Microcosm experiments on the development of different plant parasitic nematode fauna in two soils from the Soudanese-Sahelian zone of West Africa

To test the hypothesis that the structure of plant parasitic nematode communities is affected by soil characteristics, experiments were conducted in a greenhouse with two soils with different physical and chemical characteristics and land management histories (fallow and a cultivated field) from adjacent plots. The cultivated soil was more sandy and had lower organic matter and nutrient contents than the fallow soil. Four nematode assemblages of Scutellonema cavenessi, Helicotylenchus dihystera and Tylenchorhynchus gladiolatus were inoculated in the soils. The pot experiment was conducted on millet during 2 months. Multiplication rates of H. dihystera were not significantly different in the two soils. T. gladiolatus had a lower multiplication rate in the fine-textured soil. S. cavenessi seemed to reproduce better in the coarse-textured soil when inoculated in low density with H. dihystera. The presence of plant parasitic nematodes in the cultivated soil caused a significant decrease of millet biomass, whereas plants in the fallow soil were less sensitive to nematode damage and were only affected when the soil was inoculated with T. gladiolatus alone. This experiment did not explain the distribution of plant parasitic species observed in the field. However, parameters other than the presence of a favourable host plant and micro-climatic conditions were found to induce differences in the reproductive rates of several species of plant parasitic nematodes. Received: 14 January 1996     

Effect of plant parasitic nematodes on the sustainability of a natural fallow cultural system in the Sudano-Sahelian area in Senegal

To study the influence of fallow on plant parasitic nematodes and soil fertility, the difference in the growth of millet in a greenhouse was compared in sterilized and naturally infested soil. These soils are ferruginous and were taken from a 17-year-old fallow plot and a neighbouring cultivated field, located in the region of Thysse Kaymor in Senegal. The plant-parasitic nematode community of the previously cultivated soil consisted primarily of two species: an ectoparasite, Tylenchorhynchus gladiolatus, and an endoparasite, Scutellonema cavenessi. The soil from the fallow plot was infested with many species, but under the influence of the millet crop, it evolved towards the two species situation observed in the cultivated soil, except that under the experimental conditions (in pots), Pratylenchus pseudopratensis replaced S. cavenessi. Whether or not the soil was infested with nematodes, the previous fallow period had a positive effect on the development of successive millet crops. The impoverishment of the soil through repeated cultivation and the impact of nematodes both reduced crop growth. The two factors evolved in the same way, that is a decrease in the development rate of the millet as the number of crop cycles increased. The symptoms of soil impoverishment can be corrected, either by suppressing the nematodes or by fallowing.     

Relationships between abiotic and biotic soil properties during fallow periods in the sudanian zone of Senegal

Relationships between soil characteristics, various forms of soil organic matter, microbial biomass and the structure of phytoparasitic nematode populations were investigated in six fallow fields aged from 1 to 26 years in the West African Savanna (WAS) belt in southern Senegal. Soil sampling was performed along two transects in each field. Herbaceous biomass and soil physical, chemical and biological characteristics were studied with principal component analysis (PCA) and the relationships between the parameters were extracted with co-inertia analysis.Soil properties (mainly calcium, magnesium and total carbon contents, and cation exchange capacity) slightly improved in the upper soil layer (0–5 cm) during the succession of vegetation. In constrast, in the 0–10 cm soil layer, microbial biomass and total soil organic carbon content showed no clear pattern of change over time, while highest charcoal stocks were found in older fallows where bush fires are frequent. In the 0–40 cm layer, living root biomass increased and herbaceous biomass decreased through the chronosequence. Evidence is presented here for particular relationships between some of the carbon components and the structure of the nematode community. Pratylenchus and Ditylenchus species were associated with the grass vegetation of the youngest fallows. In contrast Helicotylenchus and Scutellonema were present in old fallows. The multiplication of the latter appeared closely related to the presence of woody fine roots, whereas, that of the former seemed to be favoured by the presence of the coarsest roots of trees.Xiphinema had a higher density in soils with higher bulk density. Microbial biomass was not affected by fallow duration and was not correlated with the abundance of non-phytoparasitic nematodes. These results suggested that the management of crop pests such as nematodes in the soils of the WAS could be exerted through stump protection and tree plantation (improved fallow, agroforestry) during the crop-fallow cycle.     

Responses of soil nematode community structure to different long-term fertilizer strategies in the soybean phase of a soybean–wheat–corn rotation

The impact of long-term application of fertilizers in soybean fields on soil nematode community structure was studied. The long-term application model of fertilizers lasted 13 years in a soybean–wheat–corn rotation, and included three treatments: no fertilizer (NF), chemical fertilizer (urea and ammonium phosphate, CF), and pig manure combined with chemical fertilizer (MCF). The soil nematode community structures and ecological indices were determined from soil samples taken at five soybean growth stages from May to October in the soybean phase of the rotation. Fertilizer application had significant effects on abundance of plant parasites, bacterivores and fungivores (P < 0.05), but had no significant effects on total nematodes and omnivores-predators. Abundance of plant parasites was higher in NF than in MCF and CF, and abundance of bacterivores was highest in MCF. Fertilizer application significantly affected Plant-parasitic Nematode Maturity Index (PPI) and Nematode Channel Ratio (NCR) ecological indices (P < 0.05). Shannon–Weaver Index (H′) and Species Richness (SR) indices were higher in MCF than in either NF or CF. The abundances of total nematode and plant parasites showed increasing trend with soybean growth in all three treatments. This is probably due to soil environment being more suitable for soil nematode survival with more food available for plant parasites as the soybean grows. Soybean growth stage significantly affected the H′, Free Living Nematode Maturity Index (MI) and PPI. Bacterivores significantly correlated with soil nutrient status suggesting that they could be used as a potential indicator of soil fertility.     

Soil nematode community varies between rice cultivars but is not affected by transgenic Bt rice expressing <Emphasis Type="Italic">Cry1Ab</Emphasis> or <Emphasis Type="Italic">Cry1Ab</Emphasis>/<Emphasis Type="Italic">Cry1Ac</Emphasis>

Insecticidal crystal (Cry) proteins produced by transgenic Bacillus thuringiensis (Bt) rice that enter the soil via root exudation and plant residues may be harmful to non-target soil organisms. We conducted a 3-year field investigation to determine if soil nematode abundance and diversity were affected by exposure to two transgenic Bt rice cultivars, compared to their non-transgenic near isolines. Near isolines were Kemingdao (KMD-Bt) expressing the single Cry1Ab gene and its non-Bt near isoline Xiushui-11 (XSD), as well as Huahui-1 (HH-Bt) expressing the fused Cry1Ab/Cry1Ac gene and its non-Bt near isoline Minghui-63 (MH). Nematode variables including community composition, abundance, trophic groups, and most of the common genera differed significantly between the rice cultivars. However, these nematode variables were similar under transgenic Bt rice and its non-Bt near isoline, although higher Shannon’s index value and Pielou’s index value were found in soils planted with Bt rice than the non-Bt near isoline. During this 3-year field study, gene modification (single Cry1Ab gene and fused Cry1Ab/Cry1Ac gene) supports a more uniform distribution of nematode species but had no effect on soil nematode abundance and community composition. We conclude that continuous cultivation of KMD-Bt and HH-Bt rice varieties for 3 years is not detrimental to soil nematode communities under field conditions.     

Impact of a 5-year winter cover crop rotational system on the molecular diversity of arbuscular mycorrhizal fungi colonizing roots of subsequent soybean

The impact of winter cover crops, specifically wheat (Triticum aestivum L.), red clover (Trifolium pratense L.), and rapeseed (Brassica napus L.) or winter fallow, on community composition of arbuscular mycorrhizal fungi (AMF) in subsequent soybean roots was investigated in a 5-year field trial on andosolic soils in Japan. Soybean roots were sampled at full-flowering and analyzed for AMF communities using a partial LSU rDNA region. Phylogenetic analysis detected 22 AMF phylotypes, including eight Glomus, three Gigaspora, two Scutellospora, three Acaulospora, two Rhizophagus, and one of Funneliformis, Diversispora, Paraglomus, and an unknown glomeromycete in the roots. The 5-year rotation of different winter cover crops or winter fallow did not impact the molecular diversity of AMF communities colonizing the roots of subsequent soybean. In all of the rotations, Glomus and Gigaspora phylotypes were common to soybean roots over the 5-year period. Redundancy analysis (RDA) demonstrated that AMF communities in the roots of subsequent soybean were not significantly different among winter cover crop rotations or fallow. However, AMF communities in soybean roots were clearly influenced by rotation year suggesting that climate or other environmental factors were more important than winter cover cropping system management.     

Successional trajectories of soil nematode and plant communities in a chronosequence of ex-arable lands

Conversion of arable land into semi-natural grassland or heath land is a common practice for restoring and conserving plant diversity. However, little is known about the effectiveness of land conversion for restoring and conserving taxonomic and functional diversity in the soil. We studied soil nematode community development in a chronosequence of abandoned fields and related this to plant community development. The taxonomic and functional composition of the soil nematode community was analyzed to detect changes in soil food web structure, using semi-natural sites and theoretical plant and soil communities as references.While plant communities clearly developed towards the semi-natural references, there was less direction in succession of nematode taxa. The number of fungal feeding nematodes increased after land abandonment. Numbers of omni-carnivorous nematodes expanded only during the first years, after which there were no substantial changes for the next three decades. Plant communities on the ex-arable fields developed towards the theoretical reference plant associations Galio hercynici-Festucetum ovinae and Genisto anglicae-Callunetum. Nematode communities developed away from a theoretical community indicative of arable land, but there was no clear development towards a theoretical (semi-)natural reference. Our results show that restoration and conservation of plant communities is of limited indicative value for developments belowground: successful restoration of plant diversity does not necessarily imply successful restoration of belowground diversity. Assessing the impact of conservation measures on restoring soil biodiversity requires information on belowground community composition of (semi-)natural areas in order to establish proper references for restoration sites.     

Influence of some agroforestry practices on the temporal structures of nematodes in western Kenya

The influence of agroforestry practices on the temporal fluctuation of nematodes was studied in western Kenya. The experiment comprised a fallow phase, which had the following treatments: (1) maize/beans intercropping; (2) maize/beans intercropping with rock phosphate; (3) Crotalaria fallow; (4) Crotalaria fallow with rock phosphate; (5) Crotalaria fallow with rock phosphate (+ Calliandra and napier hedges); and a cultivation phase when all plots were planted to maize and beans. There were strong seasonal fluctuations in the abundance of both free-living and plant-parasitic nematodes. The abundance of plant-parasitic nematodes did not vary among cropping systems during the fallow phase, but varied significantly during the cultivation phase of the experiment. Pratylenchus spp. appeared to be stimulated by the application of phosphorus while Scutellonema spp. had higher populations in the maize crops, which were planted after a Crotalaria fallow. In both the fallow and the cultivation phases, the sampling date had a significant impact on nematode abundance. There were more plant-parasitic nematode species during the fallow phase of the study, but the evenness of the different nematode communities was significantly greater in the cultivation phase of the experiment.     

设施菜地种植年限对土壤理化性质和生物学特征的影响

【目的】 研究分析北京郊区不同种植年限设施菜地的土壤生态环境、土壤理化性状、土壤微生物数量、土壤线虫群落结构的差异,为不同种植年限设施菜地土壤管理提供科学依据。 【方法】 以露地土壤为对照 (CK),采集种植 3年、5年、8年和 12年的0—30 cm设施蔬菜土壤样品,采用常规土壤理化性质检测方法测定了土壤的理化性状,采用荧光定量法和线虫形态学鉴定方法,分析土壤细菌、真菌数量以及土壤线虫群落组成。 【结果】 随种植年限增加,设施菜地土壤容重和pH值均明显下降,总孔隙度、EC值、SO₄2–、Ca2+、有机碳、NH₄+-N、NO₃–-N含量均持续升高。与CK相比,种植年限 3年、5年、8年、12年的样地土壤细菌和真菌的数量均显著增加 (P < 0.05)。随种植年限增加,根结线虫属 ( Meloidogyne)、螺旋属 (Helicotylenchus)、异皮属 (Heterodera) 丰度逐渐增加;土壤线虫密度、植物寄生性线虫丰度显著增加 (P < 0.05),而食细菌、食真菌、杂食/捕食线虫丰度逐渐降低。线虫群落的多样性 H′、SR指数和均匀性J′ 指数均呈现出先增加后降低趋势,与CK相比,种植年限 12年样地的指标值显著降低 (P < 0.05)。所有种植样地NCR > 0.5,表明样地土壤食物网以食细菌通道为主,土壤有机质以细菌分解途径为主。WI、MI指数逐渐降低,而PPI指数表现出相反的趋势,其中种植年限12年样地WI < 1,这表明土壤矿化途径转变为以植物到植食性线虫为主要参与者,土壤生态系统受干扰程度逐渐增强,土壤健康状况变差。土壤环境因子与土壤生物数量间的冗余分析表明,土壤pH 、总孔隙度、容重、EC值、有机碳、SO ₄2–、NH₄+-N、NO₃–-N是影响细菌、真菌和线虫数量的关键因子,不同种植年限设施菜地由于改变这些因素而影响土壤生物群落组成。 【结论】 连续种植导致京郊设施菜地盐分含量显著升高、养分失衡、土壤酸化。理化性状的变化改变了细菌和真菌数量,进而导致土壤线虫总数、植物寄生性线虫比率逐渐增加,尤其根结线虫属比率增加显著,食细菌、真菌和杂食/捕食线虫比率逐渐降低。以种植12年后的土壤受干扰程度最大,土壤微生态失衡最严重。      

Assessing the impact of cultivation and plant domestication of highbush blueberry (Vaccinium corymbosum) on soil properties and associated plant-parasitic nematode communities

We investigated the interactive effects of plant domestication and perennial cultivation on diversity and richness of plant-parasitic nematode (PPN) communities associated with highbush blueberry (Vaccinium corymbosum). Rhizospheric soil of V. corymbosum plants was sampled in coupled wild and cultivated sites within the Pinelands National Reserve. Although PPN diversity was higher in cultivated plant soil samples, richness was higher in wild plant soil samples. The most important soil properties, iron and calcium, were associated with cultivated soil and were the best predictors of genera abundance patterns. Nematodes in the genus Criconemoides were 187× more abundant in wild sites than cultivated and thus, were significant indicators of wild sites. In this study cultivation of V. corymbosum appears to benefit the PPN community but alters the community composition considerably.     

Quantification of the effects of rotation breaks on soil biological properties and their impact on yield decline in sugarcane

Three contrasting rotation breaks (sown pasture, alternate crops and bare fallow) were established at five sites in Queensland, Australia, on land that had been under sugarcane monoculture for at least 20 years. The breaks were in place for 30-42 months at four sites and for 12 months at the fifth site. The effects of the breaks on selected soil biological properties were assessed following the removal of the breaks and before the area was re-planted with sugarcane. At the four sites with the long-term breaks, microbial biomass increased under the pasture break, declined under the bare fallow break and did not change significantly under the crop break, compared to microbial biomass under continual sugarcane. At these sites, populations of the root lesion nematode (Pratylenchus zeae) declined under all three breaks whereas populations of free-living nematodes increased under the pasture and crop breaks but declined under the bare fallow break. At the site with the 12 month breaks, a forage legume pasture increased microbial biomass, reduced lesion nematodes and together with the crop break increased populations of free-living nematodes. At the four sites with the long-term breaks there was an increase in the ratio of fungal:bacterial fatty acids and an increase in fatty acid 16:1ω5c (used as a biomarker for mycorrhizal fungi) under the pasture and crop breaks. Also at these sites, the soil microbial community under the pasture, crop and bare fallow breaks, respectively, showed increased, no change or diminished capacity to utilize carbon substrates compared to the soil microbial community under continual sugarcane. The yield of the sugarcane crop following all three breaks was significantly higher than the yield of the crop following continual sugarcane at each of the sites with the long-term breaks. Examination of the longevity of the effect of the rotation breaks on soil biological properties at the sites with the long-term breaks, suggested that effects on some soil organisms (e.g. lesion nematodes) maybe short-lived.     

Winter legume and tillage effects on cotton growth and soil ecology

Field studies were conducted at 2 locations in Alabama during 1984 and 1985 to identify cultural practices which would improve cotton (Gossypium hirsutum L.) stands when plantned no-till into winter legumes. The soils were a Decatur silt loam (Rhodic Paleudult) and a Norfolk sandy loam (Typic Paleudult). The experimental design was a randomized complete block with 4 replications. Whole plots consisted of winter annual legumes (Vicia villosa Roth or Trifolium incarnatum L.) and fallow areas. Split-plot treatments established at cotton planting included conventional and conservation tillage, and fungicide. Soil samples were collected at cotton planting for population determination of Collembola and Acari species, and for estimation of cotton-disease fungus (Rhizoctonia solani) infestation. Collembola populations were greater in the Decatur than Norfolk soils, and higher in legume-mulched than fallow soils by 39 and 72% for the Decatur and Norfolk soil, respectively. Disease infestation in the Decatur soil was 10% higher in legume than fallow plots, and 18% higher in legume than fallow plots in the Norfolk soil. Cotton populations were 19% less in legume than fallow areas, and 25% less with conservation (no-till) than with standard tillage. Bedding improved cotton stands by 21% compared to conservation tillage. Seed-cotton yields from the Decatur soil were consistently high (3798 kg ha⁻¹, and there was no yield response to treatments. Maximum seed-cotton yields at the Norfolk site were achieved with conservation tillage in the fallow area, and conventional tillage in the legume area (both receiving fungicide).     

Exotic plant influences soil nematode communities through litter input

The impact of exotic plant invasions on soil communities and nutrient cycling processes has received an increasing attention in recent years. To test whether the exotic plant invasions affect nematode communities through altering litter quality, we compared mass loss and nematode colonization during the stem litter decomposition of invasive Spartina alterniflora and native Phragmites australis in salt marshes of the Yangtze River estuary, China. Plastic drinking straws were synchronously used as controls. The addition of plant residues was found stimulating the growth of nematodes, particularly bacterial feeders on day 16 after burial. A top-down control of bacterivous nematodes by carnivores existed in nematode succession during the litter decomposition. With higher nitrogen content and lower C:N ratio, stem litter of the invasive S. alterniflora decayed faster and supported more abundant nematodes than the native P. australis. The greater nematode abundance in S. alterniflora was mainly due to two dominant genera of bacterial nematodes, namely Diplolaimelloides and Diplolaimella. Lower values of maturity index and structure index in S. alterniflora than in P. australis litter indicate that a more degraded food web condition resulted from the faster litter decay. A considerable difference in nematode community structures between two litter types only occurred in a certain period of the decomposition (from 8 to 32 days after burial), suggesting that the changes in faunal community structure are time dependent. In summary, this study confirmed the hypothesis that the invasion of S. alterniflora stimulates the growth of bacterial nematodes by producing higher quality of litter than the native P. australis. The results obtained here suggest that the invasion of exotic plant is likely to alter ecosystem functions indirectly through exerting its effect on soil decomposer communities such as nematodes.     

Effects of tillage and fertilizer on nematode communities in a Japanese soybean field

No-tillage (NT) cropping systems develop distinct soil ecosystems characterized by a diverse soil fauna and slow fungal decomposition. However, nematode community analyses sometimes fail to detect these characteristics because the treatment before study or the sampling period is too short or the studies are not comprehensive. Different nematode taxa may occur depending on the geographic region and soil type, thereby affecting the usefulness of nematode analyses for soil biological assessment. However, studies in Asia are scarce. Thus, in this 2-year study, we compared nematode populations, community structures, and soil physicochemical properties between long-term NT and conventional tillage (CT) treatments combined with chemical (CF), organic (OF), or no (NF) fertilizer treatments in a Japanese soybean field. We then examined whether nematode diversity and community indices could detect differences among the treatments in the Japanese andosols. Although the effects of tillage on nematode densities were significant, the overall trend in NT–CT differences was not clear, except for omnivores and Meloidogyne. The effects of tillage on nematode diversity and community indices were apparent: diversity indices, maturity index (MI) and related indices, structure index, and channel index were higher, whereas enrichment index (EI) was lower in NT because of higher densities of K-strategy taxa, fungal and facultative root feeders, and lower densities of r-strategy bacterial feeders. Fertilizer treatments also affected nematode densities: most feeding groups were less abundant in NF and predatory nematodes were more abundant in OF than in other treatments. OF increased nematode diversity via an increase in microbivorous and predaceous nematodes. However, the effects of fertilizer on most community indices were not apparent. Interactions between tillage and fertilizer effects were significant for Pratylenchus and total nematode densities, MI, and EI. Among the soil properties differing among treatments, Ca and Mg content, cation exchange capacity, and percent total nitrogen affected nematode community structure. In conclusion, nematode community analyses using index calculations are useful for assessing soil biological properties under different tillage treatments in Japanese andosols, as well as in soil types in other countries. However, index calculations were less sensitive at detecting fertilizer treatment effects, probably because of simultaneous increases in r- and K-strategy nematodes and OF compost that was too decomposed. Other community analyses such as indicator species analysis or diversity evaluations should be used to detect fertilizer effects.     

Soil nematode assemblages as bioindicators of primary succession along a 120-year-old chronosequence on the Hailuogou Glacier forefield,SW China

Successional dynamics in terrestrial ecosystems is important for interactions between aboveground and belowground subsystems. In this study, nematode communities in a Hailuogou Glacier Chronosequence from seven stages were investigated to determine whether changes in soil phosphorus (P) and nematode assemblages parallel those observed in aboveground communities, and whether the primary succession in this chronosequence has entered a retrogressive phase after 120 years of succession. The initial 40-year succession, including stages 2, 3 and 4, can be viewed as a build-up phase. Especially at stage 3, vegetation succession from grassland to forest accelerated the accumulation of plant litter and bioavailable P, paralleled with a sharp increase in nematode abundance. The mature phases covering stages 5, 6 and 7 displayed most balanced nematode communities, in which abundance, taxon richness, maturity index and structure index were at highest. However, the last stage 7 appeared to show some retrogressive characteristics, as suggested by the reduced bioavailability of P and a significant decrease in nematode densities, along with the disappearance of some rare genera of nematodes from higher trophic guilds, resulting in decreases in the nematode channel ratio, plant parasite index and enrichment index. Thus, the Hailuogou Glacier Chronosequence may enter its retrogressive phase during the next decade or century. A bacterial-based nematode energy channel dominated the chronosequence during the development; by contrast, a fungivore-based channel was activated at the early and late stages, because fungivores are better adapted to nutrient-poor environments. Our results demonstrated that different nematode guilds have contrasting responses to chronosequence stages, possibly due to their different responses to bottom-up and top-down controls. Furthermore, soil nematode communities could be used as sensitive bioindicators of soil health in glacial-retreat areas.     

Assessment of fungal communities in soil and tomato roots subjected to diverse land and crop management systems

Effects of diverse agricultural land management practices on soil and on root colonizing fungal communities were determined through a PCR-based molecular method and a culture-dependent method, respectively, in a field location with uniform soil type. Initiated in July 2000, the management systems were: conventional tomato production, frequent tillage (disk fallow), undisturbed weed fallow, bahiagrass pasture (Paspalum notatum var. notatum ‘Argentine’), and an organically managed system including cover crops and annual applications of poultry manure and urban plant debris. Culture-dependent colony counting was used to identify and enumerate communities of root colonizing fungi and length heterogeneity polymerase chain reaction (LH-PCR) analysis of internal transcribed spacer-1 (ITS-1) profiles to characterize phylotypes in soil fungal communities. Three years after initiation of land management treatments and midway through tomato cultivation, both methods detected a high degree of similarity in fungal community composition between weed fallow and bahiagrass plots. Soil fungal communities in organically managed plots were similar to each other and distinct from communities in other land management systems while the composition of root colonizing fungal communities in organic plots was divergent. The results demonstrate that the soil fungal communities and root colonizing fungal communities were affected differently depending on land and crop management practices. Fusarium oxysporum was a dominant species in all soil and root colonizing fungal communities except those subjected to organic management practices.     

Do bacterial-feeding nematodes stimulate root proliferation through hormonal effects?

We prepared soil with greater populations of bacterial-feeding nematodes either by stimulating the native populations of the soil, adding an additional mixed community of nematodes, or by adding Caenorhabditis elegans, to investigate the effects of bacterial-feeding nematodes on root morphology, soil auxin (indolyl-3-acetic acid—IAA) concentrations and microbial community structure. In the presence of enhanced bacterial-feeding nematode populations, tomato plants had a more highly branched root system with longer and thinner roots. Root system development was greater with native nematodes than C. elegans. The changes of root morphology were accompanied by an increase of soil IAA content and an altered microbial community structure. Bacterial-feeding nematodes may have affected plant growth by stimulating hormone production through grazing-induced changes to the soil microbial community.     

Nematode community populations in the rhizosphere of cultivated olive differs according to the plant genotype

Classical and molecular methods were used to study the nematode communities associated with rhizosphere soil and roots of a collection of 16 olive cultivars from a world olive germplasm bank in Mengibar (Jaen province, southern Spain). Classical nematological analysis, including soil nematode extraction, species counting and morphological identification showed that 24 taxa belonging to 9 genera (including Aphelenchoides, Criconemoides, Ditylenchus, Filenchus, Helicotylenchus, Merlinius, Paratylenchus, Tylenchus, and Xiphinema) and 8 families (including Anguinidae, Aphelenchidae, Belonolaimidae, Criconematidae, Hoplolaimidae, Longidoridae, Tylenchidae and Tylenchulidae) of plant-parasitic nematodes were present, with one species (Helicotylenchus digonicus) being prevalent in all samples. The low values of the plant-parasitic nematode index (PPI) indicated a high disturbance of the field soil probably due to application of herbicides and fertilizers. Cluster analysis of population densities of the various nematode species, nematode trophic groups, and ecological indices grouped most olive cultivars into three main clusters indicating that olive genotypes differ in the nematode communities in their rhizosphere soil. The use of T-RFLP analysis discriminated to a higher extent the nematode communities present in the rhizosphere soil from the different olive cultivars as compared to the morphological-based analysis. This study provides the first evidence of an effect of the olive genotype on nematode community composition by combining classical morphological and molecular approaches.     

Diversity and vertical distribution of indigenous arbuscular mycorrhizal fungi under two soybean rotational systems

To evaluate the importance of arbuscular mycorrhizal fungi (AMF) to crop production, it is imperative to move beyond the plow layer to include the full soil profile impacted by plant roots. To illustrate this, we investigated the vertical distribution of AMF biomass and community structure within the top 100 cm of soil in soybean (Glycine max (L.) Merr., cv: Enrei) rotational systems cropped to wheat (Triticuma estivum L. cv: Bandowase) or left fallow using fatty acid methyl ester (FAME) biomarkers and molecular analysis, respectively. AMF biomass, as measured by concentration of C16:1cis11, declined during fallow and with increasing soil depth. Greater than 50 % of the stored AMF biomass was found at depths below 35 cm. Phylogenetic analysis revealed 16 AMF phylotypes, including nine Glomus, two Gigaspora, two Scutellospora, and one each of Diversispora, Paraglomus, and an unknown glomeromycete, at different sampling depths in this study. Cluster analysis based on the number and abundance of each AMF phylotype formed two distinct clusters separating wheat from fallow rotations. There was no distinct relationship with soil depth beyond clustering AMF communities above and below 20 cm under wheat. Redundancy analysis (RDA) and hierarchical cluster analysis demonstrated that AMF communities by soil depth within each rotation were not significantly different. However, AMF communities were clearly influenced by crop rotation, where the distribution of specific AMF phylotypes responded to the presence of the wheat crop.     

Plant species influence microbial diversity and carbon allocation in the rhizosphere

Plant species effects on microbial communities are attributed to changes in microbial community composition and biomass, and may depend on plant species specific differences in the quality of resources (carbon) inputs. We examined the idea that plant-soil feedbacks can be explained by a chance effect, which is the probability of a highly productive or keystone plant species is present in the community and will influence the functions more than the number of species per se. A ¹³C pulse labelling technique was applied to three plant species and a species mixture in a greenhouse experiment to examine the carbon flow from plants to soil microbial communities. The ¹³C label was given as CO₂ to shoots of a legume (Lotus corniculatus), a forb (Plantago lanceolata), a grass (Holcus lanatus) and a mixture of the three species. Microbial phospholipid fatty acids (PLFA) was analysed in order to determine the biomass and composition of the soil microbial community. The incorporation of the stable isotope into soil microorganisms was determined through GC-IRMS analyses of the microbial PLFAs. Plant species identity did not influence the microbial biomass when determined as total carbon of microbial phospholipid fatty acids. However, the labelled carbon showed that the grass monoculture (H. lanatus) and the plant mixture allocated more ¹³C into bacteria and actinomycete biomass than the other plant species. H. lanatus monocultures had also the highest amounts of ¹³C allocated to AM-fungi and saprophytic fungi. The carbon allocation from plants to soil microorganisms in a plant species mixture can thus be explained by the presence of a highly productive species that influence soil functions.