of Trace Elements and Nutrients in Coastal Soils of North Western Chile and the Antarctic Peninsula Area

In isolated areas without direct human impact where several species of seabirds nest, transformations affecting the soil come mainly from natural processes, such as chemical enrichment caused by seabirds. Penguins constitute an important bird biomass in the Southern Hemisphere, where they breed in colonies on different sites from 100 to thousands of individuals. The accumulation of trace elements and nutrients in soils within two perennial colonies of Humboldt penguins (Spheniscus humboldti) located in north western Chile and three colonies of Adélie penguins (Pygoscelis adeliae) in the Antarctic Peninsula area were investigated here. Surface soil samples were collected directly from nesting sites. Control samples were taken outside the colonies within sites adjacent to the nesting areas, but not affected by bird excrement. The contents of Cd, Co, Cr, Cu, Mo, Ni, Sr, V and Zn were determined by inductively coupled plasma optical emission spectrometry. Ammonium (NH₄) and nitrate (NO₃) ions were determined colorimetrically. Extractable potassium (K) was determined by flame emission spectrometry, and available phosphorus (Olsen-P) was determined by spectrophotometry. The highest concentrations of trace metals (Cd, Co, Cr, Cu, Mo, V and Zn) and macronutrients (available N, K and P), along with an increase in salinity and acidity levels, were found directly below the seabird colony, a situation occurring in northern Chile as well as in the Antarctic Peninsula area, highlighting the role that penguins have as bio-vectors on generating geochemical changes in different ecosystems. Some terrestrial plants and animals that live near those penguin colonies might be affected at a greater level than the organisms that live in sites similar but distant from colonies of birds. New data about the role of these species of seabirds as bio-vectors of chemical contaminants are added.     

Adaptation of some introduced eragrostis species to calcareous soil and acid mine spoil

Abstract

Plant growth is frequently limited by Fe‐related chlorosis on calcareous soils and by mineral toxicities on strongly acid soils and mine spoils. Better adapted varieties are needed for both soil situations, which are not always economically correctable. In a search for such geraplasm, 4 species (20 accessions) of Eragrostis were grown in greenhouse pots of a calcareous soil at pH 7.3. Two species were also compared on acid mine spoil at pH 3.5 and 4.7.

Species, and accessions within species, differed significantly in tolerance to the calcareous soil, as measured by susceptibility to chlorosis and yield of plant tops. The range in top yield was 11‐fold for accessions of Eragrostis capensis, 3‐fold for Eragrostis lehmanniana, and 1.7‐fold for Eragrostis superba. Eragrostis plana (P.I. 364340) was more tolerant to acid mine spoil (pH 3.5) but less tolerant to calcareous soil (pH 7.3) than Eragrostis superba (P.I. 364833).

Chlorosis and poor growth of certain accessions on calcareous soil (pH 7.3) were not explained by specific mineral deficiencies or toxicities. However, the tops of chlorosis‐susceptible accessions had lower ratios of Fe/Mn, Fe/Zn, and Fe/Cu than those of chlorosis‐resistant accessions. This imbalance is believed to interfere with Fe metabolism in plant tops.

Results suggested that superior strains of Eragrostis species can be selected for adaptation to calcareous or acid soils and that certain accessions characterized in these studies can be useful in studying the physiological mechanisms of mineral stress resistance in plants.     

Reducing seabird bycatch in longline fisheries using a natural olfactory deterrent

Longline fisheries throughout the world have frequent and often fatal interactions with seabirds. We experimentally tested one possible solution to seabird-fisheries interactions that was proposed by a New Zealand longline fisherman. This involved dripping school shark Galeorhinus galeus liver oil on the ocean surface behind fishing vessels. We tested the efficacy of shark liver oil in reducing the numbers of seabirds attending fishing vessels and the number of dives seabirds executed in pursuit of pilchard Sardinops neopilchardus baits. We conducted trials in northern New Zealand where seabird assemblages include the globally vulnerable black petrel Procellaria parkinsoni. Shark liver oil was effective in reducing both seabird numbers and dives on baits, compared to canola oil and seawater control treatments. Comparisons of seabird responses to shark liver oil and vegetable oil suggest that shark liver oil acts as an olfactory or chemesthetic deterrent for seabirds. Further work should include testing the oil with additional seabird species and investigating active ingredients and habituation of seabirds to the oil in order to assess wider opportunities for long-term use of shark liver oil to reduce seabird bycatch.     

Abundance of the Hawaiian monk seal in the main Hawaiian Islands

Most of the extant circa 1400 Hawaiian monk seals Monachus schauinslandi live in the Northwestern Hawaiian Islands (NWHI). However, an increasing number of sightings and births have recently occurred in the main Hawaiian Islands (MHI), where no systematic surveys of monk seals were conducted prior to 2000. We estimate that there were at least 45 seals in the MHI in 2000 and at least 52 in 2001, based on aerial surveys of all MHI coastlines, supplemented by sightings of seals from the ground. Moreover, annual births in the MHI have evidently increased since the mid-1990s. Weaned pups in the MHI are longer and have greater girth than those in the NWHI, perhaps reflecting greater per-capita abundance of prey resources. We think that Hawaiian monk seals have recently re-colonized the MHI, which were a very likely part of their historic range. Regardless, the MHI habitat appears to be favorable for continued increases of this endangered species.     

Phocine distemper virus in the North and European Seas - Data and models, nature and nurture

Two outbreaks of phocine distemper have severely affected harbour seal (Phoca vitulina) populations in European and UK waters. The first occurred in 1988 when the causative virus was identified as a new member of the genus morbillivirus. The second outbreak in 2002 was first detected on the same Danish Island of Anholt and involved similar populations and geographical locations. However, despite the obvious similarities between the epidemics, differences in viral transmission and case mortality were found. Harbour seals are highly susceptible to infection while sympatric grey seals (Halichoerus grypus) are resistant but could be important asymptomatic carriers of the disease. Arctic phocid seals remain the most likely source of the virus and grey seals could be the link between these primary hosts and the harbour seal populations further south. Future epidemiological models should therefore consider including multiple host species. The future conservation and management of harbour seal populations vulnerable to PDV relies on the ability to accurately predict the long-term impact on population abundance and distribution. Although knowledge about the behaviour and pathogenesis of the virus has increased substantially and data on host movements and contact rates are accumulating, studies into the determinants of the host range have lagged behind. The development of more realistic epidemiological models should be combined with studies into the factors controlling species and individual susceptibility. Assessing the risk of infection to endangered but currently unexposed potential host species (such as the Hawaiian monk seal, Monachus schauinslandi) is essential for guiding potential conservation management options, such as vaccination     

Current status of rodents on islands in the Gulf of California

On islands in the Gulf of California, many species and subspecies of rodents are relict species, restricted to the islands, and now considered extinct or verging on extinction. From 1991 to 1999, each island was surveyed and an average of 15 work-nights were spent on each island, for a total of 15,000 trap-nights. A Fourier series was used to estimate population density. Five native taxa are now considered extinct (Chaetodipus baileyi fornicatus, Peromyscus guardia mejiae, P. g. harbinsoni, P. pembertoni, and Neotoma bunkeri). Two species are at risk of extinction (Dipodomys insularis and Neotoma albigula varia). The most probable cause for extinction is the introduction of nonnative species, specifically cats. We believe that the most vulnerable rodent populations of the islands in the Gulf of California to non-native species are Neotoma lepida latirostra on Danzante island and Neotoma lepida abbreviata on San Francisco island, both in the state of Baja California Sur.     

Diversity and evolution of major Panax species revealed by scanning the entire chloroplast intergenic spacer sequences

Ginseng is an important medicinal plant, but almost no genomic information is known for it. For the primary step to understand the Panax genome, we inspected the chloroplast genome sequence diversity and used that to infer the evolution of Panax species using them. We inspected a total of 101 intergenic spacers (IGS) covering 44,563 bp (96.8 % of the total IGS) from four Panax species. Diversity was inspected by three steps: gel electrophoresis, high resolution melting (HRM) analysis, and further confirmation by sequencing. Even though low levels of InDel polymorphism were detected by gel electrophoresis, high levels of reproducible polymorphisms were identified by HRM analysis. Sequencing of the HRM-polymorphic spaces and pair-wise multiple sequence alignments revealed up to 247 sequence variations between species. We have identified 62 IGS showing polymorphism between species. Among them, the trnE-trnT, trnT-psbD, ndhF-rpl32, and rpl14-rpl16 spaces are more informative for studying the diversity of Panax relatives. Phylogenetic analysis and molecular evolution studies revealed that P. notoginseng is most diverged from the other Panax species, with a nucleotide substitution rate of 0.0039. P. quinquefolius shows a close relationship with P. ginseng and P. japonicus, with a nucleotide substitution rate of 0.0009. Meanwhile, no sequence variation was detected between P. ginseng and P. japonicus. Calculation of molecular clocks revealed that P. notoginseng diverged more than 1.30 million years ago from the other Panax species and then, P. quinquefolius diverged from P. ginseng by migration in the American continent more than 0.29 million years ago.