Spatial patterns of microbial denitrification genes change in response to poultry litter placement and cover crop species in an agricultural soil

Subsurface-banding manure and winter cover cropping are farming techniques designed to reduce N loss. Little is known, however, about the effects of these management tools on denitrifying microbial communities and the greenhouse gases they produce. Abundances of bacterial (16S), fungal (ITS), and denitrification genes (nirK, nirS, nosZ-I, and nosZ-II) were measured in soil samples collected from a field experiment testing the combination of cereal rye and hairy vetch cover cropping with either surface-broadcasted or subsurface-banded poultry litter. The spatial distribution of genes was mapped to identify potential denitrifier hotspots. Spatial distribution maps showed increased 16S rRNA genes around the manure band, but no denitrifier hotspots. Soil depth and nitrate concentration were the strongest drivers of gene abundance, but bacterial gene abundance also differed by gene, soil characteristics, and management methods. Gene copy number of nirK was higher under cereal rye than hairy vetch and positively associated with soil moisture, while nirS gene copies did not differ between cover crop species. The nirS gene copies increased when manure was surface broadcasted compared to subsurface banded and was positively associated with pH. Soil moisture and pH were positively correlated to nosZ-II but not to nosZ-I gene copy numbers. We observed stronger correlations between nosZ-I and nirS, and nosZ-II and nirK gene copies compared to the reverse pairings. Agricultural management practices differentially affect spatial distributions of genes coding for denitrification enzymes, leading to changes in the composition of the denitrifying community.     

Impact of a Variable Tungsten Pollution on the Elemental Uptake of Two Plant Species

A radish and a grass species were grown in identical substrates either unpolluted or polluted by tungsten (W) at 1, 5, and 10 μg/g levels of watering solutions during 1 month under controlled laboratory conditions. Initially, at 4.1 μg/g, the W content in grass leaves reached 16 μg/g at the highest rate of W supply to the substrate. For radish, the content of W reached 22 and 29 μg/g in the leaves and roots, respectively. The overall W pollution increased significantly the mobility of major elements from substrate to grass leaves, especially at the 5 μg/g pollution level, whereas the W impact on radish leaves resulted in an increase of most contents, only Mn remaining unaffected. The roots from polluted radishes were enriched in Si by 21% and Al by 42% at low pollution, and in Si by 15% at high supply, whereas the uptake of the other elements remained unchanged. It looks like the W pollution at the levels chosen does not impact the transfer of the major and trace elements from roots to leaves of Raphanus sativus. Alternatively, metallic trace elements (Ba, Ni, Cr, Zn, W, Co) of the Raphanus sativus and Chloris gayana leaves outline similar content changes depending on the amount of W pollution. The total rare-earth element contents of the leaves of Raphanus sativus grown in the polluted substrates are lower than those of the leaves from unpolluted substrate. Their normalization in the leaves and roots of Raphanus sativus from the polluted substrates to those of the radish from non-polluted substrate provides flat patterns for both with a positive Eu anomaly for leaves, as for those of the grass and a negative Gd anomaly for roots. Also, addition of soluble W to the substrates induced an increase in the bacterial activity of the soil.     

Influence of Anaerobic Digestion with Pretreatment on the Phytotoxicity of Sewage Sludge

The aim of this study is to evaluate the influence of anaerobic digestion with pretreatment on the phytotoxicity of sewage sludge. The phytotoxicity was evaluated on sewage sludge (SS) and biosolids that came from conventional anaerobic digestion (CAD) and anaerobic digestion with a pretreatment by sequential ultrasound and low-thermal hydrolysis, called advance anaerobic digestion (AAD). To compare the phytotoxicity, eight elutriate concentrations (0.5–100% v/v) from SS, CAD, and AAD were studied on three testing plants: Lactuca sativa, Raphanus sativus, and Triticum aestivum. The percentages of seed germination inhibition, root elongation, and germination index (GI) were evaluated. GI is an phytotoxicity indicator that combines seed germination and root growth, therefore reflecting a more complete estimation of toxicity. Phytotoxicity assays showed that SS, CAD, and AAD elutriates have a beneficial effect on R. sativus. Similar results were observed for T. aestivum for CAD and AAD, with GI values up to 80% in both biosolids. Only for SS, moderate toxicity was observed in T. aestivum. Moreover, L. sativa showed GI values below 50% for SS and CAD, which reflected high toxicity. Only for AAD, no presence of phytotoxic substances was observed in L. sativa. This study concluded that biosolids from AAD improved the plants’ development with a GI above 78% with respect to biosolids from SS and CAD and reduced the phytotoxicity of sewage biosolid.     

Effect of red clover on the microbial transformation of phenanthrene and octadecane in the soil

The influence of red clover (Trifolium pratense L.) plants on the decomposition of phenanthrene and octadecane in the soil has been studied. Effect of plant root mass on the abundance of hydrocarbondegrading bacteria, the composition of their communities, and the degradation of hydrocarbons in the soil has been revealed. Changes in the taxonomic composition of hydrocarbon-degrading bacteria under the effect of red clover are characterized by an increase in the abundance of species from the genera Acinetobacter, Kaistia, Novosphingobium, Pseudomonas, and Xanthomonas. A positive effect of the studied microbial–plant association on the degradation of octadecane and especially phenanthrene in the soil has been revealed.     

Effect of humic acids on the metabolism of <Emphasis Type="Italic">Chlorella vulgaris</Emphasis> in a model experiment

The effect of humic acids (HAs) on physiological processes (photosynthesis, respiration, and abundance) of green microalga Chlorella vulgaris has been studied, and the relationships between the physiological activity of HAs and their structural parameters have been investigated. It has been found that the optimum range of HA concentrations for the growth of C. vulgaris is 0.01–0.03%. In this range, the highest positive effect on total photosynthesis increment is due to hydrophilic HA preparations from fallow soddypodzolic soil (Albic Retisol) and virgin gray soil (Luvic Greyzemic Phaeozem). The minimum stimulation of respiration is noted for all HA preparations in the region of the maximum photosynthesis stimulation. At concentrations above 0.003%, all HA preparations have a negative effect: the rate of photosynthesis in C. vulgaris cells decreases, and their respiration is strongly enhanced. The abundance of C. vulgaris under the effect of all of the studied preparations under illumination increases more rapidly than in the dark. A high positive coefficient of correlation is found between the hydrophilicity of HAs calculated from ¹³C NMR data and the photosynthesis rate in C. vulgaris.     

Ecological and morphological characterisation of two rare and endemic wild edible <Emphasis Type="Italic">Cucumis</Emphasis> species (Cucurbitaceae) of Western Ghats of India

Cucumis silentvalleyi (Manilal, T. Sabu et P.J. Mathew) Ghebretinsae et Thulin and Cucumis indicus Ghebretinsae et Thulin are two rare narrow endemics of Western Ghats of India. Both have morphological resemblance but distinguishable by a few key characters like shape of the leaf, ovary and fruit, and chromosome number. While both are edible and non-bitter, their distribution is mutually exclusive, but overlapping with Cucumis sativus var. hardwickii (Royle) Alef. (the wild and feral form of C. sativus L.). Interspecific crossability studies indicate that both are related to each other and to a lesser extent to Cucumis setosus Cogn. and Cucumis melo L. Being incompletely described, a comparative account of their morphology, phenology, distribution, ecology and conservation are provided.     

Effect of the chemical composition of green manure crops on humus formation in a Soddy-Podzolic soil

The effects of different types of green manure (Trifolium pratense L., Dactylis glomerata L., and Secale cereale L.) and the time of its input into the soil (autumn and spring) on the contents of humus and labile humus substances in a soddy-podzolic soil and the relationship between the formation of humus and the chemical composition of the applied biomass were studied. Green manure had a positive effect on the accumulation of humus in the soil. When the plants were plowed into the soil in the fall, the amount of humus formed in the soil in the first year was 0.1% higher in comparison with the spring application of green manure. The most active synthesis of new humus substances took place upon the following properties of the plant biomass: C: N = 15–25, the cellulose content of 20–28%, and the lignin content of 14–17%. The highest amount of labile humus substances was formed during the decomposition of the biomass with the C: N ratio above 20, the cellulose content of 19–20%, and the lignin content of 14–16%.     

<Emphasis Type="Italic">p</Emphasis>-Coumaric can alter the composition of cucumber rhizosphere microbial communities and induce negative plant-microbial interactions

Phenolics from root exudates or decaying residues are usually referred as autotoxins of several plant species. However, how phenolics affect soil microbial communities and their functional significances are poorly understood. Rhizosphere bacterial and fungal communities from cucumber (Cucumis sativus L.) seedlings treated with p-coumaric acid, an autotoxin of cucumber, were analyzed by high-throughput sequencing of 16S rRNA gene and internal transcribed spacer amplicons. Then, feedback effects of the rhizosphere biota on cucumber seedlings were evaluated by inoculating non-sterilized and sterilized rhizosphere soils to sterilized background soils. p-Coumaric acid decreased the bacterial diversity of rhizosphere but increased fungal diversity and altered the compositions of both the bacterial and fungal communities. p-Coumaric acid increased the relative abundances of microbial taxa with phenol-degrading capability (such as Chaetomium, Humicola, and Mortierella spp.) and microbial taxa which contained plant pathogens (such as Fusarium spp.). However, p-coumaric acid inhibited the relative abundances of Lysobacter, Haliangium, and Gymnoascus spp., whose species can have pathogen-antagonistic and/or plant-growth-promoting effects. The positive effect of cucumber rhizosphere microbiota on cucumber seedling growth was reduced by p-coumaric acid. Overall, our results showed that, besides its direct phytotoxicity, p-coumaric acid can inhibit cucumber seedling growth through generating negative plant-soil microbial interactions.     

Relationships between parameters of the humus status of forest and meadow soils and their altitudinal position on the main Crimean range

The influence of bioclimatic conditions related to the elevation above sea level on the quantitative and qualitative parameters of humus in mountain soils has been studied. It is shown that changes in the water and temperature conditions with the altitude do not exert significant effect on the humus content in mountain- forest soils, because the total amount of soil organic matter mainly depends on the composition and state of the vegetation cover. The humus content is the highest in meadow soils formed on mountain plateau with excessive moistening, which determines the formation of dense grass cover and the temperature regime favorable for humification. The percentage of Cha in the composition of Corg and the optical density of humic acids (HAs) are the qualitative parameters of the soil humus status changing with the altitude. The intensity of humus coloring of the soil depends on the content and optical density of HAs. A comparison of color intensity in the mountainous meadow chernozemlike soils and plain chernozems has shown its significant dependence on the hydrothermic conditions.     

Arbuscular mycorrhizal fungi optimize the acquisition and translocation of Cd and P by cucumber (<Emphasis Type="Italic">Cucumis sativus</Emphasis> L.) plant cultivated on a Cd-contaminated soil

Purpose

Fruiting vegetables are generally considered to be safer than other vegetables for planting on cadmium (Cd)-contaminated farms. However, the risk of transferring Cd that has accumulated in the stems and leaves of fruiting vegetables is a major issue encountered with the usage of such non-edible parts. The objective of this study was to resolve the contribution of arbuscular mycorrhizal (AM) fungi to the production of low-Cd fruiting vegetables (focusing on the non-edible parts) on Cd-contaminated fields.

Materials and methods

An 8-week pot experiment was conducted to investigate the acquisition and translocation of Cd by cucumber (Cucumis sativus L.) plants on an unsterilized Cd-contaminated (1.6 mg kg^?1) soil in response to inoculation with the AM fungus, Funneliformis caledonium (Fc) or Glomus versiforme (Gv). Mycorrhizal colonization rates of cucumber roots were assessed. Dry biomass and Cd and phosphorus (P) concentrations in the cucumber shoots and roots were all measured. Soil pH, EC, total Cd, phytoavailable (DTPA-extractable) Cd, available P, and acid phosphatase activity were also tested.

Results and discussion

Both Fc and Gv significantly increased (P?<?0.05) root mycorrhizal colonization rates and P acquisition efficiencies, and thus the total P acquisition and biomass of cucumber plants, whereas only Fc significantly increased (P?<?0.05) soil acid phosphatase activity and the available P concentration. Both Fc and Gv significantly increased (P?<?0.05) root to shoot P translocation factors, inducing significantly higher (P?<?0.05) shoot P concentrations and shoot/root biomass ratios. In contrast, both Fc and Gv significantly decreased (P?<?0.05) root and shoot Cd concentrations, resulting in significantly increased (P?<?0.05) P/Cd concentration ratios, whereas only Gv significantly decreased (P?<?0.05) the root Cd acquisition efficiency and increased (P?<?0.05) the root to shoot Cd translocation factor. Additionally, AM fungi also tended to decrease soil total and phytoavailable Cd concentrations by elevating plant total Cd acquisition and soil pH, respectively.

Conclusions

Inoculation with AM fungi increased the P acquisition and biomass of cucumber plants, but decreased plant Cd concentrations by reducing the root Cd acquisition efficiency, and resulted in a tendency toward decreases in soil phytoavailable and total Cd concentrations via increases in soil pH and total Cd acquisition by cucumber plants, respectively. These results demonstrate the potential application of AM fungi for the production of fruiting vegetables with non-edible parts that contain low Cd levels on Cd-contaminated soils.

     

Algological and Mycological Characterization of Soils under Pine and Birch Forests in the Pasvik Reserve

The structure of algological and mycological complexes in Al–Fe-humus podzols (Albic Podzols) under pine and birch forests of the Pasvik Reserve is characterized. The number of micromycetes is higher in more acid soils of the pine forest, while the species diversity is greater under the birch forest. The genus Penicillium includes the largest number of species. The greatest abundance and occurrence frequency are typical for Penicillium spinulosum, P. glabrum, and Trichoderma viride in pine forest and for Umbelopsis isabellina, Mucor sp., Mortierella alpinа, P. glabrum, Aspergillus ustus, Trichoderma viride, and T. koningii in birch forest. Cyanobacteria–algal cenoses of the investigated soils are predominated by green algae. Soils under birch forest are distinguished by a greater diversity of algal groups due to the presence of diatoms and xanthophytes. Species of frequent occurrence are represented by Pseudococcomyxa simplex and Parietochloris alveolaris in soils of the pine forest and by Tetracystis cf. aplanospora, Halochlorella rubescens, Pseudococcomyxa simplex, Fottea stichococcoides, Klebsormidium flaccidum, Hantzschia amphioxys, Microcoleus vaginatus, and Aphanocapsa sp. in soils under birch forest     

Effectiveness of crop straws,and swine manure in ameliorating acidic red soils: a laboratory study

Purpose

Crop straws and animal manure have the potential to ameliorate acidic soils, but their effectiveness and the mechanisms involved are not fully understood. The aim of this study was to evaluate the effectiveness of two crop (maize and soybean) straws, swine manure, and their application rates on acidity changes in acidic red soils (Ferralic Cambisol) differing in initial pH.

Materials and methods

Two red soils were collected after 21 years of the (1) no fertilization history (CK soil, pH 5.46) and (2) receiving annual chemical nitrogen (N) fertilization (N soil, pH 4.18). The soils were incubated for 105 days at 25 °C after amending the crop straws or manure at 0, 5, 10, 20, and 40 g kg^?1 (w/w), and examined for changes in pH, exchangeable acidity, N mineralization, and speciation in 2 M KCl extract as ammonium (NH₄⁺) and nitrate plus nitrite (NO₃^??+?NO₂^?).

Results and discussion

All three organic materials significantly decreased soil acidity (dominated by aluminum) as the application rate increased. Soybean straw was as effective (sometimes more effective) as swine manure in raising pH in both soils. Soybean straw and swine manure both significantly reduced exchangeable acidity at amendment rate as low as 10 g kg^?1 in the highly acidic N soil, but swine manure was more effective in reducing the total acidity especially exchangeable aluminum (e.g., in the N soil from initial 5.79 to 0.50 cmol₍₊₎ kg^?1 compared to 2.82 and 4.19 cmol₍₊₎ kg^?1 by soybean straw and maize straw, respectively). Maize straw was less effective than soybean straw in affecting soil pH and the acidity. The exchangeable aluminum decreased at a rate of 4.48 cmol₍₊₎ kg^?1 per pH unit increase for both straws compared to 6.25 cmol₍₊₎ kg^?1 per pH unit from the manure. The NO₃^??+?NO₂^? concentration in soil increased significantly for swine manure amendment, but decreased markedly for straw treatments. The high C/N ratio in the straws led to N immobilization and pH increase.

Conclusions

While swine manure continues to be effective for ameliorating soil acidity, crop straw amendment has also shown a good potential to ameliorate the acidity of the red soil. Thus, after harvest, straws should preferably not be removed from the field, but mixed with the soil to decelerate acidification. The long-term effect of straw return on soil acidity management warrants further determination under field conditions.

     

Long-term and legacy effects of manure application on soil microbial community composition

We analyzed soil prokaryotic and fungal community composition in soils with varying histories of cattle manure application. The manure treatments were (i) annual application for 43 years (MF), (ii) annual application for 14 years followed by 29 years without application (MF14), and (iii) annual application for 30 years followed by 13 years without application (MF30). An annual application of chemical nitrogen (N) fertilizer (CNF) and a non-amended control (Con) were also included. Soil prokaryotic evenness and diversity significantly decreased in MF relative to other treatments in fall, but were similar to the other fertilizer treatments in spring and summer. Distinct prokaryotic and fungal community composition was observed in MF compared to other treatments across fall, spring, and summer seasons. The MF treatment significantly increased the relative abundance of Firmicutes, Gammaproteobacteria, and Gemmatimonadetes, but significantly decreased the relative abundance of Acidobacteria. In fall, the soil prokaryotic and fungal community composition with MF30 was significantly different than the other fertilization treatments. Overall, the study showed that annual manure application (MF) led to a different microbial community composition than the other fertilizer treatments. Soil without manure application for 13 years (MF30) had a significantly different microbial community composition from other fertilizer treatments in fall, while the soil without manure application for 29 years (MF14) resembled a microbial community that had never received manure.     

Effects of vermicompost amendment as a basal fertilizer on soil properties and cucumber yield and quality under continuous cropping conditions in a greenhouse

Purpose

We examined the effects of vermicompost application as a basal fertilizer on the properties of a sandy loam soil used for growing cucumbers under continuous cropping conditions when compared to inorganic or organic fertilizers.

Materials and methods

A commercial cucumber (Cucumis sativus L.) variety was grown on sandy loam soil under four soil amendment conditions: inorganic compound fertilizer (750 kg/ha,), replacement of 150 kg/ha of inorganic compound fertilizer with 3000 kg/ha of organic fertilizer or vermicompost, and untreated control. Experiments were conducted in a greenhouse for 4 years, and continuous planting resulted in seven cucumber crops. The yield and quality of cucumber fruits, basic physical and chemical properties of soil, soil nutrient characteristics, and the soil fungal community structure were measured and evaluated.

Results and discussion

Continuous cucumber cropping decreased soil pH and increased electrical conductivity. However, application of vermicompost significantly improved several soil characteristics and induced a significant change in the rhizosphere soil fungal community compared to the other treatments. Notably, the vermicompost amendments resulted in an increase in the relative abundance of Ascomycota, Chytridiomycota, Sordariomycetes, Eurotiomycetes, and Saccharomycetes, and a decrease in Glomeromycota, Zygomycota, Dothideomycetes, Agaricomycetes, and Incertae sedis. Compared to the organic fertilizer treatment, vermicompost amendment increased the relative abundance of beneficial fungi and decreased those of pathogenic fungi. Cucumber fruit yield decreased yearly under continuous cropping conditions, but both inorganic and organic fertilizer amendments increased yields. Vermicompost amendment maintained higher fruit yield and quality under continuous cropping conditions.

Conclusions

Continuous cropping decreased cucumber yield in a greenhouse, but basic fertilizer amendment reduced this decline. Moreover, basal fertilizer amendment decreased beneficial and pathogenic fungi, and the use of vermicompost amendment in the basic fertilizer had a positive effect on the health of the soil fungal community.

     

Paramagnetic Properties of Humic Substances in Taiga and Tundra Soils of the European Northeast of Russia

The study of paramagnetic activity of humic substances in taiga and tundra soils of the Komi Republic and the assessment of the influence of soil hydromorphism on concentrations of free radicals in the structure of humic acids (HAs) and fulvic acids (FAs) have been performed. The concentration of free radicals in HA specimens was up to 11 times higher than that in FA specimens due to a higher content of aromatic and other condensed structures in HA molecules. This fact attests to the high capacity of HAs to polymerization and complexation reactions with participation of radicals. The average value of g-factor is higher for FA specimens than for HA specimens, which attests to a greater electron density shift of unpaired electron to oxygen atom in the structure of FAs because of its spin-orbital interaction with oxygen-containing functional groups, the concentrations of which are significantly higher in FAs than in HAs. An increase in the concentration of free radicals in the molecular structure of HAs is observed in taiga soils with an increase in the degree of their hydromorphism (from automorphic to semihydromorphic soils), which is related to the biohydrothermal conditions of humus formation in bog-podzolic soils with retarded biochemical processes and low degree of plant litter humification. As a result, HAs with the high content of free radicals in their structure are formed. An opposite situation is observed for HAs in tundra soils with a decrease in the content of unpaired electrons under conditions of the increased hydromorphism. The difference in the character of changes in the paramagnetic activity of HAs in taiga and tundra soils with different degrees of hydromorphism may be related to different natures of plant residues participating in humification processes. A tendency for a decrease in the paramagnetic activity in both HAs and FAs from the south to the north is observed, which may be related to a general decrease in the content of poly-conjugated systems in the structure of humic substances in tundra soils.     

Abundance of transcripts of functional gene reflects the inverse relationship between CH<Subscript>4</Subscript> and N<Subscript>2</Subscript>O emissions during mid-season drainage in acidic paddy soil

Agricultural management significantly affects methane (CH₄) and nitrous oxide (N₂O) emissions from paddy fields. However, little is known about the underlying microbiological mechanism. Field experiment was conducted to investigate the effect of the water regime and straw incorporation on CH₄ and N₂O emissions and soil properties. Quantitative PCR was applied to measure the abundance of soil methanogens, methane-oxidising bacteria, nitrifiers, and denitrifiers according to DNA and mRNA expression levels of microbial genes, including mcrA, pmoA, amoA, and nirK/nirS/nosZ. Field trials showed that the CH₄ and N₂O flux rates were negatively correlated with each other, and N₂O emissions were far lower than CH₄ emissions. Drainage and straw incorporation affected functional gene abundance through altered soil environment. The present (DNA-level) gene abundances of amoA, nosZ, and mcrA were higher with straw incorporation than those without straw incorporation, and they were positively correlated with high concentrations of soil exchangeable NH₄⁺ and dissolved organic carbon. The active (mRNA-level) gene abundance of mcrA was lower in the drainage treatment than in continuous flooding, which was negatively correlated with soil redox potential (Eh). The CH₄ flux rate was significantly and positively correlated with active mcrA abundance but negatively correlated with Eh. The N₂O flux rate was significantly and positively correlated with present and active nirS abundance and positively correlated with soil Eh. Thus, we demonstrated that active gene abundance, such as of mcrA for CH₄ and nirS for N₂O, reflects the contradictory relationship between CH₄ and N₂O emissions regulated by soil Eh in acidic paddy soils.     

Effects of biochar on Cd and Pb mobility and microbial community composition in a calcareous soil planted with tobacco

An experiment was conducted with tobacco (Nicotiana tabacum L.) grown in a Cd- and Pb-contaminated calcareous soil amended with 0.0, 1.0, 2.5, and 5.0% (w/w) tobacco stalk biochar (BC). The BC amendment significantly increased organic matter, total C, N, P, and K contents of soil, and the C/N ratio. Bioavailable metal concentrations (DTPA extraction) decreased by increasing BC application rate. The 5.0% BC amendment significantly decreased the DTPA-extractable Cd and Pb by 10.4 and 13.6%, respectively. Correspondingly, the bioaccumulation and translocation factors of Cd and Pb also decreased by increasing the BC addition rates and this indicated that BC inhibited the uptake and transfer of both Cd and Pb by tobacco plants. Moreover, high-throughput sequencing revealed that BC increased Chao1 richness, Shannon’s diversity and Simpson’s diversity of bacterial communities of soil. The relative abundance and genera composition of Adhaeribacter, Rhodoplanes, Pseudoxanthomonas, and Candidatus Xiphinematobacter increased under BC treatments, while those of Kaistobacter, Lacibacter, and Pirellula decreased. Overall, BC increased soil nutrients (C, N, P, and K contents), enhanced bacterial diversity indexes and richness, and changed the bacterial community composition, which may all have contributed to reduce the mobility and bioavailability of both Cd and Pb in a calcareous soil.     

Evaluation of genetic resources in the genus <Emphasis Type="Italic">Asparagus</Emphasis> for resistance to <Emphasis Type="Italic">Asparagus virus 1</Emphasis> (AV-1)

Forty-four Asparagus officinalis cultivars, gene bank accessions and breeding lines as well as thirty-four accessions of wild relatives of Asparagus were evaluated for resistance to Asparagus virus 1. Three different test strategies were developed for the assessment of individual plants: (1) natural infection under field conditions, or two vector-mediated infection assays using the green peach aphid Myzus persicae (2) in an insect-proof gauze cage or (3) in a climate chamber. The AV-1 infections were verified by DAS-ELISA and RT-PCR approaches. All tested 660 individual plants of A. officinalis germplasm were susceptible to AV-1 infection. In contrast, in 276 plants of 29 Asparagus wild accessions no virus infection could be detected. These resistant accessions comprised of nineteen diploid, tetraploid and hexaploid species of both the Eurasian clade and the African clade of the asparagus germplasm. Data of the AV-1 resistance evaluation are discussed in relation to the genetic distance of the resistance carrier and potential application in breeding.     

A review of genetic resources of almonds and stone fruits (<Emphasis Type="Italic">Prunus</Emphasis> spp.) in Iran

Iran is amongst the countries in the world widely known for cultivation of Prunus spp. (or stone fruits). It is both a centre of origin and diversity of the stone fruits. Numerous wild species as well as many cultivars and landraces of these fruit crops are important genetic resources today in Iran and can be used for improvement and breeding of scion and rootstock cultivars which are resistant to many biotic and abiotic stresses through modern genomics and genetic technologies. This paper discusses the distribution, ethno-botany, diversity and utilization of wild and domesticated genetic resources of stone fruits including almond (Prunus dulcis (Miller) D. A. Webb.), peach and nectarine (P. persica Batsch), European and Japanese plum (P. × domestica L., and P. salicina L., respectively), sweet and sour cherry (P. avium L., and P. cerasus L., respectively), and apricot (P. armeniaca L.), all of which are members of the Rosaceae family. The goal of this paper is to highlight the importance of Iran as a main contributor to the diversity of Prunus genetic resources in the world, as well as, present major achievements regarding identification, collection, evaluation, conservation and utilization of this valuable genetic resource in Iran.     

Polymorphism of <Emphasis Type="Italic">Got2</Emphasis> DNA sequences sheds light on <Emphasis Type="Italic">Aegilops tauschii</Emphasis> Coss. intraspecies divergence and origin of <Emphasis Type="Italic">Triticum aestivum</Emphasis> L.

DNA sequences of nuclear gene Got2 was studied in 60 accessions of Aegilops tauschii, 29 of subsp. tauschii and 31 of subsp. strangulata. It was found that Got2 allozyme polymorphism in Ae. tauschii is due to a single, unique, mutation which led to replacement of glutamic acid by isoleucine in residue 256 of the enzyme molecule, encoded by Got2. As revealed by Got2 DNA sequences variation, initially in its history Ae. tauschii was presented by subsp. strangulata, and among phylogenetic lineages of subsp. strangulata, the lineage “t-9¹s” (TauL3) is the most ancient, a relict one. Subspecies tauschii is relatively “young”. Initially it was presented by the lineage marked by combination of allozyme alleles Got2 ¹⁰⁵ and Acph1 ¹⁰⁰. In the past it inhabited the Continental area from Caucasia to Pakistan, but later on it was forced out by newly originated, now—a major lineage of subsp. tauschii, marked by Got2 ¹⁰⁰. This lineage extended the Continental area of the species up to Kirgizstan, but actually failed to penetrate into pre-Caspian area, occupied by subsp. strangulata. These results essentially differ from those obtained previously, using chloroplast DNA (cpDNA) sequences polymorphism. As revealed by cpDNA, the major, “usual”, subsp. strangulata (TauL2) is “younger” than subsp. tauschii, which resided on phylogenetic tree between relict lineage “t-9¹s”of subsp. strangulata—and major subsp. strangulata. But both cpDNA and Got2 DNA sequences indicate that the level of genetic variation in subsp. tauschii is much lower than in subsp. strangulata. According to Got2 DNA sequences variation, it was Ae. tauschii subsp. strangulata lineage “k-109″ which donated genome D to Triticum aestivum L. This lineage includes accessions: k-109 from South-Eastern Precaspian Azerbaijan; KU-2105, KU-2159 from Western Precaspian Iran; KU-2080 from Eastern Precaspian Iran.