The influence of soil properties on the structure of bacterial and fungal communities across land-use types

Land-use change can have significant impacts on soil conditions and microbial communities are likely to respond to these changes. However, such responses are poorly characterized as few studies have examined how specific changes in edaphic characteristics do, or do not, influence the composition of soil bacterial and fungal communities across land-use types. Soil samples were collected from four replicated (n = 3) land-use types (hardwood and pine forests, cultivated and livestock pasture lands) in the southeastern US to assess the effects of land-use change on microbial community structure and distribution. We used quantitative PCR to estimate bacterial–fungal ratios and clone libraries targeting small-subunit rRNA genes to independently characterize the bacterial and fungal communities. Although some soil properties (soil texture and nutrient status) did significantly differ across land-use types, other edaphic factors (e.g., pH) did not vary consistently with land-use. Bacterial–fungal ratios were not significantly different across the land-uses and distinct land-use types did not necessarily harbor distinct soil fungal or bacterial communities. Rather, the composition of bacterial and fungal communities was most strongly correlated with specific soil properties. Soil pH was the best predictor of bacterial community composition across this landscape while fungal community composition was most closely associated with changes in soil nutrient status. Together these results suggest that specific changes in edaphic properties, not necessarily land-use type itself, may best predict shifts in microbial community composition across a given landscape. In addition, our results demonstrate the utility of using sequence-based approaches to concurrently analyze bacterial and fungal communities as such analyses provide detailed phylogenetic information on individual communities and permit the robust assessment of the biogeographical patterns exhibited by soil microbial communities.     

Experimental warming effects on the microbial community of a temperate mountain forest soil

Soil microbial communities mediate the decomposition of soil organic matter (SOM). The amount of carbon (C) that is respired leaves the soil as CO₂ (soil respiration) and causes one of the greatest fluxes in the global carbon cycle. How soil microbial communities will respond to global warming, however, is not well understood. To elucidate the effect of warming on the microbial community we analyzed soil from the soil warming experiment Achenkirch, Austria. Soil of a mature spruce forest was warmed by 4 °C during snow-free seasons since 2004. Repeated soil sampling from control and warmed plots took place from 2008 until 2010. We monitored microbial biomass C and nitrogen (N). Microbial community composition was assessed by phospholipid fatty acid analysis (PLFA) and by quantitative real time polymerase chain reaction (qPCR) of ribosomal RNA genes. Microbial metabolic activity was estimated by soil respiration to biomass ratios and RNA to DNA ratios. Soil warming did not affect microbial biomass, nor did warming affect the abundances of most microbial groups. Warming significantly enhanced microbial metabolic activity in terms of soil respiration per amount of microbial biomass C. Microbial stress biomarkers were elevated in warmed plots. In summary, the 4 °C increase in soil temperature during the snow-free season had no influence on microbial community composition and biomass but strongly increased microbial metabolic activity and hence reduced carbon use efficiency.     

Long-term manuring and fertilization effects on soil organic carbon pools in a Typic Haplustept of semi-arid sub-tropical India

Soil is a potential C sink and could offset rising atmospheric CO₂. The capacity of soils to store and sequester C will depend on the rate of C inputs from plant productivity relative to C exports controlled by microbial decomposition. Management practices, such as no-tillage and high intensity cropping sequences, have the potential to enhance C and N sequestration in agricultural soils. An investigation was carried out to study the influence of long-term applications of fertilizers and manures on different organic C fractions in a Typic Haplustept under intensive sequence of cropping with maize–wheat–cowpea in a semi-arid sub-tropic of India. In 0–15 cm, the bulk density was lowest (1.52 Mg m⁻³) in plots treated with 100% NPK + FYM, while the control treatment showed the highest value (1.67 Mg m⁻³). Balanced application of NPK (100% NPK) showed significantly lower bulk density (1.56 Mg m⁻³) over either 100% N (1.67 Mg m⁻³) or 100% NP (1.61 Mg m⁻³) in surface soils. The application of super-optimal dose of NPK (150% NPK) showed higher total organic C (TOC) (12.9 g C kg⁻¹) over either 50% NPK (9.3 g C kg⁻¹) or 100% NPK (10.0 g C kg⁻¹) in 0–15 cm soil layer. There was an improvement in TOC in 100% NPK or 100% NP (9.3 g C kg⁻¹) over 100% N (8.7 g C kg⁻¹) in the same depth. The application of FYM with 100% NPK showed 15.2, 9.9 and 5.2 g C kg⁻¹ in 0–15, 15–30 and 30–45 cm, respectively. Application of graded doses of NPK from 50 to 150% of recommendation NPK significantly enhanced other organic C fractions like, microbial biomass C (MBC), particulate organic C (POC) and KMnO₄ oxidizable C (KMnO₄–C) in all the three soil depths. The TOC in 0–45 cm soil depth in 150% NPK (63.5 Mg C ha⁻¹) was increased by 39% over that in 50% NPK treatment (51.5 Mg C ha⁻¹) and 29% over that in 100% NPK treatment (54.1 Mg C ha⁻¹). Integrated use of farmyard manure with 100% NPK (100% NPK + FYM) emerged as the most efficient management system in accumulating largest amount of organic C (72.1 Mg C ha⁻¹) in soil. Nevertheless, this treatment also sequestered highest amount of organic C (731 kg C ha⁻¹ year⁻¹). Particulate organic carbon, a physically protected carbon pool in soil, could well be protected in sub-surface soil layers than in surface soil layer as a means of carbon aggradations. Microbial metabolic quotient (qCO₂) was significantly lower in 100% NPK + FYM over other treatments to indicate this to be the most efficient manuring practice to preserve organic carbon in soil where it facilitates aggradations of more recalcitrant organic C in soil. As compared to POC, total TOC proved to be a better predictor of MBC as it strongly correlated with total carbon mineralized from soil.     

Surveying soil faunal communities using a direct molecular approach

Soil faunal communities are often phylogenetically diverse and the accurate assessment of the taxonomic structure of these communities is both time-consuming and requires a high level of taxonomic expertise. Here we describe a DNA sequence-based methodology for characterizing soil micro- and mesofaunal communities that is similar to the molecular approaches commonly used to survey soil microbial diversity. The technique involves the direct extraction of faunal DNA from soil, PCR amplification of the extracted DNA with metazoan-specific primers, followed by the construction of clone libraries and direct sequencing of individual PCR products. We used this technique to characterize micro- and mesofaunal community composition from six individual soils representing two land-use types. The technique captured the more abundant faunal groups in the soils (nematodes, Collembola, Acari, tardigrades, enchytraeids) and provided sufficient taxonomic resolution to describe the overall structure of the communities. We compared the results obtained using this molecular approach to results obtained using a traditional, microscopy-based approach and found that the results were broadly similar. However, since biases are inherent in both methods it remains unclear which method provides a more accurate assessment of soil faunal community composition. Although this molecular approach has some distinct disadvantages over the more widely-used direct extraction methods, one advantage is that the taxonomic identification it can provide will be more accurate and consistent across research groups, facilitating effective comparisons of mesofaunal surveys.     

Conservation tillage: Short- and long-term effects on soil carbon fractions and enzymatic activities under Mediterranean conditions

Short- and long-term field experiments are necessary to provide important information about how soil carbon sequestration is affected by soil tillage system; such systems can also be useful for developing sustainable crop production systems. In this study, we evaluated the short- and long-term effects of conservation tillage (CT) on soil organic carbon fractions and biological properties in a sandy clay loam soil. Both trials consisted of rainfed crop rotation systems (cereal–sunflower–legumes) located in semi-arid SW Spain. In both trials, results were compared to those obtained using traditional tillage (TT). Soil samples were taken in flowering and after harvesting of a pea crop and collected at three depths (0–5, 5–10 and 10–20 cm). The soil organic carbon fractions were measured by the determination of total organic carbon (TOC), active carbon (AC) and water soluble carbon (WSC). Biological status was evaluated by the measurement of soil microbial biomass carbon (MBC) and enzymatic activities [dehydrogenase activity (DHA), o-diphenol oxidase activity (DphOx), and β-glucosidase activity (β-glu)].The contents of AC and MBC in the long-term trial and contents of AC in the short-term trial were higher for CT than TT at 0–5 cm depth for both sampling periods. Furthermore, DHA and β-glucosidase values in the July sampling were higher in the topsoil under conservation management in both trials (short- and long-term). The parameters studied tended to decrease as depth increased for both tillage system (TT and CT) and in both trials with the exception of the DphOx values, which tended to be higher at deeper layers.Values of DHA and β-glu presented high correlation coefficients (r from 0.338 to 0.751, p ≤ 0.01) with AC, WSC and TOC values in the long-term trial. However, there was no correlation between either TOC or MBC and the other parameters in the short-term trial. In general, only stratification ratios of AC were higher in CT than in TT in both trials. The results of this study showed that AC content was the most sensitive and reliable indicator for assessing the impact of different soil management on soil quality in the two experiments (short- and long-term).Conservation management in dryland farming systems improved the quality of soil under our conditions, especially at the surface layers, by enhancing its storage of organic matter and its biological properties, mainly to long-term.     

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by geographic features

Here, we examine soil-borne microbial biogeography as a function of the features that define an American Viticultural Area (AVA), a geographically delimited American wine grape-growing region, defined for its distinguishing features of climate, geology, soils, physical features (topography and water), and elevation. In doing so, we lay a foundation upon which to link the terroir of wine back to the soil-borne microbial communities. The objective of this study is to elucidate the hierarchy of drivers of soil bacterial community structure in wine grape vineyards in Napa Valley, California. We measured differences in the soil bacterial and archaeal community composition and diversity by sequencing the fourth variable region of the small subunit ribosomal RNA gene (16S V4 rDNA). Soil bacterial communities were structured with respect to soil properties and AVA, demonstrating the complexity of soil microbial biogeography at the landscape scale and within the single land-use type. Location and edaphic variables that distinguish AVAs were the strongest explanatory factors for soil microbial community structure. Notably, the relationship with TC and TN of the <53 μm and 53–250 μm soil fractions offers support for the role of bacterial community structure rather than individual taxa on fine soil organic matter content. We reason that AVA, climate, and topography each affect soil microbial communities through their suite of impacts on soil properties. The identification of distinctive soil microbial communities associated with a given AVA lends support to the idea that soil microbial communities form a key in linking wine terroir back to the biotic components of the soil environment, suggesting that the relationship between soil microbial communities and wine terroir should be examined further.     

长期施肥对红壤性水稻土微生物生物量与活性的影响

土壤微生物及其活性是指示土壤增肥过程和土壤环境变化的灵敏指标.本文研究了红壤荒地开垦为水田后不同施肥制度定位施肥 16 年后水稻土的微生物生物量与活性特征,结果表明:经 16 年水稻耕植,不同施肥措施下土壤的微生物生物量和活性还处于较低水平.施肥制度显著影响了水稻土的微生物生物量 C 和基质诱导呼吸,但对基础呼吸的影响还不明显.只施用 N、K 肥对提高土壤微生物生物量和活性没有显著效果,在不施肥或施用化肥的基础上配合有机循环可以显著提高土壤微生物的生物量、代谢活性和微生物呼吸的温度敏感性,N、P、K 肥配合有机循环的施肥制度对提高土壤微生物生物量和代谢活性的作用最好.     

Soil carbon pool and effects of soil fertility in seeded alfalfa fields on the semi-arid Loess Plateau in China

The dynamics of the soil organic carbon pool and soil fertility were studied in soils with different number of growing years of alfalfa (Medicago sativa L.) in the semiarid Loess Plateau of China. The soil water content and soil water potential decreased and the depth of desiccated layers grew with the number of growing years of alfalfa. The soil organic C (SOC) cannot be enhanced on short timescales in these unfertilized and mowed-alfalfa grasslands in the topsoil, but the light fraction of organic C (LFOC), soil microbial biomass C (MBC) and microbial biomass N (MBN) all increased with the number of growing years. When alfalfa had been growing for more than 13 yr, the soil MBC increased slowly, suggesting that the MBC value is likely to reach a constant level. SOC, soil total P (STP), available P (AvaiP) and the ratio of SOC to soil total N (C/N) all decreased monotonically with the growing years of alfalfa up to 13 yr and then increased. SOC was significantly positively correlated with STP, AvaiP, soil total C (STC) and soil total N (STN) (R=0.627**, 0.691**, 0.497*, 0.546*, respectively). MBC and LFOC were significantly positively correlated with the number of growing years of alfalfa (R=0.873*** and 0.521*, respectively), and LFOC was more sensitive to vegetation components, degree of cover and landform than to the number of years of growth. SOC showed a significant negative correlation with LFOC/SOC and MBC/SOC (R=−0.689**, −0.693**, respectively). A significant positive correlation exists between MBC and soil inorganic C (SIC). LFOC, MBC, LFOC/SOC and MBC/SOC were all significantly positively correlated with each other. Therefore, practices that involve water-harvesting technologies and add residues and phosphate fertilizer to soils should be promoted to improve soil nutrients and hydration and to postpone the degradation of alfalfa grasslands under long-term alfalfa production.     

Discriminating the effects of agricultural land management practices on soil fungal communities

The structure of fungal communities was examined in soil subjected to 5 years of different agricultural land management and tomato production practices. Length heterogeneity polymerase chain reaction (LH-PCR) of fungal rDNA internal transcribed spacer-1 (ITS-1) regions was used to create genomic fingerprints of the soil fungal communities. Three years after initiation of land management practices, univariate analysis of genetic diversity failed to detect differences among soil fungal communities in plots managed organically, conventionally or maintained free of vegetation by continuous tillage (disk fallow). Genetic diversity was significantly higher in plots maintained as a perennial pasture grass (Paspalum notatum var Argentine bahiagrass) or as an undisturbed weed fallow. The composition of soil fungal communities within organic, pasture grass or disk fallow plots were separated into unique clusters by non-parametric multivariate analysis of their Bray-Curtis similarity matrices, computed from the relative abundance of ITS-1 amplicons, while the composition of communities within disk fallow and conventional plots could not be distinguished from each other. Diversity of soil fungal communities was significantly reduced following the cultivation of tomato in year four when compared to the diversity in plots where tomato was not cultivated. Divergence in the composition of soil fungal communities was observed following the cultivation of tomato under all land management regimes except organic, where communities continued to remained clustered based upon similarities among their ITS-1 amplicons. Divergence in the composition of fungal communities became more pronounced following two major hurricanes (Francis and Jeanne, September 2004) except for communities in the organic and pasture grass plots. Following the completion of a second tomato crop in year 5, genetic diversity and richness was similar under all land management regimes except the pasture grass, where it remained significantly higher. By contrast, following two consecutive years of tomato production, unique but mutually similar compositions of fungal communities were detected only in plots subjected to the organic land management regime. This was supported by observations that fungal communities were dominated by a 341 bp rDNA amplicon fragment in all land management regimes except the organic. Cloning and sequencing indicated that the 341 bp fragment generated by LH-PCR had a sequencing size of 343 bp, which was most closely related to Fusarium oxysporum. Thus, land management practices that disturb or disrupt soil fungal communities will significantly reduce their diversity. However, the composition of soil fungal communities is more strongly influenced by land management practices and communities within an organically management system were more resistant to anthropogenic and meteorological disturbances.     

Salinity and sodicity effects on respiration and microbial biomass of soil

An understanding of the effects of salinity and sodicity on soil carbon (C) stocks and fluxes is critical in environmental management, as the areal extents of salinity and sodicity are predicted to increase. The effects of salinity and sodicity on the soil microbial biomass (SMB) and soil respiration were assessed over 12weeks under controlled conditions by subjecting disturbed soil samples from a vegetated soil profile to leaching with one of six salt solutions; a combination of low-salinity (0.5dSm⁻¹), mid-salinity (10dSm⁻¹), or high-salinity (30dSm⁻¹), with either low-sodicity (sodium adsorption ratio, SAR, 1), or high-sodicity (SAR 30) to give six treatments: control (low-salinity low-sodicity); low-salinity high-sodicity; mid-salinity low-sodicity; mid-salinity high-sodicity; high-salinity low-sodicity; and high-salinity high-sodicity. Soil respiration rate was highest (56–80mg CO₂-C kg⁻¹ soil) in the low-salinity treatments and lowest (1–5mg CO₂-C kg⁻¹ soil) in the mid-salinity treatments, while the SMB was highest in the high-salinity treatments (459–565mg kg⁻¹ soil) and lowest in the low-salinity treatments (158–172mg kg⁻¹ soil). This was attributed to increased substrate availability with high salt concentrations through either increased dispersion of soil aggregates or dissolution or hydrolysis of soil organic matter, which may offset some of the stresses placed on the microbial population from high salt concentrations. The apparent disparity in trends in respiration and the SMB may be due to an induced shift in the microbial population, from one dominated by more active microorganisms to one dominated by less active microorganisms.     

Long-term effects of tillage and fallow-frequency on soil quality attributes in a clay soil in semiarid southwestern saskatchewan

Reduced tillage management is being adopted at an accelerated rate on the Canadian prairies. This may influence soil quality and productivity. A study conducted on a clay soil (Udic Haplustert) in southwestern Saskatchewan, Canada, to determine the effects of fallow frequency [fallow-wheat (F-W) vs. continuous wheat (Cont W)] and tillage [no-tillage (NT) vs. conventional (CT) or minimum tillage (MT)] on yields of spring wheat (Triticum aestivum L.), was sampled after 3, 7 and 11 years to assess changes in selected soil quality attributes. Tillage had no effect on amount of crop residues returned to the land, but the tilled systems had significantly (P<0.05) lower total organic C and N in the 0–7.5 cm soil depth, though not in the 7.5–15 cm depth. Further, these differences were observed after only 3 years and persisted for the entire 11 years of the study. For example, in the 0–7.5 cm depth, organic C in F-W (MT) after 3 years was 10 480 kg ha⁻¹ and in F-W (NT) 13 380 kg ha⁻¹, while in Cont W (CT) and Cont W (NT) corresponding values were 11 310 and 13 400 kg ha⁻¹, respectively. After 11 years, values for F-W (MT) and F-W (NT) were 11 440 and 14 960 kg ha⁻¹, respectively, and for Cont W (CT) and Cont W (NT), 12 970 and 16 140 kg ha⁻¹, respectively. In contrast to total organic matter, two of the more labile soil quality attributes [i.e., C mineralization (C_min) and N mineralization (N_min)] did not respond to fallow frequency until after 7 years and only in the 0–7.5 cm depth. Microbial biomass (MB) and the ratio of C_min to MB [specific respiratory activity (SRA)], two attributes also regarded as labile, were not influenced by the treatments even after 11 years. After 11 years, only C_min and N_min among the labile soil quality attributes responded to the treatments. Surprisingly, the labile attributes were no more sensitive to the treatments than was total organic C or N. More research is required to determine why responses in this soil differed from those reported elsewhere.     

Long-term tillage effects on the distribution patterns of microbial biomass and activities within soil aggregates

The effects of tillage on the interaction between soil structure and microbial biomass vary spatially and temporally for different soil types and cropping systems. We assessed the relationship between soil structure induced by tillage and soil microbial activity at the level of soil aggregates. To this aim, organic C (OC), microbial biomass C (MBC) and soil respiration were measured in water-stable aggregates (WSA) of different sizes from a subtropical rice soil under two tillage systems: conventional tillage (CT) and a combination of ridge with no-tillage (RNT). Soil (0–20 cm) was fractionated into six different aggregate sizes (> 4.76, 4.76–2.0, 2.0–1.0, 1.0–0.25, 0.25–0.053, and < 0.053 mm in diameter). Soil OC, MBC, respiration rate, and metabolic quotient were heterogeneously distributed among soil aggregates while the patterns of aggregate-size distribution were similar among properties, regardless of tillage system. The content of OC within WSA followed the sequence: medium-aggregates (1.0–0.25 mm and 1.0–2.0 mm) > macro-aggregates (4.76–2.0 mm) > micro-aggregates (0.25–0.053 mm) > large aggregates (> 4.76 mm) > silt + clay fractions (< 0.053 mm). The highest levels of MBC were associated with the 1.0–2.0 mm aggregate size class. Significant differences in respiration rates were also observed among different sizes of WSA, and the highest respiration rate was associated with 1.0–2.0 mm aggregates. The C_mic/C_org was greatest for the large-macroaggregates regardless of tillage regimes. This ratio decreased with aggregate size to 1.0–0.25 mm. Soil metabolic quotient (qCO₂) ranged from 3.6 to 17.7 mg CO₂ g^− 1 MBC h^− 1. The distribution pattern of soil microbial biomass and activity was governed by aggregate size, whereas the tillage effect was not significant at the aggregate scale. Tillage regimes that contribute to greater aggregation, such as RNT, also improved soil microbial activity. Soil OC, MBC and respiration rate were at their highest levels for 1.0–2.0 mm aggregates, suggesting a higher biological activity at this aggregate size for the present ecosystem.     

Effects of long-term litter manipulation on soil carbon,nitrogen, and phosphorus in a temperate deciduous forest

Changes in above-ground litterfall can influence below-ground biogeochemical processes in forests. In order to examine how above-ground litter inputs affect soil carbon (C), nitrogen (N) and phosphorus (P) in a temperate deciduous forest, we studied a 14-year-old small-scale litter manipulation experiment that included control, litter exclusion, and doubled litter addition at a mature Fagus sylvatica L. site. Total organic C (TOC), total N (TN) and total P (TP), total organic P (TOP), bioavailable inorganic P (Pi), microbial C, N and P, soil respiration and fine root biomass were analyzed in the A and in two B horizons. Our results showed that litter manipulation had no significant effect on TOC in the mineral soil. Litter addition increased the bioavailable Pi in the A horizon but had no significant effect on N in the mineral soil. Litter exclusion decreased TN and TP in the B horizon to a depth of 10 cm. In the A horizon of the litter exclusion treatment, TP, TOP and bioavailable Pi were increased, which is most likely due to the higher root biomass in this treatment. The high fine root biomass seems to have counteracted the effects of the excluded aboveground litter. In conclusion, our study indicates that aboveground litter is not an important source for C in the mineral soil and that P recycling from root litter might be more important than from above-ground litter.     

微生物菌剂对菠菜生长特性及土壤微生物多样性的影响

通过化肥减量20%和40%并配施微生物菌剂试验,研究菌剂对菠菜营养生长的影响,并通过提取土壤微生物总DNA,进行16S rDNA的PCR-DGGE研究微生物多样性。结果表明:在菠菜生长后期,配施菌剂处理的叶绿素含量(SPAD值)和叶绿素荧光参数(Fv/Fm)较高,其中,T5(化肥减量40%+菌剂减量40%)处理SPAD为52.856,T3(化肥减量20%+菌剂减量40%)处理Fv/Fm为0.797,而在生长前期则表现为T1(全量化肥)处理较高;菠菜可食部分硝酸盐含量以对照(CK,不施肥)处理最高,为1 009.21 mg.kg-1,添加微生物菌剂处理(T2~T5)都明显少于CK和T1处理;对氮、磷、钾养分的吸收利用率以T2(化肥减量20%+全量菌剂)处理最好;菠菜产量化肥减量处理(T2~T5)较T1处理均增产,T4(化肥减量40%+全量菌剂)处理的增产量最大,平均产量达到277.73 g.盆-1,增加170%;常规化肥(T1)处理的土壤微生物丰富度指数最低,香农-威尔指数(Shannon-Wierner index)为0.398,较CK 0.498有所下降,而施用微生物菌剂的各处理(T2~T5)为0.547~0.983,土壤微生物多样性指数明显提高。微生物菌剂对菠菜起到显著促生作用,以T4处理最好,对提高菠菜土壤微生物多样性方面以T3处理最好。     

Long-term fertilization, manure and liming effects on soil organic matter and crop yields

Yield decline or stagnation and its relationship with soil organic matter fractions in soybean (Glycine max L.)–wheat (Triticum aestivum L.) cropping system under long-term fertilizer use are not well understood. To understand this phenomenon, soil organic matter fractions and soil aggregate size distribution were studied in an Alfisol (Typic Haplustalf) at a long-term experiment at Birsa Agricultural University, Ranchi, India. For 30 years, the following fertilizer treatments were compared with undisturbed fallow plots (without crop and fertilizer management): unfertilized (control), 100% recommended rate of N, NP, NPK, NPK+ farmyard manure (FYM) and NPK + lime. Yield declined with time for soybean in control (30 kg ha⁻¹ yr⁻¹) and NP (21 kg ha⁻¹ yr⁻¹) treatments and for wheat in control (46 kg ha⁻¹ yr⁻¹) and N (25 kg ha⁻¹ yr⁻¹) treatments. However, yield increased with time for NPK + FYM and NPK + lime treatments in wheat. At a depth of 0–15 cm, small macroaggregates (0.25–2 mm) dominated soil (43–61%) followed by microaggregates (0.053–0.25 mm) with 13–28%. Soil microbial biomass carbon (SMBC), nitrogen (SMBN) and acid hydrolysable carbohydrates (HCH) were greater in NPK + FYM and NPK + lime as compared to other treatments. With three decades of cultivation, C and N mineralization were greater in microaggregates than in small macroaggregates and relatively resistant mineral associated organic matter (silt + clay fraction). Particulate organic carbon (POC) and nitrogen (PON) decreased significantly in control, N and NP application over fallow. Results suggest that continuous use of NPK + FYM or NPK + lime would sustain yield in a soybean–wheat system without deteriorating soil quality.     

Response of soil microbial biomass and enzyme activities to the transient elevation of carbon dioxide in a semi-arid grassland

Although elevation of CO₂ has been reported to impact soil microbial functions, little information is available on the spatial and temporal variation of this effect. The objective of this study was to determine the microbial response in a northern Colorado shortgrass steppe to a 5-year elevation of atmospheric CO₂ as well as the reversibility of the microbial response during a period of several months after shutting off the CO₂ amendment. The experiment was comprised of nine experimental plots: three chambered plots maintained at ambient CO₂ levels of 360 μmol mol⁻¹ (ambient treatment), three chambered plots maintained at 720 μmol mol⁻¹ CO₂ (elevated treatment) and three unchambered plots of equal ground area used as controls to monitor the chamber effect.Elevated CO₂ induced mainly an increase of enzyme activities (protease, xylanase, invertase, alkaline phosphatase, arylsulfatase) in the upper 5 cm of the soil and did not change microbial biomass in the soil profile. Since rhizodeposition and newly formed roots enlarged the pool of easily available substrates mainly in the upper soil layers, enzyme regulation (production and activity) rather than shifts in microbial abundance was the driving factor for higher enzyme activities in the upper soil. Repeated soil sampling during the third to fifth year of the experiment revealed an enhancement of enzyme activities which varied in the range of 20-80%. Discriminant analysis including all microbiological properties revealed that the enzyme pattern in 1999 and 2000 was dominated by the CO₂ and chamber effect, while in 2001 the influence of elevated CO₂ increased and the chamber effect decreased.Although microbial biomass did not show any response to elevated CO₂ during the main experiment, a significant increase of soil microbial N was detected as a post-treatment effect probably due to lower nutrient (nitrogen) competition between microorganisms and plants in this N-limited ecosystem. Whereas most enzyme activities showed a significant post-CO₂ effect in spring 2002 (following the conclusion of CO₂ enrichment the previous autumn, 2001), selective depletion of substrates is speculated to be the cause for non-significant treatment effects of most enzyme activities later in summer and autumn, 2002. Therefore, additional belowground carbon input mainly entered the fast cycling carbon pool and contributed little to long-term carbon storage in the semi-arid grassland.     

Functional resilience of soil microbial communities depends on both soil structure and microbial community composition

The effects of soil structure and microbial community composition on microbial resistance and resilience to stress were found to be interrelated in a series of experiments. The initial ability of Pseudomonas fluorescens to decompose added plant residues immediately after a copper or heat stress (resistance) depended significantly on which of 26 sterile soils it was inoculated into. Subsequent studies showed that both the resistance and subsequent recovery in the ability of P. fluorescens to decompose added plant residues over 28 days after stress (resilience) varied significantly between a sandy and a clay-loam soil. Sterile, sandy and clay-loam soil was then inoculated with a complex microbial community extracted from either of the soils. The resulting microbial community structure depended on soil type rather than the source of inoculum, whilst the resistance and resilience of decomposition was similarly governed by the soil and not the inoculum source. Resilience of the clay-loam soil to heat stress did not depend on the water content of the soil at the time of stress, although the physical condition of the soil when decomposition was measured did affect the outcome. We propose that soil functional resilience is governed by the physico-chemical structure of the soil through its effect on microbial community composition and microbial physiology.     

Environmental conditions rather than microbial inoculum composition determine the bacterial composition,microbial biomass and enzymatic activity of reconstructed soil microbial communities

The composition of microbial communities and the level of enzymatic activity in the soil are both important indicators of soil quality, but the mechanisms by which a soil bacterial community is generated and maintained are not yet fully understood. Two soil samples were collected from the same location, but each had been subjected to a different long-term fertilization treatment and was characterized by different microbial diversity, biomass and physicochemical properties. These samples were γ-sterilized and swap inoculated. Non-sterilized soil samples along with sterilized and inoculated soil samples were incubated for eight months before their nutrient content, microbial biomass, enzymatic activity and bacterial composition were analyzed. Total phosphorus, and potassium concentrations along with the overall organic matter content of the non-sterilized soil were all equal to those of the same soil that had been sterilized and self/swap inoculated. Additionally, the microbial biomass carbon concentration was not affected by the specific inoculum and varied only by soil type. The activities of catalase, invertase, urease, protease, acid phosphatase and phytase were smaller in the sterilized soils that had been inoculated with organisms from chemical fertilizer amended soil (NPK) when compared to sterilized soil inoculated with organisms from manure and chemical fertilizer amended soil (NPKM) and non-sterilized soil samples. Bacterial 16S rRNA examined by 454-pyrosequencing revealed that the composition of bacterial community reconstructed by immigrant microbial inoculum in the soil was mainly influenced by its physicochemical properties, although the microbial inoculum contained different abundances of bacterial taxa. For example, the pH of the soil was the dominant factor in reconstructing a new bacterial community. Taken together, these results demonstrated that both soil microbial composition and functionality were primarily determined by soil properties rather than the microbial inoculum, which contributed to our understanding of how soil microbial communities are generated and maintained.