Ammonia oxidizer abundance in paddy soil profile with different fertilizer regimes

Studies about ammonia-oxidizing bacteria (AOB) and archaea (AOA) are often focused on topsoil, but little is known about their activity and distribution in subsoil. A long-term fertilizer experiment was conducted to assess the effects of different fertilizer treatments on AOB and AOA in vertical soil profiles of paddy soil plots that received no nitrogen fertilizer control (CK), NPK chemical fertilizers (CF), organic–inorganic mixed fertilizer (OIMF) and organic fertilizer (OF). Soil properties, potential nitrification rate (PNR) and amoA gene abundance of AOB and AOA were measured and analyzed by two-way ANOVA and correlation analysis. Quantitative PCR analysis of amoA genes showed that AOA were more abundant than AOB in all the soil samples. AOB declined sharply with soil depth. Compared with CK and OF treatments, CF and OIMF treatments had higher abundance of AOB throughout the soil profiles. However, AOA tend less responsive to soil depth and fertilizers compared to AOB. This caused the AOA/AOB ratios in subsoil higher than in topsoil, and in CK and OF higher than in CF and OIMF treatments. These results suggest that AOA are more abundant and can be better adapted to nutrient-poor subsoils than AOB, and autotrophic nitrification could likely be determined by a complex suite of environmental factors in vertical profiles of the paddy soil tested.     

Fluctuations in the abundance of ammonia oxidizers and the contents of inorganic nitrogen in solarized soil

Solarization makes a great impact on the abundance of ammonia oxidizers and nitrifying activity in soil. To elucidate fluctuations in the abundance of ammonia oxidizers and nitrification in solarized soil, copy numbers of amoA gene of ammonia-oxidizing bacteria (AOB) and archaea (AOA), viable number of ammonia oxidizers and inorganic nitrogen contents were investigated in greenhouse experiments. The copy number of amoA gene and the viable number of ammonia oxidizers were determined by the quantitative polymerase chain reaction and most probable number methods, respectively. Abundance of AOB based on the estimation of amoA gene copy numbers and viable counts of ammonia oxidizers was decreased by the solarization treatment and increased during the tomato (Solanum lycopersicum L.) cultivation period following the solarization. Effect of solarization on the copy number of amoA gene of AOA was less evident than that on AOB. The proportion of nitrate in inorganic nitrogen contents was declined by the solarization and increased during the tomato cultivation period following the solarization. Positive correlations were found between the proportion of nitrate in inorganic nitrogen content and the copy number of bacterial or archaeal amoA gene or the viable number of ammonia oxidizers; the copy number of bacterial amoA gene showed a strong correlation with the viable number of ammonia oxidizers. The present study revealed influences of solarization on the fluctuation in the abundance of ammonia oxidizers and dynamics of inorganic nitrogen contents in soil and the results indicate that the determination of amoA gene of AOB is possibly a quick and useful diagnostic technique for evaluating suppression and restoration of nitrification following solarization.     

Direct and indirect influence of arbuscular mycorrhizal fungi on abundance and community structure of ammonia oxidizing bacteria and archaea in soil microcosms

Both arbuscular mycorrhizal (AM) fungi and ammonia oxidizers are important soil microbial groups in regulating soil N cycling. However, knowledge of their interactions, especially the direct influences of AM fungi on ammonia oxidizers is very limited to date. In the present study, a controlled microcosm experiment was established to examine the effects of AM fungi and N supply level on the abundance and community structure of ammonia oxidizing bacteria (AOB) and archaea (AOA) in the rhizosphere of alfalfa plants (Medicago sativa L.) inoculated with AM fungus Glomus intraradices. Effects were studied using combined approaches of quantitative polymerase chain reaction (qPCR) and terminal-restriction fragment length polymorphism (T-RFLP). The results showed that inoculation with AM fungi significantly increased the plant dry weights, total N and P uptake. Concomitantly, AM fungi significantly decreased the amoA gene copy numbers of AOA and AOB in the root compartment (RC) but not in the hyphal compartment (HC). Moreover, AM fungi induced some changes in AOA community structure in HC and RC, while only marginal variations in AOA composition were observed to respond to N supply level in HC. Neither RC nor HC showed significant differences in AOB composition irrespective of experimental treatments. The experimental results suggested that AM fungi could directly shape AOA composition, but more likely exerted indirect influences on AOA and AOB abundance via the plant pathway. In general, AM fungi may play an important role in mediating ammonia oxidizers, but the AOA community appeared to be more sensitive than the AOB community to AM fungi.     

The role of ammonium oxidizing communities in mediating effects of an invasive plant on soil nitrification

Invasive plants often benefit from changes that they impose on soil microbes via positive plant–soil feedback, but the mechanisms that underlie these changes, and the legacy of their effects, remain poorly quantified. We investigated the impacts of an invasive annual grass, Microstegium vimineum, on the structure and functioning of soil microbial communities in a multi-year, field-based common garden experiment. Given previous reports that M. vimineum can both elevate nitrification rates in soil and benefit from enhanced nitrate availability, we sought to answer the following questions: 1) Does M. vimineum alter the abundance or composition of soil nitrifying microbial communities (ammonia oxidizing archaea and bacteria, AOA and AOB, respectively)? 2) Are such effects reversible or do soil legacy effects persist after M. vimineum is no longer present? After three years, invaded plots had greater AOA abundances than uninvaded native dominated plots, as well as different AOA community structure. However, after seven years, and following a period of M. vimineum replacement by native plants in the invaded plots, AOA abundances and nitrification rates declined toward levels found in uninvaded plots. Collectively, our results suggest that while the impacts of M. vimineum invasions on nitrogen cycling likely relate to their association with AOA, these effects may not persist if M. vimineum declines over time and native plants and their associated microbes are able to re-establish.     

Effects of repeated manure and fertilizer phosphorus additions on soil phosphorus dynamics under a soybean-wheat rotation

 Soil P availability and efficiency of applied P may be improved through an understanding of soil P dynamics in relation to management practices in a cropping system. Our objectives in this study were to evaluate changes in plant-available (Olsen) P and in different inorganic P (P_i) and organic P (P₀) fractions in soil as related to repeated additions of manure and fertilizer P under a soybean-wheat rotation. A field experiment on a Typic Haplustert was conducted from 1992 to 1995 wherein the annual treatments included four rates of fertilizer P (0, 11, 22 and 44 kg ha^–1 applied to both soybean and wheat) in the absence and presence of 16 t ha^–1 of manure (applied to soybean only). With regular application of fertilizer P to each crop the level of Olsen P increased significantly and linearly through the years in both manured and unmanured plots. The mean P balance required to raise Olsen P by 1 mg kg^–1 was 17.9 kg ha^–1 of fertilizer P in unmanured plots and 5.6 kg ha^–1 of manure plus fertilizer P in manured plots. The relative sizes of labile [NaHCO₃-extractable P_i (NaHCO₃-P_i) and NaHCO₃-extractable P₀ (NaHCO₃-P₀)], moderately labile [NaOH-extractable P_i (NaOH-P_i) and NaOH-extractable P₀ (NaOH-P₀)] and stable [HCl-extractable P (HCl-P) and H₂SO₄/H₂O₂-extractable P (resisual-P)] P pools were in a 1 : 2.9 : 7.6 ratio. Application of fertilizer P and manure significantly increased NaHCO₃-P_i and -P₀ and NaOH-P_i, and -P₀ fractions and also total P. However, HCl-P and residual-P were not affected. The changes in NaHCO₃-P_i, NaOH-P_i and NaOH-P₀ fractions were significantly correlated with the apparent P balance and were thought to represent biologically dynamic soil P and act as major sources and sinks of plant-available P. Received: 23 October 1997     

红壤稻田不同生育期土壤氨氧化微生物群落结构

以福建省红壤稻田土壤为对象,通过提取土壤总DNA,利用特异引物进行PCR(聚合酶链反应)扩增和DGGE(变性梯度凝胶电泳)并结合DNA克隆测序,研究了水稻生长过程中稻田土壤氨氧化细菌和氨氧化古菌群落结构的变化。结果显示:稻田土壤具有丰富的氨氧化细菌和氨氧化古菌资源。水稻生长过程中土壤氨氧化细菌群落组成较为稳定,只表现出水稻生长前期(苗期、分蘖期)和中后期(孕穗期、成熟期)间存在一定差异。而土壤氨氧化古菌群落组成变化较大,在水稻生长的苗期、分蘖期、孕穗期和成熟期4个时期间均存在一定差异。在水稻生长过程中,土壤氨氧化细菌群落多样性指数无显著性变化,但氨氧化古菌群落多样性指数随水稻生长明显提高,孕穗期后才达到平稳。水稻生长前期土壤硝化势也具有显著上升趋势,孕穗期时达到最高,而后有所下降。土壤硝化势与氨氧化古菌群落多样性指数具有显著正相关性,与氨氧化细菌没有相关性。研究表明,氨氧化古菌对红壤稻田土壤硝化作用的影响程度较大,证实了氨氧化微生物尤其是氨氧化古菌在稻田土壤微生物组成及其生态系统功能中的重要性。     

Effects of farmyard manure and inorganic fertilizer on the dynamics of soil microbial biomass in a tropical dryland agroecosystem

Changes in the soil microbial biomass following applications of farmyard manure and inorganic fertilizer, alone and in combination, were studied for two annual cycles in a rice-lentil crop sequence grown under rainfed tropical dryland conditions. During the two annual cycles the microbial biomass C range (g g^-1) was 146–241 (x = 204), 191–301 (245), 244–382 (305), and 294–440 (365) in control, fertilizer, manure and manure+fertilizer plots, respectively. The corresponding ranges for microbial biomass N (g g^-1) were 16.5–21.0 (19.5), 20.4–38.2 (26.0), 23.0–34.6 (27.0) and 26.2–42.4 (33.3), and for microbial biomass P (g g^-1) 4.4–8.2 (7.0) 6.0–11.2 (9.6), 11.2–22.0 (17.0), and 10.0–25.4 (18.3). The maximum increase in the microbial biomass, due to these inputs was observed under the manure+fertilizer treatment followed, in decreasing order, by manure alone and fertilizer alone. Within individual crop periods the levels of microbial biomass decreased sharply from the seedling to the flowering stage and then increased slightly with crop maturity. The maximum levels of microbial biomass C and P were observed during the summer fallow. The maximum accumulation of microbial biomass N occurred in the early rainy season, immediately after the soil amendments. Microbial biomass C, N, and P were positively related to each other throughout the annual cycle.     

Long-term fertilization, manure and liming effects on soil organic matter and crop yields

Yield decline or stagnation and its relationship with soil organic matter fractions in soybean (Glycine max L.)–wheat (Triticum aestivum L.) cropping system under long-term fertilizer use are not well understood. To understand this phenomenon, soil organic matter fractions and soil aggregate size distribution were studied in an Alfisol (Typic Haplustalf) at a long-term experiment at Birsa Agricultural University, Ranchi, India. For 30 years, the following fertilizer treatments were compared with undisturbed fallow plots (without crop and fertilizer management): unfertilized (control), 100% recommended rate of N, NP, NPK, NPK+ farmyard manure (FYM) and NPK + lime. Yield declined with time for soybean in control (30 kg ha⁻¹ yr⁻¹) and NP (21 kg ha⁻¹ yr⁻¹) treatments and for wheat in control (46 kg ha⁻¹ yr⁻¹) and N (25 kg ha⁻¹ yr⁻¹) treatments. However, yield increased with time for NPK + FYM and NPK + lime treatments in wheat. At a depth of 0–15 cm, small macroaggregates (0.25–2 mm) dominated soil (43–61%) followed by microaggregates (0.053–0.25 mm) with 13–28%. Soil microbial biomass carbon (SMBC), nitrogen (SMBN) and acid hydrolysable carbohydrates (HCH) were greater in NPK + FYM and NPK + lime as compared to other treatments. With three decades of cultivation, C and N mineralization were greater in microaggregates than in small macroaggregates and relatively resistant mineral associated organic matter (silt + clay fraction). Particulate organic carbon (POC) and nitrogen (PON) decreased significantly in control, N and NP application over fallow. Results suggest that continuous use of NPK + FYM or NPK + lime would sustain yield in a soybean–wheat system without deteriorating soil quality.     

水稻生育期内红壤稻田氨氧化微生物数量和硝化势的变化

利用荧光定量PCR(Real-timePCR)技术,通过特异引物检测amoA基因拷贝数分析了水稻不同生育期红壤稻田土壤中氨氧化细菌(Ammonia oxidizing bacteria,AOB)和氨氧化古菌(Ammonia oxidizing archaea,AOA)的数量变化,并测定了土壤潜在硝化势。结果显示:红壤稻田土壤中AOA数量显著高于AOB,二者比例在1.6～120.7之间;红壤稻田根层土中AOA数量显著高于表土,随水稻生长根层和表土中AOA数量均逐渐增加,且根层土中增加幅度更大;在水稻生长前期表土中AOB数量较多,孕穗期后根层土中AOB数量显著增加且高于表土。水稻生长期内土壤潜在硝化势也具有逐渐增加趋势,且根层土潜在硝化势增加幅度更大。根层土中潜在硝化势与AOB和AOA数量均呈显著正相关,而表土中潜在硝化势只与AOA数量存在显著正相关。研究表明,红壤稻田土壤中AOA数量更为丰富,且与硝化作用的关联程度更为密切,证实了氨氧化微生物在红壤稻田土壤微生物组成及其生态系统功能中的重要性。     

海水稻根际效应对滨海盐碱地土壤氨氧化微生物的影响

滨海盐碱地的特殊环境严重限制了土壤氮素转化和利用。微生物介导的水稻根际氨氧化过程是盐碱稻田土壤氮循环的关键过程,但限于研究盲点和技术不足,海水稻根际效应对滨海盐碱地土壤氨氧化微生物群落结构的影响仍少有报道。据此,本研究以“海稻86”为研究对象,分别设置低盐浓度(2 g·kg^–1)和高盐浓度(6 g·kg–1)两组处理进行盆栽试验。结果显示：种植海水稻70 d后,高盐和低盐处理根际土壤的pH分别下降了0.82和0.70个单位,土壤有机质(SOM)含量下降了6.41和4.46 g·kg^–1,腐殖质(HU)含量提高了5.76和4.45 g·kg^–1,全氮(TN)含量减少0.46和0.37 g·kg^–1,表明海水稻可通过降低盐碱地土壤pH,加速有机质分解转化,提高土壤氮循环速率。水稻根际作用可显著提高土壤微生物生物量碳(MBC)、微生物生物量氮(MBN)和微生物呼吸强度,并在种植第55天达到最高,在高盐处理中分别达到850.0 mg·kg^–1、72.2 mg·kg^–1     

模拟条件下土壤硝化作用及硝化微生物对不同水分梯度的响应

以江苏滨海县一植稻土壤为研究对象,在微宇宙培养条件下设置了不同水分处理(最大持水量的30%、60%、90%和淹水2 cm深),研究了硝化作用及硝化微生物对水分变化的响应特征。结果表明:淹水处理显著降低了土壤的氧化还原电位(Eh),但所有处理土壤Eh变化范围为330~500 m V,土壤整体处于氧化态。在每7天向土壤加入10 mg kg-1NH+4-N的连续培养过程中,各个水分处理均观察到明显的NH+4-N降低和NO-3-N累积的现象,60%WHC处理下土壤硝态氮累积最显著和迅速,90%WHC处理次之,随培养时间延长,30%WHC和淹水处理也观察到明显的硝化作用。淹水处理中氨氧化细菌(Ammonia-oxidizing bacteria,AOB)的数量显著高于非淹水处理,且淹水处理中AOB在DGGE图谱上的条带更加清晰明亮,而氨氧化古菌(Ammonia-oxidizing archaea,AOA)的群落组成和数量在不同水分处理间无明显变化。表明该土壤中AOB对水分条件变化响应灵敏,是该土壤的硝化作用、尤其是淹水条件下硝化作用发生的主要原因。     

Effect of organic and inorganic soil nitrogen amendments on mouldboard plow draft

A long-term field experiment with continuous corn, corn–soybean, and corn–alfalfa rotations, and different organic and inorganic soil nitrogen amendments was established at Ottawa, Ont., in 1991. Amendments applied to continuous corn were none, inorganic fertilizer at 100 and 200 kg N ha⁻¹, stockpiled and rotted manure, each at 50 and 100 Mg ha⁻¹ (wet weight). Amendments applied in the corn year to the 2-year rotations were none, inorganic fertilizer at 100 kg N ha⁻¹, and stockpiled and rotted manure at 50 Mg ha⁻¹. Mouldboard plow draft and tractor fuel consumption measurements were made with Agriculture and Agri-Food Canada’s instrumented research tractor in conjunction with normal fall tillage in 1991 prior to amendment application, and for 4 years from 1996 to 1999.

Results showed a small difference among the amendment treatments in 1996 and 1997, and a much larger difference in 1998 and 1999. After 8 years of amendment application, plots receiving the manure amendments at the high rates exhibited from 27 to 38% lower plow draft and 13 to 18% lower tractor fuel consumption than those receiving the inorganic fertilizer. The difference was less for plots receiving the lower manure rates. The same trend occurred in the 2-year rotation plots where manures were applied in alternate years, although, the differences were much lower, and not always significant. The data clearly show that changes in soil structure and organic matter accompanying repeated applications of manure are manifested in reduced tillage energy.     

不同施肥制度对玉米生育期土壤微生物量的影响

通过测定不同施肥制度下玉米土壤微生物量碳、氮的动态变化,探讨了不同施肥制度对玉米土壤的培肥效应。研究结果表明,与无肥、单施有机肥、单施化肥相比,有机肥与N、P、K肥配合施用能显著增加玉米各生育时期的土壤微生物量碳、氮,促进土壤微生物量显著增长,增强了土壤养分容量的供应强度,有利于培肥土壤。     

石灰和双氰胺对红壤酸化和硝化作用的影响及其机制

施用石灰是改良酸性土壤的重要措施,但其对土壤硝化作用的增强不仅加速土壤酸化,也增加硝态氮流失风险.传统的硝化抑制剂双氰胺(Dicyandiamide,DCD)能否在石灰改变pH的条件下始终有效抑制硝化是当前红壤区生产中亟需解决的问题.采用短期土壤培养试验,探讨了不同用量石灰与DCD配合施用对土壤酸化和硝化作用的影响及其...     

长期施有机肥与缺素施肥对潮土微生物活性的影响

利用中国科学院封丘农业生态国家实验站潮士农田生态系统养分平衡长期定位试验地,研究长期施有机肥或缺索施肥对农田土壤呼吸强度及酶活性的影响.结果发现,与不施肥对照(CK)相比.施肥处理均不同程度地提高了土壤的呼吸强度及转化酶、脲酶与磷酸酶活性;从N、P、K平衡施肥角度比较,施有机肥[OM)与有机无机配施(1/20M+1/2NPK)的效果均显著高于施无机肥(p<0.05);从缺素施肥角度分析,缺P显著低于NPK处理(p<0.05),缺N次之,缺K影响较小.结果表明,长期配施有机肥更有利于提高潮土的微生物活性,长期缺施P肥最不利于保育潮土的微生物学质量.     

Analysis of manure and soil nitrogen mineralization during incubation

Understanding the N-cycling processes that ensue after manuring soil is essential in order to estimate the value of manure as an N fertilizer. A laboratory incubation of manured soil was carried out in order to study N mineralization, gas fluxes, denitrification, and microbial N immobilization after manure application. Four different manures were enclosed in mesh bags to allow for the separate analysis of manure and soil. The soils received 0.15 mg manure N g^–1 soil, and the microcosms were incubated aerobically and sampled throughout a 10-week period. Manure addition resulted in initial NH₄-N concentrations of 22.1 to 36.6 mg kg^–1 in the microcosms. All manured microcosms had net declines in soil mineral N. Denitrification resulted in the loss of 14.7 to 39.2% of the added manure N, and the largest N losses occurred in manures with high NH₄-N content. Increased soil microbial biomass N amounted to 6.0 to 8.6% of the added manure N. While the microcosms as a whole had negative N mineralization, all microcosms had positive net nitrification within the manure bags. Gas fluxes of N₂O and CO₂ increased in all manured soils relative to the controls. Our results show that measurement of microbial biomass N and denitrification is important to understand the fate of manure N upon soil application.     

Effects of cattle manure on selected soil physical properties of smallholder farms on two soils of Murewa,Zimbabwe

The effects of cattle manure and inorganic N‐fertilizer application on soil organic carbon (SOC), bulk density, macro‐aggregate stability and aggregate protected carbon were determined on clay and sandy soils of the Murewa smallholder farming area, Zimbabwe. Maize was grown in four fields termed homefields (HFs) and outfields (OFs) because of spatial variability induced by management practices and with the following fertility treatments: control (no fertility amelioration), 5, 15 and 25 t/ha cattle manure + 100 kg/ha N applied annually for seven consecutive years. The addition of cattle manure resulted in significant (P < 0.01) increases in SOC, macro‐aggregate stability and aggregate protected carbon in clay soils from at least the 5 t/ha cattle manure rate and was comparable between HFs and OFs on clay soils. Aggregate protected carbon in clay soils was significantly higher from the 15 and 25 t/ha cattle manure rates compared to the 5 t/ha cattle manure treatment. In contrast, only SOC was significantly (P < 0.05) increased with the addition of cattle manure on the sandy soils, while bulk density, macro‐aggregate stability and aggregate protected carbon were not significantly changed. Bulk density was also not significantly (P > 0.05) different on the clay soils. A significant and positive linear relationship (r² = 0.85) was found between SOC and macro‐aggregate stability, while an r² value of 0.82 was obtained between SOC and aggregate protected carbon on the clay soils. However, no regressions were performed on data from the sandy soils because of the lack of significant changes in soil physical properties. Application of cattle manure and inorganic N‐fertilizer significantly increased (P < 0.05) maize grain yield on both soil types. Results show that inorganic N‐fertilizer combined with cattle manure at 5–15 t/ha per yr is necessary to increase maize yields and SOC on sandy soils in Murewa, while at least 15 t/ha per yr cattle manure is required on the clay soils to improve physical properties in addition to maize yields and SOC.     

长期施肥对水稻土剖面氨氧化古菌和细菌丰度及组成的影响

长期施肥影响稻田土壤理化性质和硝化微生物群落,但长期施肥对稻田不同土层氨氧化古菌(AOA)和氨氧化细菌(AOB)群落结构的影响尚不明确.以湖南宁乡稻田不同施肥制度长期定位试验为平台,选取不施肥(CK)、施秸秆有机肥(ST)、有机-无机肥配施(OM)和施全量化肥(NPK)4个处理,采用实时荧光定量PCR和Illumina...     

有机-无机肥料配施应用在蕹菜上的效果

试验结果表明,供试土壤缺钾是蕹菜生长的主要养分限制因子之一。单施有机肥无法满足蕹菜高产栽培的养分供给;在NP基础上施钾肥增产155 13%;有机-无机肥料配合施用,比单施化肥处理的增产8 57%,比单施有机肥处理的增产110 65%;蕹菜对氮、磷、钾养分的吸收率显著提高。     

Effect of soil aggregate size and dicyandiamide on N2O emissions and ammonia oxidizer abundance in a grazed pasture soil

Nitrous oxide (N₂O) is a potent greenhouse gas, which is mainly produced from agricultural soils. Ammonia oxidation is the rate‐determining step in N₂O production, and the process is carried out by ammonia oxidizers, bacteria and archaea. Soil aggregate size has been shown to alter soil properties, which affect N₂O emissions and bacterial communities. However, the effect of aggregate size on temporal and total N₂O emissions and ammonia‐oxidizing bacteria (AOB) and archaea (AOA) is not fully understood. This incubation study investigated the effect of three different soil aggregate sizes on N₂O emissions and ammonia oxidizer abundance under high urine‐N concentrations and the effectiveness of a nitrification inhibitor, dicyandiamide (DCD), at reducing N₂O emissions in different aggregate soils. It was found that temporal patterns of N₂O emissions were affected by aggregate size with higher peak emissions in the large and medium aggregates. However, the total emissions were the same due to a ‘switch’ in emissions at day 66, after which smaller aggregates produced higher N₂O emissions. It is suggested that the switch was caused by an increase in aggregate disruption in the small aggregates, following the urine application, due to their higher surface area to volume ratio. AOB and AOA abundances were not significantly affected by aggregate size. DCD was effective in reducing N₂O emissions in all aggregate sizes by an average of 79%. These results suggest that similar ammonia oxidizer abundance is found in soils of different aggregate sizes, and the efficacy of DCD in reducing N₂O emissions was not affected by aggregate size of the soil.