Assessing population maturity of three perennial grass species: Influence of phenology and tiller demography along latitudinal and altitudinal gradients

To assess the whole‐sward maturity, which is a primary concern for grassland managers, we studied three forage grass species with contrasting phenology over a range of climatic conditions among sites. We considered two main issues: (i) How is grass population maturity related to population phenology, and is this relation affected by environmental factors? and (ii) Is the sum of temperatures a good index to describe phenological development under contrasting climates? To explore the role of temperature accumulation in species population development, we described the phenological development of populations of three grass species along latitudinal and altitudinal gradients at eight locations across France. We used a numerical index of tiller development to quantify sward morphological structure and discriminate phenological peak from average maturity. We report that phenological development rates were similar among sites for each species, but required fewer growing degree days to start at higher latitudes and altitudes. However, we found that population maturity and phenological peak differed significantly due to among‐site variability in vegetative tiller percentage in whole‐population biomass. Our results underlined the importance of considering tiller distribution among phenological stages, especially tiller development synchrony, together with phenology to assess sward maturity in semi‐natural permanent grasslands.     

Seed protein variation within accessions of wild and cultivated potato species and inbredSolanum chacoense

Summary Soluble proteins in seed potato were analyzed by electrophoresis (PAGE). The Index of Variation (IV) was calculated in order to estimate variation within each accession of wild and cultivated potato species andS. chacoense selfed lines. Seeds of 34 accessions representing 14 species from six taxonomic series were analyzed. The IV ofS. chacoense selfed lines decreased from 47.7 in the S₂ to 12.9 in the S₇ generation. The average IV for the self-incompatible diploid species was 41.2, whereas that of the selfcompatible diploid species,S. polyadenium, was 21.3. TetraploidS. tuberosum ssp.andigena andS. sucrense had an average IV of 62.2, which is much higher than that observed in any other diploid species. The naturally selfing speciesS. acaule (4x), and its colchicine-doubled derivative (8x), showed very low variation (IV=7.5). The IV appears to reflect heterozygosity and is affected by the breeding mode and the genetic constitution of diploid parents for derived polyploids.     

Herbage mass and nutritive value of herbage of extensively managed temperate grasslands along a gradient of shrub encroachment

Semi-natural grasslands often serve as important reserves of biodiversity. In Europe extensive grazing by livestock is considered an appropriate management to conserve biodiversity value and to limit shrub encroachment. However, little is known about the influence of shrubs on agronomic values. A gradient analysis of shrub-invaded temperate grasslands (from shrub-free to pioneer forest) in Germany was carried out to test the hypothesis that herbage mass and variables describing nutritive value of herbage decrease with increasing shrub encroachment. The herbage mass of dry matter (DM), variables describing the nutritive value of herbage, composition of the vegetation and mean of Ellenberg's indicator values were analysed with respect to the extent of shrubs. There was a reduction of herbage mass of DM from 3570 to 210 kg ha⁻¹ with increasing shrub encroachment. Metabolizable energy concentration of herbage ranged from 8·9 to 10·2 MJ kg⁻¹ DM and crude protein concentration from 72 to 171 g kg⁻¹ DM, both measures being positively correlated with shrub occurrence. Increasing shrub occurrence was associated with a decrease in water-soluble carbohydrates concentration (from 151 to 31 g kg⁻¹) and a reduction in the indicator 'forage value'. The results indicate a potentially large agronomic value for shrub-encroached temperate grasslands.     

Identification of a major quantitative trait locus and its candidate underlying genetic variation for rice stigma exsertion rate

Stigma exsertion in male sterile lines of hybrid rice is important for seed yield.In the present study, ZS616 [Oryza sativa subsp.Xian(indica)], a male sterile line with a stigma exsertion rate(SER) as high as 94.5%, was crossed to DS552, a japonica line with almost no exserted stigmas.F3 plants with extremely low and high SER were sequenced to identify SER-associated quantitative trait loci(QTL).A major QTL for SER, qSER-3.1, was identified along with other QTL on chromosome 3 in a 3.9 Mb region.A total of 307 nonsynonymous single-nucleotide polymorphisms(SNPs) and 27 frame-shift insertion/deletions(InDels)differentiating ZS616 and DS552 were identified in the region containing qSER-3.1.Most SNPs(294) and InDels(25) were excluded after further analysis because they were shared by ZS616 and low(<2.0%) SER accessions in the Huazhong Agricultural University(HAU) core rice collection.Association analysis using the full HAU collection identified a 17-bp InDel in OS03 G0689400 as the most likely causal genetic variant underlying qSER-3.1.ZS616-type accessions(n = 54, with the 17-bp insertion) in the HAU collection had minimum(16.5%)and mean(39.6%) SERs significantly greater than those(n = 424) without the insertion(with minimum and mean SERs of 0.2% and 20.6%, respectively).Thus, this study identified a major QTL for stigma exsertion and revealed the mutation in a candidate gene for the QTL.     

Growth, photosynthesis and root reserpine concentrations of two Rauvolfia species in response to a light gradient

Growth and secondary metabolites responses to light environment can be useful measurements to determine favourable habitat conditions for the cultivation and conservation of medicinal plants. We analyzed the growth, photosynthesis and root reserpine concentrations in seedlings of Rauvolfia vomitoria Afzel and Rauvolfia verticillatae (Lour.) Baill, two important medicinal plants yielding anti-hypertension alkaloids, at four different light levels (20%, 52%, 75% and 100% of full sunlight) in a shade house. Across all light intensities, seedlings of R. vomitoria grew faster with higher relative growth rate (RGR) than R. verticillatae, attributed to its higher photosynthetic capacities (light-saturated photosynthetic rate, A_max) and leaf area ratio (LAR). Typical shade-sun morphological responses to increasing light levels included decreased specific leaf area and LAR, whereas RGR and A_max was highest at median light levels for both species. R. vomitoria allocated higher leaf mass fraction and fine-root mass fraction, similar coarse root mass fraction, but lower stem biomass fraction than R. verticillatae. For fine roots, R. vomitoria had greater specific root length and small diameter than R. verticillatae, indicating its higher resource (water and nutrition) capture abilities. Both species had higher nitrogen concentration and lower reserpine concentration in fine roots than those of coarse roots. Neither reserpine concentration nor nitrogen was affected by light intensities. The reserpine concentration in coarse roots of R. vomitoria increased, whereas that of R. verticillatae decreased with increasing irradiance. Although not significantly, reserpine concentrations in coarse roots were positively correlated with A_max and RGR for both species across all light intensities. Shade or photosynthesis inhibition apparently did not increase alkaloid synthesis, which contrasted with the carbon/nutrient balance theory of plant defense. These results suggested that R. vomitoria and R. verticillatae could attain high biomass and yield of reserpine in high-light habitats (with max. in 75% sunlight), and intermediate-light habitats (with max. in 25–52% sunlight), respectively.     

Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders,three new families,eight new genera and one hundred and seven new species

Nearly 500 basidiomycetous yeast species were accepted in the latest edition of The Yeasts: A Taxonomic Study published in 2011. However, this number presents only the tip of the iceberg of yeast species diversity in nature. Possibly more than 99 % of yeast species, as is true for many groups of fungi, are yet unknown and await discovery. Over the past two decades nearly 200 unidentified isolates were obtained during a series of environmental surveys of yeasts in phyllosphere and soils, mainly from China. Among these isolates, 107 new species were identified based on the phylogenetic analyses of nuclear ribosomal DNA (rDNA) [D1/D2 domains of the large subunit (LSU), the small subunit (SSU), and the internal transcribed spacer region including the 5.8S rDNA (ITS)] and protein-coding genes [both subunits of DNA polymerase II (RPB1 and RPB2), the translation elongation factor 1-α (TEF1) and the mitochondrial gene cytochrome b (CYTB)], and physiological comparisons. Forty-six of these belong to 16 genera in the Tremellomycetes (Agaricomycotina). The other 61 are distributed in 26 genera in the Pucciniomycotina. Here we circumscribe eight new genera, three new families and two new orders based on the multi-locus phylogenetic analyses combined with the clustering optimisation analysis and the predicted similarity thresholds for yeasts and filamentous fungal delimitation at genus and higher ranks. Additionally, as a result of these analyses, three new combinations are proposed and 66 taxa are validated.     

Hide and seek – Infection rates and alkaloid concentrations of Epichloë festucae var. lolii in Lolium perenne along a land‐use gradient in Germany

The common forage grass Lolium perenne has evolved with the systemic fungal endophyte Epichloë festucae var. lolii. The endophyte provides herbivore resistance to the grass due to defensive alkaloids, some of which are toxic to grazing livestock. In this field study, we determine whether distribution of the endophyte‐grass association changes along a land‐use intensity gradient on 87 managed grasslands in three German regions. Endophyte infections were detected in 66% of the studied sites and infection rates within infected sites ranged from 1% to 95%. Alkaloid concentrations of lolitrem B (vertebrate toxin) exceeded the toxicity thresholds in 50 (14%) of 351 infected plants and of peramine (invertebrate deterrent/toxin) in 12 (3%) of 351 plants. Infection rates and alkaloid concentrations were not significantly affected by land‐use intensity and region, but alkaloid concentrations were higher in summer compared to spring. We conclude that risks for livestock intoxication are currently low, as (i) average alkaloid concentrations per grassland were always below toxicity thresholds and as (ii) none of the grasslands was dominated by L. perenne. We suggest avoidance of grass monocultures in Europe to keep intoxication risks for livestock low; we also recommend regular examination of seeds and grasslands, as seed producers might accidentally distribute infected seeds, and as climate warming might further enhance the distribution of Epichloë endophytes in European grasslands.     

Sowing date,transplanting, plant density and nitrogen fertilization affect indigo production from Isatis species in a Mediterranean region of Spain

The increasing interest in natural products from a renewable source has encouraged growers to reintroduce indigo-producing crops into the European agriculture. We studied agronomic conditions (sowing date, plant density, nitrogen fertilization, irrigation rate, seedling transplanting) influencing production of the blue pigment indigo, from Isatis tinctoria and I. indigotica crops in a Mediterranean region of Spain (Valencia). I. tinctoria was more suitable for cultivation in our climate conditions than I. indigotica. Indigo yield from Spanish I. tinctoria trials was greater than in Northern and Central Europe. Furthermore, indigo production was maintained when water and nitrogen supplies were significantly restricted, showing that I. tinctoria is not a high-demanding crop.     

Identification and molecular characterization of novel LMW-m and -s glutenin genes,and a chimeric -m/-i glutenin gene in 1A chromosome of three diploid Triticum species

Low molecular weight glutenin subunits (LMWGs) are part of the gluten network that gives dough its viscoelastic properties. A-genome-containing diploid species related to modern polyploid wheat show great variability in these subunits. The current study characterized the variability of LMW-m and -s genes, being identified fifteen LMWGs genes in the three species evaluated, of which 14 were novel. Ten were pseudogenes, which are common in cereal prolamins. The rest of genes, with intact coding region, corresponded to the LMW-m genes and some single nucleotide polymorphisms and insertion/deletion events were detected, which could alter protein structure and affect dough quality. Two variants of the LMW-s genes were detected in cultivated einkorn and Triticum urartu, the former being novel. The LMW-m and -s genes were related to TuA3-391 and TuA3-400 genes, and to the Tu-460 gene, respectively, of T. urartu. Screening the sequences characterized for reactive epitopes of celiac disease revealed that LMW-m could be less toxic than other subunits for celiac patients. One novel chimeric gene with features from LMW-m and LMW-i genes was detected in T. urartu, and it produces a novel mature protein that may have a distinguishing effect on dough quality. Novel insights into the evolution of LMWGs genes are also reported. These species are a potential source of novel LMWGs variants.