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1.
Using a large‐scale data set that included first lactation test day records from 1975 to 2000 for Japanese Holsteins, genetic parameters for milk yield were estimated by using random regression (RR) test‐day models (TDM) with heterogeneous and homogeneous residual variances. It is necessary for the RR‐TDM to include a function that explains the shape of the lactation curve. The RR‐TDM with the LW curve, which combined Wilmink's curve and a Legendre polynomial, was used for fitting the model for milk yield. In recent years, increases in residual variance have been noted for Japanese dairy cattle. Thus, three kinds of heterogeneous residual variance over the calving year were considered: H1, H2 and HG. Linear and quadratic exponential functions for the calving year were used in H1 and H2, respectively. Residual variance of HG was divided into five groups according to calving year. Homogeneous residual variance was HO. All heterogeneous residual variances increased with calving year in an almost linear fashion. Residual variance increased over the study period. However, there is no need to consider heterogeneous residual variances in genetic evaluations, because the heterogeneity of residual variance over the years did not affect the ranking of top sires and cows. 相似文献
2.
Koichi Hagiya 《Animal Science Journal》2019,90(4):457-461
The procedure used for the genetic evaluation of dairy cattle in Japan has developed from a lactation sire–MGS model to a multiple‐lactation random regression test‐day animal model. Genetic evaluation of Holstein bulls in Japan began in 1989 with the use of field‐style progeny testing; dairy herd improvement program data from all over Japan were used, along with a sire and maternal grandsire model. In 1993, an animal model was introduced to estimate breeding values for yield and type traits. A random regression test‐day model was first applied in 2010. In the business of breeding dairy cattle, it is very important to users that estimated breeding values are reliable and stable among subsequent routine evaluations. With experience in the genetic evaluation of dairy cattle in Japan, Japanese researchers have found ways to improve the stability of estimated breeding values. These modifications involve changes in data editing, development of evaluation models, changes to the structures of unknown‐parent groups, awareness of the problems of predicting lactation yield from partial test‐day records, and adjustment for heterogeneity within herd variances. Here, I introduce developments in, and our experiences with, the genetic evaluation of yield traits of Holstein cattle in Japan. 相似文献
3.
Based on individual cow live weight gain, feeding strategies were designed for individual feeding of dairy cows in loose-housing systems, and examined in a four-year production trial including 115 Danish Red (DR), 91 Danish Holstein (DH), and 93 Danish Jersey (DJ). The objective of the present paper was to examine the milk yield obtained in response to three feeding strategies. The interrelationship between feed intake and live weight changes is presented in a companion paper.Cows were stalled in a loose-housing system based on automatic milking, automatic recording of feed intake and automatic weighing of the cows. All cows had 3 kg of individually separately offered concentrate (ISC) in addition to a mixed ration (MR). Cows were either allowed a medium energy MR during whole lactation (strategy MR1) or a high energy MR during early lactation, which was reduced to a low energy MR either early or late (strategy MR2-E and MR2-L). The early and late changes were defined as a live weight gain after live weight minimum at 15 and 35 kg, respectively, for DR/DH and 11 and 25 kg, respectively, for DJ. When MR energy concentration was changed, cows on the MR2 strategies were offered 3 kg per day of extra concentrate. The total allowance of 6 kg ISC was stepwise reduced to 3 kg per day as live weight continued to increase until 50 and 35 kg for DR/DH and DJ, respectively.Compared to feeding the MR1 strategy, the analysis showed that feeding the MR2 strategies did not significantly affect milk yield within primiparous DR and DH or within any DJ, as total lactation feed energy intake within these groups of cows was not significantly affected by the feeding strategy. Results obtained for multiparous DH showed that it is possible to increase milk yield without reducing the milk:feed ratio, when MR2 strategies were applied compared to the MR1 strategy. Feeding high energy rations during early lactation caused a higher peak feed energy intake within multiparous cows of DH and DR, but only multiparous DH obtained higher peak ECM yield in response to higher feed energy intake in early lactation. Across breed the results suggested that cows offered the MR2-E strategy might obtain higher lactation ECM yield compared to cows offered the MR2-L strategy due to a higher ECM yield persistency obtained by cows offered the MR2-E strategy. Results on feed intake and live weight changes presented in a companion paper indicated, that cows offered the MR2 strategies obtained a lower extent of mobilization compared to cows offered the MR1 strategy, and feeding the MR2-E strategy significantly increased duration of the mobilization period, which might have increased MR2-E cows' ability to maintain a high milk production during mid lactation. 相似文献
4.
Laiza Helena de Souza Iung Roberto Carvalheiro Haroldo Henrique de Rezende Neves Herman Arend Mulder 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2020,137(3):263-280
Genetic control of residual variance offers opportunities to increase uniformity and resilience of livestock and aquaculture species. Improving uniformity and resilience of animals will improve health and welfare of animals and lead to more homogenous products. Our aims in this review were to summarize the current models and methods to study genetic control of residual variance, genetic parameters and genomic results for residual variance and discuss future research directions. Typically, the genetic coefficient of variation is high (median = 0.27; range 0–0.86) and the heritability of residual variance is low (median = 0.01; range 0–0.10). Higher heritabilities can be achieved when increasing the number of records per animal. Divergent selection experiments have supported the feasibility of selecting for high or low residual variance. Genomic studies have revealed associations in regions related to stress, including those from the heat shock protein family. Although the number of studies is growing, genetic control of residual variance is still poorly understood, but big data and genomics offer great opportunities. 相似文献
5.
Estimating genetic connectedness among herds is important for the accuracy of dairy cattle genetic evaluation. When selecting between animals raised in different herds, the accuracy of their genetic evaluations can be influenced by the degree of connectedness among these herds. In this study, two methods were used to measure genetic connectedness, CR (genetic connectedness rating ) and GLt (total number of direct genetic links between group), among herds from Beijing, Shanghai, and Tianjin. Genetic connectedness between the herds from Beijing and Tianjin was 23.95%, between Beijing and Shanghai was 17. 10%, and between Shanghai and Tianjin it was 14.28%. Genetic connectedness between herds from Beijing and Tianjin was the highest and that between Shanghai and Tianjin was the lowest. The correlation coefficient for the two methods was 0. 808. Some suggestions for improved genetic evaluation of dairy cattle were also discussed. 相似文献
6.
7.
K.F. Stock I. Hoeschele & O. Distl 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2007,124(5):308-319
Simulated horse data were used to compare multivariate estimation of genetic parameters and prediction of breeding values (BV) for categorical, continuous and molecular genetic data using linear animal models via residual maximum likelihood (REML) and best linear unbiased prediction (BLUP) and mixed linear-threshold animal models via Gibbs sampling (GS). Simulation included additive genetic values, residuals and fixed effects for one continuous trait, liabilities of four binary traits, and quantitative trait locus (QTL) effects and genetic markers with different recombination rates and polymorphism information content for one of the liabilities. Analysed data sets differed in the number of animals with trait records and availability of genetic marker information. Consideration of genetic marker information in the model resulted in marked overestimation of the heritability of the QTL trait. If information on 10,000 or 5,000 animals was used, bias of heritabilities and additive genetic correlations was mostly smaller, correlation between true and predicted BV was always higher and identification of genetically superior and inferior animals was - with regard to the moderately heritable traits, in many cases - more reliable with GS than with REML/BLUP. If information on only 1,000 animals was used, neither GS nor REML/BLUP produced genetic parameter estimates with relative bias 50% for all traits. Selection decisions for binary traits should rather be based on GS than on REML/BLUP breeding values. 相似文献
8.
H. H. Oostra J. Stefanowska K. Sällvik 《Acta Agriculturae Scandinavica, Section A - Animal Sciences》2013,63(4):158-165
Abstract In this trial, the effects of the forage feeding frequency on the waiting time prior to milking and the cowshed facility utilization by cows milked in an automatic milking unit (AMU) were studied. The feeding frequency was increased from two times per day to six times per day. It was found that the average waiting time per visit for cows using the AMU was reduced from 755 s to 351 s when the feeding frequency was increased. The daily number of visits (milking visit, failed milking visit and not qualified visit) to the AMU was not affected by the change in feeding frequency. It was also found that increasing the feeding frequency had a positive effect on utilization of the cowshed facilities, such as the occupation of the feeding fence, and on the cowshed facilities in the waiting area (cubicles) of the AMU. 相似文献
9.
中国荷斯坦牛SCD1基因多态性与泌乳性状的关联分析 总被引:1,自引:0,他引:1
本研究旨在探索中国荷斯坦牛SCD1基因多态性与产奶性状的相关性.以上海某奶牛场610头中国荷斯坦牛为试验材料,采用PCR-SSCP法对SCD1基因A293V位点遗传多态性进行分析,利用一般线性模型分析SCD1基因A293V位点突变对测定日产奶量、乳脂率、乳蛋白率、305天校正产奶量、乳脂量、乳蛋白量及体细胞评分7个泌乳性状的影响.共检测到AA、AV和VV 3种基因型,频率分别为0.634、0.323和0.043,等位基因A和V的频率分别为0.796和0.204.该位点突变对乳脂率、乳蛋白率的影响达到显著水平(P<0.05),对测定日产奶量、305天校正产奶量、305天乳蛋白量和305天乳脂量以及体细胞评分影响不显著(P>0.05).多重比较表明,VV基因型个体的乳蛋白率、乳脂率极显著高于AA、AV型个体(P<0.01).SCD1基因A293V位点突变对中国荷斯坦牛泌乳性状的遗传效应有一定程度的影响,但影响机理需要进一步的研究. 相似文献
10.
Number of inseminations to conception (NINS), an important fertility trait, requires appropriate approaches for genetic evaluation due to its non‐normal distribution and censoring records. In this study, we analyzed NINS in 474 837 Danish Holstein cows at their first lactation by using seven models which deal with the categorical phenotypes and censored records in different manners, further assessed these models with regard to stability, lack of bias and accuracy of prediction. The estimated heritability from four models based on original NINS specified as a linear Gaussian model, categorical threshold model, threshold linear model and survival model were similar (0.031‐0.037). While for the other three models based on the binary response derived from NINS, referred as threshold model (TM), logistic and probit models (LOGM and PROM), the heritability were estimated as 0.027, 0.063 and 0.027, respectively. The model comparison concluded that different models could lead to slightly different sire rankings in terms of breeding values; a more complicated model led to less stability of prediction; the models based on the binary response derived from NINS (TM, LOGM and PROM) had slightly better performances in terms of unbiased and accurate prediction of breeding values. 相似文献
11.
Arne Vanhoudt Steven van Winden John C. Fishwick Nicholas J. Bell 《Irish veterinary journal》2015,68(1)
Background
Cow rumination and lying behaviour are potentially useful and interrelated indicators of cow health and welfare but there is conflicting evidence about how reliable these measures are. The objective of this study was to quantify the variation of indices of cow comfort and rumen health in a herd with an automatic milking system for which husbandry was relatively constant, in order to propose an alternative approach to optimising the use of these indices when continuous monitoring is not available. During a period of 28 days, standing index, cud chewing index and rumination index were observed.Results
The daily mean standing index ranged between 9.0 and 18.0 per cent, cud chewing index between 43.5 and 74.0 per cent, and rumination index between 49.0 and 81.0 per cent. The point of lowest variation in the indices was determined as that with the lowest coefficient of variation. The coefficient of variation was lowest for data collected between 240 and 270 minutes after refreshing of the bedding material on the cubicles for both the standing index and rumination index, and for data collected between 120 and 150 minutes after refreshing of the bedding material on the cubicles for the cud chewing index.Conclusions
In spite of relative constant husbandry practices in a herd with an automatic milking system, the variation in the standing index, cud chewing index and rumination index was still considerable. This suggests these measures should be repeated on several consecutive days, according to population size and wanted margin of error, to be representative and useful. 相似文献12.
13.
动物模型在荷斯坦牛遗传评定上的应用 总被引:1,自引:0,他引:1
本研究应用动物模型BLUP法在微机上评定了北京地区1965 ̄1992年间出生的荷斯坦牛41080头,建立了一套荷斯坦牛的动物模型评定系统。迭代求解采用间接解法,在阅读数据文件时进行。对于管理组、公牛与牛场互作、永久环境效应,采用Gauss-Seidel迭代法,对于动物个体和遗传组效应,采用不完全的Jacobi迭代法。提供预期传递力、父母传递力均数、预期生产力、表型均值等有用的遗传和生产信息。在配备 相似文献
14.
The aim of the present research was to develop a fuzzy logic model for classification and control of mastitis for cows milked in an automatic milking system. Recording of data was performed on the University of Kiel's experimental dairy farm “Karkendamm”. A data set of 403,537 milkings from 478 cows was used. Mastitis was determined according to three different definitions: udder treatments (1), udder treatment or somatic cell counts (SCC) over 100,000/ml (2) and udder treatment or SCC over 400,000/ml (3). Mastitis alerts were generated by a fuzzy logic model using electrical conductivity, milk production rate and milk flow rate as input data. To develop and verify the model, the data set was randomly divided into training data (284,669 milkings from 319 cows) and test data (135,414 milkings from 159 cows). The evaluation of the model was carried out according to sensitivity, specificity and error rate. If the block-sensitivity was set to be at least 80%, the specificities ranged between 93.9% and 75.8% and the error rate varied between 95.5% and 41.9% depending on mastitis definition. Additionally, the average number of true positive cows per day ranged from 0.1 to 7.2, and the average number of false negative positive cows per day ranged from 2.4 to 5.2 in an average herd size for the test data of 39.7 cows/day. The results of the test data verified those of the training data, indicating that the model could be generalized.
Fuzzy logic is a useful tool to develop a detection model for mastitis. A noticeable decrease in the error rate can be made possible by means of more informative parameters. 相似文献
15.
Masamitsu TOMIYAMA Shouhei KUBO Tsutomu TAKAGI Keiichi SUZUKI 《Animal Science Journal》2011,82(5):621-626
Genetic improvement of the reproductive performance of pigs is important for pig breeding despite their low heritabilities. The objectives of this study were to investigate the effectiveness of selection concerning reproductive traits and to determine the optimal number of parity records required for accurate estimation of breeding values (BVs) in the open population of a commercial pig breeding company. The study used records of 2220 purebred Large White pigs (9845 litters) farrowed between 1998 and 2009 in the two herds of the Pacific Ocean Breeding Co. Ltd. The traits studied included farrowing interval (FI), total number of piglets at birth (TNB), average weaning weight per litter (AWW), and raising rate (RR). A statistical model was applied to the 4‐trait repeatability animal model. The heritabilities of FI, TNB, AWW and RR were low. The genetic trends in TNB (h2 = 0.09) showed approximately 1.0 increase in 6 years from 2003 to 2008. The predicted error variances indicated that up to fourth parity records are necessary for accurate genetic evaluation. The present study results indicated that even reproductive traits with low heritability can be improved. 相似文献
16.
不同模型估计中国荷斯坦牛生产寿命遗传参数 总被引:1,自引:0,他引:1
旨在估计中国荷斯坦牛生产寿命遗传参数,同时比较不同模型的预测可靠性和稳定性。本研究使用单性状动物模型、单性状公畜模型和多性状动物模型对北京地区29个牧场90049头中国荷斯坦母牛的生产寿命数据进行遗传参数估计,所有模型均考虑了场、出生年季、头胎产犊月龄组的固定效应,个体加性遗传效应(动物模型)或父亲遗传效应(公畜模型)的随机效应和残差效应。结果表明,单性状动物模型和单性状公畜模型估计的生产寿命遗传力分别为0.052和0.047,多性状动物模型估计的遗传力较为稳定,介于0.057与0.069之间,多性状动物模型的遗传相关在0.779~0.998之间。对于存在大量在群个体(删失记录)的数据,使用基于前三胎数据的多性状动物模型较为合适,模型预测稳定性更高。本研究对中国荷斯坦牛生产寿命进行了遗传评估,为提高牧场效益、实现平衡育种提供了理论基础。 相似文献
17.
提高原料奶卫生指标的三种方法 总被引:3,自引:0,他引:3
提高原料奶的卫生指标根源在奶牛场,但大多数奶农并没有意识到奶牛场规范挤奶程序,保护牛舍环境舒适、干净,维护和清洁挤奶设备是生产优质原料奶的关键,是奶牛场中提高牛奶卫生质量的重要途径。 相似文献
18.
The genetic improvement in pig litter size has been substantial. The number of teats on the sow must thus increase as well to meet the needs of the piglets, because each piglet needs access to its own teat. We applied a genetic heterogeneity model to teat counts in pigs, and estimated a medium heritability for teat counts (0.35), but found a low heritability for residual variance (0.06), indicating that selection for reduced residual variance might have a limited effect. A numerically positive correlation (0.8) was estimated between the breeding values for the mean and the residual variance. However, because of the low heritability of the residual variance, the residual variance will probably increase very slowly with the mean. 相似文献
19.
Hirofumi NAKAOKA Claude GAILLARD Takayuki IBI Yotaro SASAE Yoshiyuki SASAKI 《Animal Science Journal》2008,79(6):645-654
Heterogeneity of variance among subclasses of an effect is a potential source of bias in genetic evaluation. Degrees of the heterogeneity of variance among farm‐market‐year‐sex (FMYS) subclasses for carcass weight, beef marbling standard number, rib‐eye area, rib thickness and subcutaneous fat thickness were investigated in Japanese Black cattle. Consequences of adjusting for the heterogeneity on the predicted breeding values (PBVs) or on the genetic indexes derived from the PBVs of the five carcass traits were assessed. A total of 57 461 records were collected between 1997 and 2002 from steers and heifers fattened at farms across Japan. These records were grouped into 1591 FMYS subclasses. Bartlett's test showed that the degree of the heterogeneity of variance among the FMYS subclasses was sizeable in all traits (P < 0.0001). By applying a two‐step adjustment procedure it was possible to reduce the standard deviation, the coefficient of variation and the Gini coefficient of the phenotypic variances by 67.5% to 75.0% in the different traits. The applied adjustment caused a substantial re‐ranking of elite dams in the PBV for each trait as well as in the genetic index. This study provided evidence that the applied adjustment reduces the bias in the PBVs due to heterogeneous variances and increases the accuracy of bull‐dam selection. 相似文献
20.
Toshimi Baba Yusaku Gotoh Satoshi Yamaguchi Satoshi Nakagawa Hayato Abe Yutaka Masuda Takayoshi Kawahara 《Animal Science Journal》2017,88(8):1226-1231
This study aimed to evaluate a validation reliability of single‐step genomic best linear unbiased prediction (ssGBLUP) with a multiple‐lactation random regression test‐day model and investigate an effect of adding genotyped cows on the reliability. Two data sets for test‐day records from the first three lactations were used: full data from February 1975 to December 2015 (60 850 534 records from 2 853 810 cows) and reduced data cut off in 2011 (53 091 066 records from 2 502 307 cows). We used marker genotypes of 4480 bulls and 608 cows. Genomic enhanced breeding values (GEBV) of 305‐day milk yield in all the lactations were estimated for at least 535 young bulls using two marker data sets: bull genotypes only and both bulls and cows genotypes. The realized reliability (R2) from linear regression analysis was used as an indicator of validation reliability. Using only genotyped bulls, R2 was ranged from 0.41 to 0.46 and it was always higher than parent averages. The very similar R2 were observed when genotyped cows were added. An application of ssGBLUP to a multiple‐lactation random regression model is feasible and adding a limited number of genotyped cows has no significant effect on reliability of GEBV for genotyped bulls. 相似文献