Parallel speciation, despeciation and respeciation: implications for species definition

Can the same species arise more than once in different places or at different times? Can a species go extinct by hybridization? If so, can it reappear afterwards? Biologists are used to thinking about species as historical events. They arise once (speciation), exist for a certain time (undergoing stasis or anagenetic change) and then disappear (extinction). Some people even like to think of them as ‘individuals’, although, whether the use of the technical philosophical definition of this word is helpful to many biologists, is perhaps debatable. By and large, our observations of real animal species are not at all incompatible with these ideas. But, recent studies on fishes are suggesting that we may need to rethink our views of the life of a species to include the concepts of parallel speciation, despeciation and respeciation.The ideas I discuss in this paper are not necessarily new, but many fish biologists, like myself, may not have found any particular reason to consider them until recently. There is a very large literature on species concepts, and in a short opinion piece, I could scarcely attempt to do justice to the breadth of the debate or the complexity of the arguments raised. I will focus on issues relating to practical implications of species concepts that have to come to my attention as a fish biologist working on evolutionary questions.     

Assessment of catch, effort and species changes in the pair-trawl fishery of southern Lake Malawi, Malawi, Africa

Abstract  Catch per unit effort (CPUE) and species composition in the pair-trawl fishery in commercial Area A of southern Lake Malawi were assessed from 1991 to 2001. CPUE declined from 1.7 t day⁻¹ in 1995 to 0.5 t day⁻¹ in 2001 and the fishery is considered depleted. In 2000/2002, catch composition differed significantly from a 1991 survey, and was dominated by haplochromine cichlids (92% by weight). Of 98 haplochromine cichlid taxa identified in the catch, 18 contributed ≥1% by weight. The artisanal fishery targeted similar species of a similar size. It was recommended that: (1) renewed investment and increased effort in the pair-trawl fishery is not advisable; (2) there was a need for effort limitation in Area A and (3) the pair-trawl fishery should not be managed in isolation of the artisanal fishery.     

The implications of solar UV radiation exposure for fish and fisheries

Ultraviolet radiation (UVR) possesses three important properties that combine to make it a potent environmental force. These include the potential to induce damage: UVR carries more energy per photon than any other wavelength reaching the Earth’s surface. Such highly energetic photons are known to damage many biological molecules, such as DNA and proteins. In addition, they can initiate a series of redox reactions to form reactive oxygen species (ROS), which cause oxidative stress to cells and tissues. The second property is ubiquity: owing to their dependence on light, primary producers and most visual predators, such as fish, are also necessarily exposed to damaging levels of UVR. Thirdly, the combined effect of UVR and additional environmental factors may result in synergistic effects, such as the photoactivation of organic pollutants and photosensitisation. In natural environments, the concentration of dissolved organic matter (DOM) and habitat depth are the two main factors controlling the degree of UVR exposure experienced by fish. Additional factors include vegetation coverage, particulate materials in suspension, pH and hydrological characteristics, and site location (latitude, elevation). The range of potential effects on fish includes direct DNA damage resulting in embryo and larval mortality, and adult and juvenile sunburn, as well as indirect oxidative stress, phototoxicity and photosensitisation.     

青肯泡浮游生物及鱼产潜力

青肯泡浮游生物共计1 1 3个种属,其中浮游植物63个种属,浮游动物5 0个种属,浮游植物数量2 37 .2 8×1 0 4 ind /L ,生物量2 5 0 0mg/L ,浮游动物数量5 5 0 5 .4ind /L ,生物量6 .692mg/L ,全库总鱼产潜力5 2 7760kg ,总放养量2 80 4 80 0尾。     

Distribution of and reproductive isolation among color morphs of a rock-dwelling Lake Victoria cichlid (Haplochromis nyererei)

Geographical, macro- and microhabitat distribution of and mate recognition among color morphs of a complex of Lake Victoria cichlids was studied. The distribution of most morphs was mutually exclusive but two morphs overlapped extensively and differed only in microhabitat requirements. Coloration differences between them were inherited, and wild fishes were homozygous in this respect. Positive morph assortative female mate choice was demonstrated. Over the largest part of their common geographical range intermediate phenotypes are absent and the two morphs are to be considered two biological species. However, in populations at one end of the range intermediate phenotypes with continuously varying male coloration make up the majority of the individuals. It is suggested that the status of color morphs as phenotypes of one species or as separate biological species is a function of environmental conditions that vary considerably between the localities. The data support the hypothesis that polymorphisms can be a step preceding speciation in cichlid fish.     

Distribution of and reproductive isolation among color morphs of a rock-dwelling Lake Victoria cichlid (Haplochromis nyererei)

Abstract— The geographical and macro- and microhabitat distribution of and mate recognition among color morphs of a complex of Lake Victoria cichlids were studied. The distribution of most morphs was mutually exclusive, but two morphs overlapped extensively and differed only in microhabitat requirements. Coloration differences between them were inherited, and wild fishes were homozygous in this respect. Positive morph-assortative female mate choice was demonstrated. Over the largest part of their common geographical range, intermediate phenotypes are absent and the two morphs are to be considered two biological species. However, in populations at one end of the range, intermediate phenotypes with continuously varying male coloration make up the majority of the individuals. It is suggested that the status of color morphs as phenotypes of one species or as separate biological species is a function of environmental conditions that vary considerably between the localities. The data support the hypothesis that polymorphisms can be a step preceding speciation in cichlid fish.     

Heavy metal concentrations and sediment quality of a cage farm on Lake Volta,Ghana

This study involved the determination of sediment quality and heavy metals in the water column and bottom sediment of a selected cage fish farm in Lake Volta, to assess the potential impact of metals and organic matter pollution on the lake due to cage fish farming. Sediment analysis indicated that the texture of all sampling sites was sandy clay loam with sand dominating with a range of 31.5%–81.2%. The organic matter (TOM) ranged from 4.42%–8.89%, while organic carbon (TOC) was from 2.57%–5.22%. Total nitrogen (TN) fluctuated between 0.22% and 0.45%; total phosphate ranged between 0.22% and 5.30%. The TOC, TOM and TN content in the farm sediment were significantly lower than those of the reference sites (ANOVA, p < .05). Lead, copper, cadmium and selenium were not detected in the water. The results revealed that heavy metal concentrations in the water column and sediments were low and within tolerable levels, indicating no influence of metals from fish feed was observed on the lake water quality. However, the farm seemed to have moderate impact on sediment quality from organic matter. Water and sediment quality monitoring should be embarked upon periodically to ensure sustainable cage culture in the Lake Volta.     

Air-breathing ecology of Arapaima sp.: Conservation implications for an imperilled fish

1. Arapaima (Arapaima sp.) are highly overexploited fish endemic to the Amazon basin. Because the fish are obligate air-breathers, it is possible to use surface-breathing events to count individuals visually for population censuses important for conservation, yet uncertainties remain about body size and environmental influences on air-breathing intervals, and thus count accuracy.
2. This study examined relationships between breathing intervals and environmental parameters (e.g. water temperature and transparency) and body size for radio-tagged arapaima (n = 12) in an upland river-floodplain (Lake Ayapuá, Amazonas, Brazil). Generalized additive mixed models were used to evaluate environmental, size, and behavioural correlates of breathing intervals.
3. Temperature was the most influential predictor of air-breathing intervals, followed by body size. The shortest breathing intervals were associated with consecutive ‘aggressive’ breaths while the longest breathing intervals had consecutive ‘calm’ breaths. Type of breath, size, and temperature predictors revealed that breathing intervals ranged from 4 to 46 min and were not significantly different among life stages (  = 15.9 min for sub-adults and adults (>1 m);  = 14.8 min for juveniles (<1 m)).
4. Whereas the current population census method uses fish counts in 20-min intervals, this study found that 15% of observed breaths, and two thirds of fish, took longer than 20 min to breathe. These findings were obtained in relatively cool-water environments, so it is recommended that future population census methods consider water temperature (e.g. extend intervals used for counts in cooler waters), which may improve the accuracy of census counts and thus further enhance arapaima conservation efforts.
5. This study demonstrated an effective method in which fundamental biological information is used to inform and improve population census methods for an imperilled fish in a region where traditional stock assessment is ineffective. Similar approaches for adaptive stock assessments could be applied to improve conservation of other air-breathing fishes (e.g. lungfishes) globally.

     

The optimum dietary protein level for the Mexican cichlid Cichlasoma urophthalmus (Günther): a comparison of estimates derived from experiments using fixed-rate feeding and satiation feeding

Optimum dietary protein levels of young Cichlasoma urophthalmus (Günther) of 0.3 g mean weight were determined at 28°C using two methods, a fixed feeding rate of 6% body weight per day and satiation feeding. In the fixed rate trials nine isoenergetic diets were formulated with protein levels ranging from 347 to 561 g kg^?1 using brown fish meal (anchovy) as the only protein source. In the satiation feeding trials, ten diets were formulated based on brown fish meal (mackerel) ranging from 0 to 450g kg^?1 protein. When fish were fed a fixed rate diet, the best absolute growth was obtained with diets between 435 and 560 g kg^?1 protein. Broken-line analysis showed that, in terms of weight gain (%), the optimum protein level was about 453 g kg^?1. When fish were fed to satiation, the best absolute growth was obtained with the 383 g kg^?1 protein diet, and broken-line analysis suggested an optimum of about 325 g kg^?1. The difference between the two results, using the two techniques, is very marked. The probable mechanism underlying these data is discussed.     

太湖湖鲚渔获量及年龄结构变化与环境间的相互关系

在太湖,随着鱼类总渔获量的不断增加和鱼类种类的不断减少,湖鲚(Coilia ectenestaihuensis Yen et Lin),一种小型浮游动物食性鱼类已成为绝对优势种.根据1952-2004年的统计数据和2003-2005年对湖鲚年龄结构和食物组成的调查,研究了湖鲚快速增加的原因以及与环境间的相互关系.结果如下:(1)在1952到2004年期间,湖鲚渔获量从1952年的640.5 t、占总渔获量的15.8%上升到2004年的21 221 t、占63.8%.尤其是1994年后湖鲚渔获量以每年1280.5 t的速度增加;(2)湖鲚种群年龄结构低龄个体呈现不断增加趋势.1979和1980年0 个体仅占33%和34%,而2003和2004年0 个体分别上升到99.04%和99.08%;(3)0 湖鲚主要摄食浮游动物.按照个数组成比例计算,枝角类平均占89.77%±13.69%、桡足类占7.84%±11.53%、轮虫仅占2.39%±4.95%.分析认为:江湖阻隔、过度捕捞、富营养化不断加重等人类活动以及太湖特有的鱼类生态学特点是导致湖鲚渔获量不断增加、年龄结构发生变化的根本原因.随着湖鲚数量的快速增加,在湖鲚生长期间太湖浮游动物现存量呈现相应下降趋势,这可能使太湖浮游植物更易暴发.     

The Alliance for Freshwater Life: A global call to unite efforts for freshwater biodiversity science and conservation

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Fishing down and fishing hard: ecological change in the Nile perch of Lake Nabugabo, Uganda

Abstract –  Fishing is a potent ecological force. In Lake Victoria, East Africa, Nile perch , Lates niloticus contributes to a multi-million dollar fishing industry but is threatened by over-exploitation. We quantified spatial and temporal trends in the distribution, diet and size of Nile perch in Lake Nabugabo, Uganda, a satellite of Lake Victoria. From 1995 to 2007, we detected a decline in catch per unit effort of Nile perch, a shift in their distribution and diet, and a decrease in their body size. A greater proportion of Nile perch were found near wetland ecotones than in the 1990s. This may reflect intensive size-selective fishing in open waters, and encroachment of Vossia cuspidata , an emergent macrophyte that has expanded across the lakeshore. Results highlight the strength of fishing in inducing phenotypic changes in target stocks as well as large-scale changes to the aquatic community and are of value in understanding changes in Lake Victoria.     

Fish biodiversity sampling in stream ecosystems: a process for evaluating the appropriate types and amount of gear

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Freshwater fishes of Southeast Asia: potential for the aquarium fish trade and conservation issues

SoutheastAsia is an area rich in biodiversity, with a high degree ofendemism in both flora and fauna. Many freshwater fish specieshave been exploited for the ornamental fish trade. As thepopulation in South East Asia increases, vast tracts of forestsare cleared for agricultural, industrial and urbanizationpurposes. To conserve and sustainably exploit the wild fishpopulation, measures should be adopted to protect this naturalresource. Already, several ornamental species have been severelyoverexploited, e.g. bala shark (Balantiocheilos melanopterus),pygmy loach (Botia sidthimunki) and arowana (Scleropagesformosus), but the extirpation of local populations occurs formany reasons, including deforestation, and not just because offishing for the trade. There are also still many species thathave great ornamental fish potential. Wild fish species have alsobeen successfully bred in captivity and conserved, e.g. tigerbarb (Puntius tetrazona), bala shark, pygmy loach and arowana.Other methods of conservation include public education, leavingpristine forests intact and reforestation. The aquarium trade ofthe bala shark, harlequin rasbora (Rasbora heteromorpha), clownloach (Botia macracanthus), arowana and sawfish (Pristismicrodon) is discussed     

Size and age are important factors for marine sanctuaries: evidence from a decade of systematic sampling in a subtropical marine park

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Temporal and spatial variations in the abundance and population structure of the spined loach (Cobitis taenia), a scarce fish species: implications for condition assessment and conservation

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Partial decontamination of rotifers with ultraviolet radiation: the effect of changes in the bacterial load and flora of rotifers on mortalities in start-feeding larval turbot

Exposure of the rotifer Brachionus plicatilis to ultraviolet radiation in 1 mm deep liquid layers at an energy intensity of 38 mW cm⁻² reduced the rotifer bacterial load by >90% within 2 min. Such radiation doses had no significant effect upon rotifer viability, fatty acid composition, swimming or feeding activity. The surviving bacterial flora of irradiated rotifers was similar to that of un-irradiated rotifers and there was no evidence of major differences in sensitivity to ultraviolet radiation between different bacteria. For irradiation of large numbers of rotifers, a flow-through cell was used, operated with rotifer densities of 200 ml⁻¹ and a flow rate of 1.5 l min⁻¹. In two separate field trials involving groups of 34,000 turbot larvae per group, higher survival was found in groups receiving ultraviolet-irradiated rotifers in which the bacterial load was reduced by 88%. This was attributed to the slower rate of colonisation of the larval gut by bacteria, as a consequence of the lower bacterial load on the rotifers. Attempts to introduce specified bacteria into the larval turbot gut in significant numbers by colonisation of either normal or irradiated rotifers with particular bacteria were unsuccessful.     

Spawning areas and migration patterns in the early life history of Squalius cephalus (Linnaeus, 1758): Use of otolith microchemistry for conservation and sustainable management

1. In the context of the River Rhône restoration programme, the objective of this study was to assess the dispersal and population connectivity of the European chub, Squalius cephalus (Linnaeus, 1758) in a section of the natural, free-flowing part of the lower River Rhône.
2. The elemental water signatures for Sr:Ca and Ba:Ca were measured at seven stations within the river section, including its tributaries and backwaters, to determine whether they could be differentiated by microchemistry. From August to October the signatures differed among three sectors of the study reach: the Rhône; the Ardèche; and the backwaters.
3. The elemental signatures of the otoliths of 178 young-of-the-year (YOY) chub from the stations were measured to assess spawning areas and identify early migratory life histories. Analyses of otolith microchemistry identified the natal origin of 95% of the fish. Sr:Ca signatures of otoliths showed early downstream migration for 30.4% of the YOY chub; however, 70% of the fish recruited relatively close to their spawning origin suggesting a potential inshore retention of fish.
4. The results showed (i) a non-negligible contribution of the tributaries and backwaters in the recruitment of fish into the main channel; and (ii) the ability of chub to migrate over several kilometres during their first few months of life.
5. This study shows that the combination of water and otolith microchemistry analyses of fish growth increases the understanding of fish life history. Moreover, the study revealed that half of the YOY fish from this river section came from the tributaries and the other half came from reproduction in the River Rhône (despite its high anthropization).
6. These methods offer promising future applications of otolith microchemistry for river management in the context of ecological rehabilitation, especially to assess the effectiveness of measures applied in the restoration of floodplain connectivity for riverine fish population conservation.

     

Bacteriocins and their applications for the treatment of bacterial diseases in aquaculture: a review

Aquaculture is one of the fastest growing food producing sectors in the world. The increase in the world population requires faster growth in aquaculture for better food availability and to overcome malnutrition. But this worldwide growth of aquaculture is overwhelmed by catastrophic fish diseases and spoilage during cultivation and preservation problems caused by pathogenic bacteria. Various remedies are available for food preservation and also from the bacterial diseases in the fish production. Due to the emergence of antibiotic resistance and adverse effects, an alternative to antibiotic is the need of the hour. The proteins such as bacteriocins, i.e. ribosomally synthesized antimicrobial peptides (AMPs) and possess antagonistic against closely related and other bacteria. These proteins are produced by most lineages of bacteria which are playing key roles in recognition and possess a cognate immunity system for self‐protection as well as host protection from infections. These proteins are potent immunomodulators with broad spectrum inhibition properties which are further used as novel therapeutic agents. In this review, we have tried to summarize the bacteriocins on the basis of their classifications, structural and functional attributes, mode of actions, bacteriocins isolated from fish and gut microbiota and presence of beneficiary bacteria in the fish gut. Further, this study highlighted where further research is a prerequisite to increase our basic understanding and search for novel bacteriocins to elucidate the proteins/peptides having antimicrobial properties for disease control in aquaculture as an alternative to antibiotics.     

Management of a highly unlikely native fish: The case of arctic charr Salvelinus alpinus from the Southern Alps

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