Animal genetic resource trade flows: Economic assessment

Throughout human history, livestock producers have relied on a vibrant international exchange of genetic resources to achieve improvements in the quality and productivity of their animals. In recent years, however, some observers have argued that changes in the legal, technological, and economic environment now imply that international exchanges of animal genetic resources (AnGR) systematically benefit rich countries at the expense of poor countries. It is argued that international flows of AnGR are displacing the indigenous animal genetic resources of developing countries, and also that the genetic wealth of the developing world is being expropriated by rich countries.In reaction, there have been growing calls for limitations and/or barriers to the exchange of animal genetic resources. These discussions, however, seem to be based on limited information about the magnitude and direction of current trade flows in AnGR. This paper offers an analysis of AnGR trade flows from 1990 to 2005. The paper draws on national-level data from 150 countries that reported information to the United Nations Statistics Division. Three major trade categories were evaluated: live cattle and pigs for breeding, and cattle semen.Over the period studied, Europe and North America were the primary exporters of genetic resources for the species evaluated. OECD countries accounted for 98.7, 92.5, and 95% of cattle semen, live cattle, and swine exports in 2005, respectively. In evaluating the direction of trade between developed (North) and developing (South) countries, North–North trade had the largest magnitude, followed by North–South, South–South, and South–North. The data do not support the notion that Southern genetic resources are being used on a large scale in the North. We believe that importation from South to North is limited by the vast discrepancies in production efficiency and production systems between countries in the North and South.Given the low volume of South–North exchange, it seems doubtful that sufficient revenues could be acquired through a “benefit-sharing mechanism” to have any substantial impact on in situ or ex situ conservation efforts, or to generate benefits for poor livestock keepers in developing countries. We question whether global agreements or restrictions on trade will achieve the desired goal of conserving rare breeds and threatened genetic resources. We also doubt whether these agreements will succeed in improving the well-being of the poor. We suggest that resources instead be urgently employed for conservation and that more direct measures should be taken to aid poor farmers, ranchers, and herders in their efforts to conserve genetic resources.     

PRNP haplotype and genotype frequencies in Brazilian sheep: issues for conservation and breeding programs

Polymorphisms of PRNP gene have been strongly correlated to the susceptibility/resistance to scrapie in sheep. Variants at the coding positions 136, 154 and 171 have been the most frequently associated to susceptibility to classical scrapie. The aim of this study was to estimate PRNP haplotype and genotype frequencies in a sample of 1400 sheep from 13 different breeds that are representative of the main production regions in Brazil. A total of four different alleles (ARR, ARQ, AHQ and VRQ) and nine genotypes were observed at different frequencies among the investigated breeds. There were distinct patterns of allelic distribution between naturalized and commercial/specialized breeds and different geographic regions. These results will influence the development and management of breeding and conservation programs and will help to develop Brazilian efforts to avoid scrapie epidemics.     

Inference of admixture in the endangered Blanca Cacereña bovine breed by microsatellite analyses

Blanca Cacereña cattle is the most threatened Spanish bovine breed. Although a Conservation Plan, exists, the little reproductive success and some chromosome abnormality were observed in the breed making it advisable to extend the genetic basis of the animals opening up the recorded herd book to new animals from local farms. However, the crossing with meat breeds like Charolais cattle is used to improve the commercial product. We used 30 microsatellites to determine the Charolais genetic influence in the current herds by the identification of the hybrids and to recognize new “purebred” animals in the “Blanca Cacereña” population. Blood samples were taken from animals of Blanca Cacereña bovine breed (112 animals with pedigree and 68 without pedigree), Charolais breed (60 animals) as a breed used commercially in crosses with Blanca Cacereña, and Retinta breed (60 animals) as a reference population. STRUCTURE analyses were performed with or without prior population information to assign individuals to breed, identifying admixed individuals, and inferring their ancestry. We have found that 37/68 animals without pedigree were purebred. Our results will be useful to manage a conservation plan of the breed, preserving the characteristic genetic pool and avoiding its extinction.     

Estimation of genetic parameters and season effects for semen traits in three pig breeds of South China

The economic profitability of a boar station largely depends on semen quantity and quality traits. However, genetic analysis of semen traits has not yet been done in the boar population in China. In this study, we aimed to estimate genetic parameters for semen traits and the influence of seasons on these traits by using data of Duroc, Landrace and Yorkshire boars in South China. The following four semen traits were analysed: semen volume (ml; VOL), sperm concentration (10⁶/ml; DEN), sperm motility (MOT) and percentage of abnormal sperm (ABN). Genetic parameters and season effects were estimated simultaneously for each breed by using a multiple‐trait (4 × 4) repeatability animal model. The four traits had a moderate heritability with average estimates of 0.23, 0.28, 0.26 and 0.17 across the three breeds, respectively. The estimates of genetic correlations among four traits differed in the three breeds. In particular, in Yorkshire, the four traits were nearly genetically independent. The season of collecting semen had a significant impact on these four semen traits except ABN in Duroc (Bonferroni adjusted p < 0.05/6). The moderate heritabilities indicate the possibility of effective selection of boars for semen traits. Different genetic correlations for the three breeds suggest that the selection strategy for the four traits should be investigated separately for each breed. Some necessary actions should be taken to reduce the influence of seasons on semen traits.     

Using expected allele number as objective function to design between and within breed conservation of farm animal biodiversity

Conservation of genetic diversity in farm animal species can be achieved by preventing extinction of breeds and by reducing genetic drift within breeds. It is suggested to use the expected number of alleles segregating in the species after a given time period as objective function in the design of conservation strategies. A formal approach is presented to predict this quantity based on marker information, accounting for extinction probability of breeds and effective population size within breeds as the major component of genetic drift. Based on this model, relative efficiency of different strategies of diversity conservation can be quantified. Formulas are given to derive the marginal expected number of alleles with respect to genetic drift within population and extinction probability, respectively. The suggested approach is illustrated with an example of 13 European cattle breeds. With the assumed parameters, drift is shown to be the major force leading to loss of alleles, and different breeds are prioritized for activities to reduce risk of extinction and for measures to reduce genetic drift, respectively. Although different aspects of the model need to be further refined, the suggested methodology provides a general and flexible tool to derive the optimum conservation strategy in various scenarios.     

Molecular and pedigree analysis applied to conservation of animal genetic resources: the case of Brazilian Somali hair sheep

The first registers of Somali sheep in Brazil are from the beginning of the 1900s. This breed, adapted to the dry climate and scarce food supply, is restricted in the northeast region of the country. Molecular marker technologies, especially those based on genotyping microsatellite and mtDNA loci, can be used in conjunction with breeding (pedigree analysis) and consequently the maintenance of genetic variation in herds. Animals from the Brazilian Somali Conservation Nuclei from Embrapa Sheep and Goats in Ceará State were used to validate genetic monitoring by traditional pedigree methods and molecular markers. Nineteen microsatellite markers and 404 base pairs from the control region of mtDNA were used. For total herd diversity, an average 5.32 alleles were found, with expected heterozygosity of 0.5896, observed heterozygosity of 0.6451, 0.4126 for molecular coancestrality, and coefficient of inbreeding (F _IS) was −0.095. Comparing molecular coancestrality means over the years, there was a consistent increase in this parameter within the herd, increasing from 0.4157 to 0.4769 in 2 years (approx. 12% variation). Sixteen mtDNA haplotypes were identified. Inbreeding and other estimates from genealogical analyses confirm the results from molecular markers. From these results, it is possible to state that microsatellites are useful tools in genetic management of herds, especially when routine herd recording is not carried out, or there were gaps in recent generations. As well as pedigree control, genetic diversity can be optimized. Based on the results, and despite herd recording in the herd of Brazilian Somali of Embrapa Sheep and Goats, additional management measures need to be carried out in this herd to reduce inbreeding and optimize genetic variation.     

Heat tolerance in naturalized Brazilian cattle breeds

Research carried out at the Sucupira Farm of Embrapa Recursos Genéticos e Biotecnologia, in Brasilia-DF, aimed to evaluate heat tolerance in five naturalized and two exotic breeds of cattle, at different temperatures and humidity, based upon physiological and blood parameters. The data collected included heart rate (HR), rectal temperature (RT), respiratory rate (RR), and sweating rate (SR). Blood was also collected for hemogram analysis and cortisol level. The measurements were taken at 7 am and at 2 pm after the animals were exposed to the sun, with water ad libitum. This procedure was repeated for six days, three in the middle of the dry season when temperatures and humidity were lower and three at the start of the rainy season when temperatures and humidity were higher. Significant statistical differences were observed in RR and HR for day, breed and animal within breed. The analysis indicated that the Junqueira and Nellore breeds are most adapted to climatic conditions in Brasilia; while Mocho Nacional and Holstein breeds were the least adapted. Although sample size is limited, these results are important to identify which breeds are most resistant towards climatic variations observed in the Brasilia region, as well as which physiological parameters are the most indicated for use in animal breeding programs intended to select animals and breeds adapted to thermal stress conditions.     

Developing a typology for local cattle breed farmers in Europe

Recognizing cultural diversity among local breed farmers is crucial for the successful development and implementation of farm animal genetic resources FAnGr conservation policies and programmes. In this study based on survey data collected in the EUropean REgional CAttle breeds project from six European countries, a typology of local breed farmers was designed and profiles for each of the farmer types were developed to assist these policy needs. Three main farmer types were constructed: production‐oriented, product and service‐oriented and hobby‐oriented farmers. In addition, seven subtypes were characterized under the main types: sustainable producers, opportunists, multi‐users, brand makers, traditionalists, pragmatists and newcomers. These types have many similarities to the ‘productivist’, ‘multifunctional’ and ‘post‐productivist’ farmer types. The typology not only reveals the high level of diversity among local cattle breed farmers in Europe, which presents an opportunity for the in situ conservation of animal genetic resources, but also a challenge for policy to meet the differing requirements of the farmer types.     

Conservation priorities and optimum allocation of conservation funds for Vietnamese local chicken breeds

The objectives of this study were to estimate conservation potential of Vietnamese local breeds and to investigate optimal allocation of conservation funds to maximize genetic diversity conserved between these breeds. Twenty-nine microsatellites were genotyped in 353 individuals from nine Vietnamese local chicken breeds and two chicken breeds of Chinese origin. The Vietnamese chicken breeds were sampled from the northern and southern parts of Vietnam while the two Chinese breeds have been kept as conservation flocks at the National Institute of Animal Sciences, Hanoi. The Weitzman approach was used to assess alternative strategies for conserving genetic diversity between breeds. Three different models, which reflect the range of possible functions in typical conservation situations, were applied. An average extinction probability of 48.5% was estimated for all Vietnamese chicken breeds. The highest conservation potential was found in the Te, Dong Tao and Ac chicken breeds, whereas the lowest corresponding values were observed in the Ri and Mia chicken breeds. The conservation funds were mainly allocated to the same three breeds (Te, Dong Tao and Ac) under all three models. This study suggests that conservation potential of the Vietnamese chicken breeds varies considerably. Population priorities for allocation of conservation funds in this study do not depend on the cost model used. The three breeds (Te, Dong Tao and Ac) with the highest conservation potential should be the prime candidates to be allocated conservation funds if the conservation budgets are limited.     

Conservation programmes for African cattle: design, cost and benefits

Information on costs and benefits of conservation programmes for cattle is scarce in the literature and mainly available for Europe. This study aims at simulating cost of and benefits from different kinds of conservation programmes designed for indigenous African cattle. The programmes include installation of a herdbook and activities to promote the breed (HB), in situ conservation with a sire rotation scheme (IS), cryoconservation of semen (CC) and CC combined with in situ conservation (IC). The results indicate that cost of the analysed conservation programmes was generally higher than those reported in the literature for comparable schemes. If cost per effective population size conserved is considered, programmes analysed in this study do not appear to be more expensive. The proposed rotation scheme in IS can be applied to many different production systems and prove to be effective with regard to low increase in kinship. Reduction in extinction probability is found to be higher for conservation programmes that strongly involve farmers and give them part of the responsibility for the breeding population. IC was most efficient with regard to cost per effective population size conserved. However, if cost per reduction in endangerment is considered as criterion for the efficiency of a programme, IS, HB and CC are superior to IC. These findings suggest that decisions on conservation programmes should be based on multiple criteria, and not just on cost per effective population size.     

地方、培育、引入品种资源的保存与发展的研究进展

作者就20世纪 80年代以来我国多次畜禽资源调查的结果作了详细的介绍,报道了576个品种在近30年来的变迁情况。除了常见的马、驴、黄牛、水牛、大额牛、牦牛、绵羊、山羊、猪、鸡、鸭、鹅、特禽的品种以外,尚有7种,如骆驼、兔、梅花鹿、马鹿、水貂、貉、蜂等动物。其中地方品种426个,培育品种73个,引入品种77个。已有19个地方品种灭绝,37个受严重威胁。作者回顾了20世纪末开始应用遗传检测手段,包括个体、细胞、蛋白质和分子水平4个层次的研究进展。证明多层次综合研究才能反映品种的全貌。建议资源调查中要着重选育强度带来的影响,品种调查提纲必须周密,要以品种特征和外貌为主,与遗传分析相结合,才可能提出可行的保种和开发方案。作者论证了配子和胚胎超低温保存、DNA保存的前景,并指出与企业合作进行保种的动向,国家应长期重点加以支持。     

Drift across the Atlantic: genetic differentiation and population structure in Brazilian and Portuguese native goat breeds

Brazilian goat breeds are believed to derive mainly from animals brought by Portuguese settlers since the 16th century. We used microsatellite markers in a sample of 436 animals to study genetic variability and differentiation of the six Portuguese (PT) and six Brazilian (BR) goat breeds currently recognized in the two countries. These breeds were also compared with an outgroup represented by a sample of Alpine (ALP) goats. The effective number of alleles and allelic richness were slightly higher in PT than in BR breeds. The global F(ST) was nearly 0.11 when PT and BR breeds were considered, with a mean pairwise F(ST) of about 0.03 among PT breeds, 0.07 among BR breeds and 0.15 between PT and BR breeds. The dendrogram illustrating relationships between populations and the correspondence analysis indicate the existence of two very distinct clusters, corresponding to the countries of origin of the breeds studied, which are nearly equidistant from the Alpine outgroup. The analysis with structure confirmed the separation between PT and BR breeds but suggests that some BR breeds, especially Graúna and Canindé, may share a common ancestry with PT breeds. The divergence observed between PT and BR breeds may result from founder effects and genetic drift but could also reflect the introduction in Brazil of goats originating from other regions, e.g., West Africa.     

Community-based interventions for the use and conservation of animal genetic resources: the case of indigenous scavenger chicken production in Benin

Scavenging chicken production in Africa is important for the livelihood of the poor. In most countries, these low inputs, low output systems employ local breeds making use of the feeding resources available in the household. However, their replacement with introduced exotic breeds with higher productivities represents a risk for their conservation. Here, we present a simulation model to evaluate the impact of community-based interventions aiming to improve the profitability of local chicken breeds and promote their use and conservation. The results indicate that under the current conditions, farmers producing exotic chicken are able to sell more animals in a one year period; however the market price of local chicken makes their production more profitable. Vaccination campaigns significantly reduce the mortality rate of both breeds, having a positive effect on producers’ income but its impact on animal off-take is larger for exotic breeds, and the availability of feeding resources is the limiting factor as the flock size increases. The results of the intervention are positive in terms of increasing farmers’ income but do not clearly contribute to the conservation of indigenous breeds since after the vaccination campaign, the gap between the profitability of indigenous and exotic breeds is reduced. The simulation model indicates that under the current conditions, the conservation of indigenous chicken breeds in Benin is maintained by the existence of distinct niche markets with consumers able to pay higher prices for indigenous chicken. Policies for the conservation of chicken genetic resources in Benin are discussed.     

Genetic Characterization of Mangalarga Marchador Breed Horses Based on Microsatellite Molecular Markers

The Mangalarga Marchador (MM) horse breed has expressive importance in the Brazilian economy. Thus, the aim of this study was to investigate diversity in the MM breed. A database with a total of 3,193 genotyped horses was used (MM, n = 2,829; Andalusian – AND, n = 67; Pure Blood Lusitano – LUS, n = 43; English Thoroughbred – THO, n = 54; Arabian – ARA, n = 99; Campolina – CAM, n = 61; and Mangalarga – MAN, n = 40) for 13 microsatellite. Diversity parameters were estimates, such as mean number of alleles (Nm_a) and the number of rare alleles (AR), expected heterozygosity (He), F statistics, genetic distances, Hardy-Weinberg equilibrium test (HWE), population structure, and others. The Nm_a was 10.85, the AR was prevalent in the MM, and the He was 0.7402. In MM, the values of Fis (−0.0195), Fit (0.0566), Fst (0.0748), and deviations of HWE were observed. The genetic distances of the ARA and THO breeds with the other breeds were greater than the distances between the Brazilian breeds and between these and the breeds in the Iberian Peninsula. The population structure indicated that MM was substructured, yet there were some more genetically defined breeding farms. The genetic diversity is satisfactory for MM conservation, but the population is substructure, and parameters indicate moderate gene flow and the existence, though few, of crosses with other horse breeds. Immediate implementation of a genetic breeding program is required, especially seeking to conserve the structure of the MM breed as a well-defined genetic entity.     

Use of multivariate analyses for determining heat tolerance in Brazilian cattle

Adaptability can be evaluated by the ability of an animal to adjust to environmental conditions and is especially important in extreme weather conditions such as that found in tropical Brazil. A multivariate analysis using physical and physiological traits in exotic (Nellore and Holstein) and naturalized (Junqueira, Curraleira, Mocho Nacional, Crioula Lageana, and Pantaneira) cattle breeds was carried out in the Federal District of Brazil to test and determine which traits are important in the adaptation of animal to heat stress as well as the ability of these traits and statistical techniques to separate the breeds studied. Both physical and physiological traits were measured on three occasions and included body measurements, skin and hair thickness, hair number and length, pigmentation, sweat gland area as well as heart and breathing rates, rectal temperature, sweating rate, and blood parameters. The data underwent multivariate statistical analyses, including cluster, discriminate, and canonical procedures. The tree diagram showed clear distances between the groups studied, and canonical analysis was able to separate individuals in groups. Coat traits explained little variation in physiological parameters. The traits which had higher discriminatory power included packed cell volume, shoulder height, mean corpuscular volume, body length, and heart girth. Morphological and physiological traits were able to discriminate between the breeds tested, with blood and size traits being the most important. More than 80% of animals of all breeds were correctly classified in their genetic group.     

Mitochondrial DNA diversity,origin, and phylogenic relationships of three Chinese large-fat-tailed sheep breeds

China is abundant of sheep genetic resources. A total of 55 sequences containing the Ovis aries mtDNA D-loop of three large-fat-tailed sheep breeds, named Lanzhou, Tong, and Han were retrieved from GenBank to investigate their genetic diversity, origin, and phylogenetic evolution. The results showed that the sheep breeds in our study proved to be extremely diverse, the average haplotype diversity and nucleotide diversity were 0.987 ± 0.006 and 0.03956 ± 0.00206, respectively. The 55 sequences gave 39 different haplotypes. Phylogenetic analyses revealed that there were three distinct mtDNA haplogroups: A, B, and C, in which haplogroup A was predominant and had experienced population expansion events. Clustering analysis showed that the large-fat-tailed sheep breeds clustered into one group and were closely related to the Mongolian sheep and then European mouflon sheep (Ovis musimon). The results contribute to the knowledge of Chinese sheep breeds and the plan of conservation programs on large-fat-tailed sheep.     

中国绵、山羊的遗传资源保护及对策

作者论述了中国绵、山羊的品种资源现状、遗传资源保护方法及存在问题,并针对绵、山羊的遗传资源保护问题提出几点建议。     

Animal genetic resource trade flows: The utilization of newly imported breeds and the gene flow of imported animals in the United States of America

Animal germplasm exchange has recently received attention as a product of the FAO's State of the World's Animal Genetic Resources effort. Some have advocated a need to explore policies and regulations on the exchange of germplasm (e.g., Hiemstra, S.J., Drucker, A., Tvedt, M., Louwaars, N., Oldenbroek, J., Awgichew, K., Kebede, S., Bhat, P., da Silva Mariante, A. 2006. Exchange, use and conservation of animal genetic resources: policies and regulatory options. Centre for Genetic Resources. Wageningen Univ., the Netherlands, pp. 1­43). However, there has been little comprehensive assessment of either the economic or genetic impact of introduced germplasm into national populations. As a result, much of the discussion of gene flows has been based on assumptions and generalizations. The objective of this paper is to evaluate the genetic impact of germplasm imported into the United States during the last 25 to 50 years. The paper considers both new breeds (Meishan pigs, Tuli cattle, and Boer goats) and new animals within existing breeds (Limousin and Jersey cattle). Of the new breeds recently imported only one had an impact on US animal agriculture. Neither the Tuli nor the Meishan has impacted the US livestock industry. It appears that these breeds were initially viewed as attractive because of single traits, but producers did not find it attractive to adopt the new breeds based on these specific traits. In the end, these breeds did not prove competitive in the US under the current set of market conditions. This result would indicate that importation of new genetic resources due to a single trait of interest is not a viable importation strategy. By contrast, the Boer goat exhibited a number of production characteristics which made it desirable to US producers and thereby allowed the breed to become well established. A second portion of the study evaluated the importation and parentage pattern of Limousin cattle as they became established in the U. S. and the gene flow of imported Jersey cattle since the 1950′s. In both cases, the study relied on pedigree analysis. Over the past fifty years, Jersey cattle have been sporadically imported from various countries, but no imported animal has had an overpowering effect on the population. It appears that by the great-grand progeny level, the genes from imported animals are diminishing rather than increasing in the population. In evaluating the predicted transmitting abilities for imported cattle relative to high and moderately ranked domestically bred cattle, there were significant differences between these groups for milk production. This would be sufficient to explain why the impact of the imported cattle diminished. The results of our analysis at both the breed and individual level underscore the speculative nature of germplasm importation — even within breeds where there is a great deal of information available about production characteristics. From this analysis, we conclude that successful importation of new breeds into the US must be based on a large number of production characteristics; importation for a single characteristic (e.g., high prolificacy) while the breed is deficient in other areas does not lead to the breed's adoption. While not fully explored in this work, it appears that initial interest and acceptance from the private sector is crucial for breed acceptance, as the Boer goat demonstrates. Within an existing breed, importation of individual animals still appears to have a relatively high degree of risk and is dependent upon the importer's ability to pick viable candidates. However, once animals are imported their progeny must effectively compete with the domestic population, or else their genetic contribution will rapidly diminish.     

Genetic diversity,population structure,and correlations between locally adapted zebu and taurine breeds in Brazil using SNP markers

Genetic diversity is one of the most important issues in studies on conservation of cattle breeds and endangered species. The objective of this study was to estimate the levels of genetic differentiation between locally adapted taurine (Bos taurus taurus) and zebu (Bos taurus indicus) breeds in Brazil, which were genotyped for more than 777,000 SNPs. The fixation index (F _ST), principal component analysis (PCA), and Bayesian clustering were estimated. The F _ST highlighted genetic differentiation between taurine and zebu breeds. The taurine lines, Caracu and Caracu Caldeano, had significant genetic differentiation (F _ST close to 5%) despite their recent selection for different uses (meat and milk). This genetic variability can be used for conservation of locally adapted animals, as well as for breeding programs on zebu breeds. Introgression of zebu in locally adapted breeds was identified, especially in Curraleiro Pé-Duro breed. The Gyr breed, however, had low breed purity at genomic level due to its very heterogeneous mixing pattern.     

Simulation of genetic and environmental interaction of three tropical hair sheep breeds.

The Texas A&M Sheep Simulation Model was used to examine genetic-environmental interactions (GEI) among Brazilian Somali, Morada Nova, and Santa Ines breeds and type and level of feed supplement in northeast Brazil. Two sets of simulations were conducted to examine effects of different supplement quality (napier grass vs cunha legume) and quantity (napier grass only). The analyses indicated the benefits from supplementing lambs at weaning during the dry season and from supplementing lactating ewes at the beginning of lambing season when forage is scarce. The cunha legume was an effective supplement, but choosing between cunha legume and napier grass is an economic consideration. Increasing the amount of napier grass supplement per ewe from 200 g/d to 400 g/d resulted in a significant GEI (i.e., different levels of response such as lamb mortality rate, lamb weaning weight, and lambing rate for different breeds). The Brazilian Somali was the least responsive, whereas the Santa Ines was the most responsive to supplementation. It was concluded that the level of supplement should be higher for the Santa Ines and Morada Nova than for the Somali. The amount of supplement should be regulated so that it neither substitutes for nor lowers the utilization of the native caatinga forage. None of the breeds was simulated to be superior in all environments. Thus, considering the wide range of resources of individual farmers, any one of these breeds may be the preferred choice, depending on the individual set of production resources.