Progression of chocolate spot (Botrytis fabae) and grain yield of faba bean as influenced by integration of fungicide rate and host resistance in Southern Ethiopia

Journal of Crop Science and Biotechnology - Chocolate spot is economically the most important and destructive disease of faba bean. Field studies were conducted to develop and determine an...     

Competition,growth and yield of faba bean (Vicia faba L.)

This paper reviews current knowledge regarding the influence of plant density on the growth and yield of the faba bean crop (Vicia faba L.). An analysis is also made of sowing rate and other factors that may modify optimum plant density, including environmental conditions; in this sense, should be made a differentiation between faba crops grown in temperate conditions and those grown in Mediterranean and semi-arid conditions. The genotype also prompts variations in optimum plant density, depending on the botanical type (mayor, equina or minor) and the growth habit (determinate versus indeterminate) of the cultivar selected. Sowing date also influences optimum seeding rate, which is lower for autumn–winter sowing under temperate and Mediterranean conditions and increases as the sowing date is delayed. For the spring-sown crops typical of temperate conditions, optimum plant density will be higher due to the shorter growing season. With a longer growing season and under optimum environmental conditions, there is normally no additional response to densities over 20 plants m⁻², while in suboptimal conditions, optimum plant density may increase to over 60 plants m⁻². Although the faba bean crop displays considerable plasticity in response to variations in plant density, mainly with regard to number of pods per square meter, it is not wholly clear to which component of yield this should really be ascribed. Number of stems per plant appears to be the most influential factor, although further research is required to confirm this.     

Breeding and genomics status in faba bean (Vicia faba)

Faba bean is an important legume crop because of its high‐yield potential and nutrition‐dense grains. There have been significant achievements in faba bean improvement in the last four decades, which led to the doubling of the global yield average. This study reviews the genetic diversity, the breeding methodologies, major achievement on biotic and abiotic traits, and the recent molecular approaches. The high genetic diversity among faba bean accessions has been useful for increasing yield potential of the crop. Substantial increase in yield potential can be gained through the development of cultivars in open pollinated conditions. In the past, many faba bean varieties that are tolerant to abiotic and biotic stresses were released worldwide. The average yield gains varied from 1.65% per year in Syria to 4.17% per year in Ethiopia. The recent advances in molecular technologies will be used to develop more coherent genetic maps, which would also facilitate assembling and ordering genomic scaffolds in a future genome‐sequencing effort and molecular‐breeding approach.     

Competition, growth and yield of faba bean (Vicia faba L.)

This paper reviews current knowledge regarding the influence of plant density on the growth and yield of the faba bean crop (Vicia faba L.). An analysis is also made of sowing rate and other factors that may modify optimum plant density, including environmental conditions; in this sense, should be made a differentiation between faba crops grown in temperate conditions and those grown in Mediterranean and semi-arid conditions. The genotype also prompts variations in optimum plant density, depending on the botanical type (mayor, equina or minor) and the growth habit (determinate versus indeterminate) of the cultivar selected. Sowing date also influences optimum seeding rate, which is lower for autumn–winter sowing under temperate and Mediterranean conditions and increases as the sowing date is delayed. For the spring-sown crops typical of temperate conditions, optimum plant density will be higher due to the shorter growing season. With a longer growing season and under optimum environmental conditions, there is normally no additional response to densities over 20 plants m⁻², while in suboptimal conditions, optimum plant density may increase to over 60 plants m⁻². Although the faba bean crop displays considerable plasticity in response to variations in plant density, mainly with regard to number of pods per square meter, it is not wholly clear to which component of yield this should really be ascribed. Number of stems per plant appears to be the most influential factor, although further research is required to confirm this.     

Detection and characterization of two new CMS systems in faba bean (Vicia faba) *

Wide crosses were made to identify new cytoplasmic male sterility (CMS) systems in faba beans, based on the interaction of cytoplasm with restorer and maintainer alleles. A total of 330 F₁ hybrids were produced in both reciprocal forms. Male sterile segregates were observed in one reciprocal version in the F₂ generation of six crosses. Two of these crosses with female parents originating from Afghanistan and Egypt expressed stable male sterility in subsequent backcross generations. Based on the female parents of the two crosses, these two CMS systems were designated CMS 199 and CMS 297. CMS 199 was more stable than CMS 297 during backcross generations and across different environments. Maintainer and restorer lines for both CMS systems were identified. Lower expression of male sterility occurred in CMS 297 in the greenhouse during the winter generations than in isolation cages during the summer generations, which may be utilized to maintain male sterile lines by selfing. Regarding practical applications, the CMS 199 shows great promise for hybrid breeding in faba beans.     

Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba)

To develop a high density linkage map in faba bean, a total of 1,363 FBES (Faba bean expressed sequence tag [EST]-derived simple sequence repeat [SSR]) markers were designed based on 5,090 non-redundant ESTs developed in this study. A total of 109 plants of a ‘Nubaria 2’ × ‘Misr 3’ F₂ mapping population were used for map construction. Because the parents were not pure homozygous lines, the 109 F₂ plants were divided into three subpopulations according to the original F₁ plants. Linkage groups (LGs) generated in each subpopulation were integrated by commonly mapped markers. The integrated ‘Nubaria 2’ × ‘Misr 3’ map consisted of six LGs, representing a total length of 684.7 cM, with 552 loci. Of the mapped loci, 47% were generated from multi-loci diagnostic (MLD) markers. Alignment of homologous sequence pairs along each linkage group revealed obvious syntenic relationships between LGs in faba bean and the genomes of two model legumes, Lotus japonicus and Medicago truncatula. In a polymorphic analysis with ten Egyptian faba bean varieties, 78.9% (384/487) of the FBES markers showed polymorphisms. Along with the EST-SSR markers, the dense map developed in this study is expected to accelerate marker assisted breeding in faba bean.     

Development and validation of a robust KASP marker for zt2 locus in faba bean (Vicia faba)

Faba bean has the potential to become a key food and feed protein crop in many areas of the world. The presence of tannins in its seed coat has limited the deployment of this crop as feed and food. The expression of either of the two recessive genes, zt1 and zt2, causes a great reduction of tannins from the seed coat and results in a white flower phenotype. Molecular markers linked to these loci are fundamental tools for speeding up the breeding of low-tannin varieties. The main aim of this study was to develop and validate a robust molecular marker linked to the zt2 locus. We used 176 recombinant inbred lines of the Disco/2 × ILB 938/2 cross at F₆ and genotyped those using 257 SNP (single nucleotide polymorphism) markers. An SNP marker associated with zt2 locus was found on faba bean chromosome 3 and was used to develop a high-throughput low-cost KASP (kompetitive allele-specific PCR) marker. The KASP marker can successfully discriminate low-tannin faba beans carrying zt2 from those carrying zt1 and wild-type alleles.     

Enzyme polymorphism in faba bean (Vicia faba L. minor) accessions. Genetic interpretation and value for classification

Three isozyme sytems glutamate oxaloacetate transaminase (GOT), superoxide dismutase (SOD), and malic enzyme (ME) have been analysed electrophoretically to study the diversity within and between 33 faba bean (V. faba L. type minor) accessions. For comparison, two cultivars (Vesuvio and Talo) were included in the study. Further objective of this study was to classify populations into genetic similar groups. SOD and GOT showed large variation, while ME presented minor change. Principal components, hierarchical cluster, and canonical discriminant analyses produced five groups with significant differences among them. The alleles with low frequency played a significant role in the discrimination. It was concluded that more detailed investigations regarding genetic aspects of enzyme diversity are needed to support the data here reported. This revised version was published online in July 2006 with corrections to the Cover Date.     

Improving adaptation to drought stress in white pea bean (Phaseolus vulgaris L.): Genotypic effects on grain yield,yield components and pod harvest index

Common bean (Phaseolus vulgaris L.) is the most important food legume crop in Africa and Latin America where rainfall pattern is unpredictable. The objectives were to identify better yielding common bean lines with good canning quality under drought, and to identify traits that could be used as selection criteria for evaluating drought‐tolerant genotypes. In all, 35 advanced lines were developed through single seed descent and evaluated with a standard check under drought and irrigated conditions at two locations over 2 years in Ethiopia. Grain yield (GY), pod number per m², seed number per m² and seed weight decreased by 56%, 47%, 49% and 14%, respectively, under drought stress. Eight genotypes had better yield with good canning quality under drought compared to the check. Moderate to high proportion of genetic effects were observed under drought conditions for GY and yield components compared to genotype × environment effects. Significant positive correlations between GY and pod harvest index (PHI) in drought suggest that PHI could be used as an indirect selection criterion for common bean improvement.     

Shortening the generation cycle in faba bean (Vicia faba) by application of cytokinin and cold stress to assist speed breeding

The aim of this study was to reduce the length of the breeding cycle for faba bean by accelerating seed setting. We examined the mode and time of exogenous 6-benzylaminopurine (BAP) (cytokinin) application, and cold treatments and their combinations in two faba bean genotypes. Acropetal node number of pod and seed set and pollen viability were recorded during the experiments. Application of BAP improved pollen germination. The application of 10^–5 M BAP 4 days after flowering increased seed set at the lower nodes. Cold treatment (8/4°C day/night for 2 days) after the onset of flowering induced the formation of more pods and faster pod set compared to the non-cold treatment. The time to first seed was significantly reduced, and pollen viability was increased in plants exposed to cold treatment. Increased pollen viability also showed a significant positive correlation with seed setting. The combinations of 10^–5 BAP and cold treatment together had similar and independent effects. These results will accelerate plant breeding in faba bean by providing additional tools for reducing generation time.     

Genome-wide association study of grain iron and zinc concentration in common bean (Phaseolus vulgaris)

Common bean is one of the widely consumed food security crop in Africa, Asia and South America. It is a rich source of protein, minerals and micronutrients. High genotype by environment interaction is one of the main challenge in breeding for high grain micronutrient concentration. The objective of this study was to estimate SNP markers associated with grain Fe and Zn concentration using 289 common bean genotypes and 11,480 SNP markers. The study revealed that 43 quantitative trait loci (QTLs) were associated with grain Fe and Zn concentration. Five quantitative trait nucleotides (QTNs), that is, QTN Fe_1.1, QTN Fe_6.3, QTN Fe_6.5, QTN Fe_10.3 and QTN Fe_11.6 were detected both at Haramaya and Melkassa locations. Two of the markers, that is, QTN Fe_6.3 and QTN Fe_6.5, were located on chromosome 06 while QTN Fe_1.1, QTN Fe_10.3 and QTN Fe_ 11.6 were residing on chromosomes 01, 10 and 11, respectively. Among these, QTN Fe_11.6 had a large and positive consistent effect across locations. The five stable QTNs along with the potential candidate genes could be used for Fe biofortification through marker assisted selection.     

Genetic variability of faba bean genotypes for chocolate spot (<Emphasis Type="Italic">Botrytis fabae</Emphasis>) resistance and yield

Faba bean (Vicia faba L.) has high utility as a food and soil fertility improving crop. One of the major fungal pathogens of faba bean is Botrytis fabae, the causative agent of chocolate spot. The disease affects significantly the leaf, stem, pod and seed of faba bean compromise its productivity in the smallholder farming sector. Nonetheless, there are limited resistant/tolerant faba bean varieties available and disease control technology options. Therefore, it was prudent to evaluate faba bean landraces for chocolate spot resistance. Fifty landraces together with ten improved varieties were evaluated both in the field and in the greenhouse under natural and artificial inoculation with previously selected aggressive Botrytis fabae isolate (Iso-016) from West Gojjam, in Ethiopia. There were highly significant differences (p?<?0.001) among the landraces for reaction to the disease and agronomic traits. Significant positive correlation was recorded between reaction of genotypes in the field and greenhouse disease data. The overall mean disease epidemics varied from 92.5 to 697.5 for the area under disease progress curve (AUDPC). The highest level of resistance was found in the ICARDA lines, ILB-4726, ILB-938 and BPL-710. Of all 18 landrace collections displayed significantly lower disease reaction than the susceptible check. However the resistance was moderate. The selected eighteen landraces will be recommended for use in breeding for chocolate resistance. Overall, resistance was highly heritable, suggesting that phenotypic selection can be exploited to improve chocolate spot resistance in faba bean varieties.     

A QTL atlas for grain yield and its component traits in maize (Zea mays)

Grain yield and its component traits are essential targets in maize breeding. These traits are genetically complex and controlled by a large number of quantitative trait loci (QTL). The aim of this study was to compile reported QTL and major genes for grain yield and its component traits in a QTL atlas, as a valuable resource for the maize community. To this end, 1,177 QTL related to maize yield were collected from 56 studies published between 1992 and 2018. These QTL were projected to genetic map “IBM2 2008 Neighbors”, which led to the identification of 135 meta-QTL. Some genomic regions appear to be hotspots for yield-related meta-QTL, often affecting more than one of the investigated traits. Moreover, we catalogued 20 major maize loci associated with yield and identified 65 maize homologs of 21 rice yield-related genes. Interestingly, we found that a significant proportion of them are located in meta-QTL regions. Collectively, this study provides a reference for QTL fine-mapping and gene cloning, as well as for molecular marker-assisted breeding of yield-related traits in maize.     

Effects of DEP1 on grain yield and grain quality in the background of two japonica rice (Oryza sativa) cultivars

Plant architecture is an accessible approach to achieving high-yield potential. The DENSE AND ERECT PANICLE 1 (DEP1) gene regulating panicle morphology, grain number per panicle, and nitrogen uptake and metabolism has been widely used for the breeding of high-yield rice in northern Chinese japonica varieties. However, there has been no consensus on the genetic effects of dep1 on grain yield and quality under different genetic backgrounds and growing environments. In the present study, we developed two sets of near-isogenic lines (NILs) of DEP1 (AKI-dep1, AKI-DEP1, LG5-dep1 and LG5-DEP1), each carrying the DEP1 region from either 'Liaogeng5' (LG5) or 'Akitakomachi' (AKI) in the AKI and LG5 backgrounds. Our results demonstrated that AKI-dep1/LG5-dep1 exhibited erect panicle and enhanced grain number per panicle, thereby consequently increasing grain yield, whereas they possessed inferior grain appearance compared with AKI-DEP1/LG5-DEP1 in the same background. However, the effects of dep1 on grain processing quality and eating and cooking quality varied with the background. These results provide useful information for high-yield erect panicle rice breeding by marker-assisted selection.     

Genomic prediction of grain yield in commercial Finnish oat (Avena sativa) and barley (Hordeum vulgare) breeding programmes

Genomic selection has been adopted in many plant breeding programmes. In this paper, we cover some aspects of information necessary before starting genomic selection. Spring oat and barley breeding data sets from commercial breeding programmes were studied using single, multitrait and trait-assisted models for predicting grain yield. Heritabilities were higher when estimated using multitrait models compared to single-trait models. However, no corresponding increase in prediction accuracy was observed in a cross-validation scenario. On the other hand, forward prediction showed a slight, but not significant, increase in accuracy of genomic estimated breeding values for breeding cohorts when a multitrait model was applied. When a correlated trait was used in a trait-assisted model, on average the accuracies increased by 9%–14% for oat and by 11%–28% for barley compared with a single-trait model. Overall, accuracies in forward validation varied between breeding cohorts and years for grain yield. Forward prediction accuracies for multiple cohorts and multiple years’ data are reported for oat for the first time.     

Evaluation of a collection of faba bean (Vicia faba L.) genotypes originating from the Maghreb for resistance to chocolate spot (Botrytis fabae) by assessment in the field and laboratory

Screening of 136 faba bean lines forresistance to chocolate spot caused by thefungus Botrytis fabae was conductedin field conditions with artificialinoculation. Detached leaves of thesegenotypes were also assessed for diseaseseverity after inoculation under controlledconditions with a B. fabaesuspension. The BPL710 and Aguadulcegenotypes were inserted as resistant andsusceptible checks, respectively. Diseasesymptoms were scored visually in bothexperiments. Diameter of lesions andproduction of spores were measured in thedetached leaf assay. The disease scoreindex and diameter of lesions were used tocalculate the area under the diseaseprogress curve (AUDPC) to measure thedisease progress. Significant differenceswere detected among genotypes for reactionto the disease in the field. However, nocomplete resistance was observed. Forhighly susceptible and highly resistantgenotypes, the laboratory assay generallyled to the same result as the field test,nevertheless, for more intermediate levelsthe agreement was weak. On detached leaves,diameter of lesions was significantlycorrelated to the AUDPC of disease scores(r = 0.89) and moderately correlated tosporulation (r = 0.52). The correlationbetween field AUDPC and detached leaf AUDPCof disease scores was low (r = 0.26). A lowcorrelation was also observed between fieldAUDPC and lesion size (r = 0.30) andbetween field AUDPC and sporulation (r =0.32). Among the 136 genotypes evaluated inthis study, nine were convincingly andhighly resistant in both tests. FRYM167 andFRYA58 genotypes were the most resistantwith low AUDPC of disease scores, low AUDPCof lesion diameter and low sporeproduction. These genotypes obviously havepartial resistance.     

Progeny testing of maize (Zea mays) genotypes for grain yield and yield components,Striga resistance and Fusarium oxysporum f.sp. strigae compatibility

Maize cultivars with resistance to Striga spp. and compatible to Fusarium oxysporum f.sp. strigae (FOS) are an economical, sustainable and environmentally Striga control option. This study's objective was to determine the type and magnitude of gene action controlling grain yield and yield-related components, Striga resistance, FOS compatibility and to select promising maize genotypes for an integrated Striga management approach. Ninety-nine experimental hybrids, generated by a North Carolina mating design II, were evaluated with and without FOS treatment at three Striga-infested sites in western Tanzania. The general (GCA), and specific combining ability (SCA) effects were significant (P < .05) for all the assessed traits with and without FOS except, Striga damage ratings eight (SDR8), and 10 (SDR10) weeks after planting with FOS treatment. FOS-treated progenies had fewer emerged Striga plants than untreated controls. Parental genotypes such as SITUKA M1, TZA4010, TZA4016, TZA4203, JL01, JL05, JL13 and JL17 showed negative GCA effects for all Striga parameters and positive GCA effects for grain yield. The new progenies and selected parents are recommended for Striga resistance breeding.     

Parent genome contribution and its relationship with grain yield in backcross-derived lines of soybean (Glycine max)

Introgression of yellow mosaic disease (YMD) resistance and effect of recurrent parent genome (RPG) on grain yield was studied in 84 soybean genotypes from four populations namely, F_2:7, BC₁F₆, BC₂F₅ and BC₃F₄ derived from cross JS335 x SL525. It was observed that in F_2:7, BC₁F₆, BC₂F₅ and BC₃F₄ derived lines, RPG contribution was 42.5%, 54.9%, 66.4% and 77.6%, respectively, which is significantly less than expected values. Linkage drag from donor parent with YMD resistance gene may be a possible reason for such deviations. Average grain yield per plant in F_2:7, BC₁F₆, BC₂F₅ and BC₃F₄ generations was observed as 13.0, 14.3, 14.9 and 16.1 g, respectively. It was observed that genotypes with more than 80% RPG observed to have both YMD resistance and good yield potential. Graphical genotyping (GGT) analysis revealed that maximum RPG was recovered in chromosomes 8 and 10 and maximum introgression occurred in chromosomes 6 and 19. Our results demonstrated that RPG was positively associated with yield as evident from yield increase with increase in RPG.