Distribution of yeast complexes in the profiles of different soil types

The number and taxonomic structure of the yeast complexes were investigated in the full profiles of the soddy-podzolic soil (Central Forest State Nature Biosphere Reserve), dark gray forest soil (Kaluzhskie Zaseki Reserve), and chernozem (Privolzhskaya Forest-Steppe Reserve). In all these soils, the number of yeasts was maximal (10⁴ CFU/g) directly under the litter; it drastically decreased with the depth. However, at the depth of 120–160 cm, the number of yeasts significantly increased in all the soils; their maximum was found in the illuvial horizon of the soddy-podzolic soil. Such a statistically significant increase in the number of yeasts at a considerable depth was found for the first time. Different groups of yeasts were present in the yeast communities of different soils. The species structure of yeast communities changed little in each soil: the same species were isolated both from the soil surface and from the depth of more than 2 m. The results showed that yeasts could be used for soil bioindication on the basis of specific yeast complexes in the profiles of different soil types rather than individual indicative species.     

The influence of <Emphasis Type="Italic">Aster x salignus</Emphasis> Willd. Invasion on the diversity of soil yeast communities

The annual dynamics of yeast communities were studied in the soddy-podzolic soil under the thickets of Aster x salignus Willd., one of the widespread invasive plant species in central Russia. Yeast groups in the soils under continuous aster thickets were found to differ greatly from the yeast communities in the soils under the adjacent indigenous meadow vegetation. In both biotopes the same species (Candida vartiovaarae, Candida sake, and Cryptococcus terreus) are dominants. However, in the soils under indigenous grasses, eurybiontic yeasts Rhodotorula mucilaginosa, which almost never occur in the soil under aster, are widespread. In the soil under aster, the shares of other typical epiphytic and pedobiontic yeast fungi (ascomycetic species Wickerhamomyces aniomalus, Barnettozyma californica and basidiomycetic species Cystofilobasidium macerans, Guehomyces pullulans) significantly increase. Thus, the invasion of Aster x salignus has a clear effect on soil yeast complexes reducing their taxonomic and ecological diversity.     

Specific features of the dynamics of epiphytic and soil yeast communities in the thickets of Indian balsam on mucky gley soil

The annual dynamics of the number and taxonomic composition of yeast communities were studied in the phyllosphere, on the flowers, and on the roots of Indian balsam (Impatiens glandulifera Royle) and in the mucky gley soil under the thickets of this plant. It was shown that typical phyllosphere yeast communities with a predominance of the red-pigmented species Rhodotorula mucilaginosa and Rhodotorula glutinis and the typical epiphyte Cryptococcus magnus are formed on the leaves of this annual hygrophyte. However, yeast groups with a predominance of the ascosporous species Saccharomyces paradoxus, Kazachstania barnettii, and Torulaspora delbrueckii, which are not typical of soils at all, were found in the mucky gley soil under the thickets of Indian balsam. Thus, the epiphytic and soil yeast complexes under the thickets of Indian balsam are represented by two entirely discrete communities without common species. In other biogeocenoses of the forest zone, the rearrangement of the structure of yeast communities in passing from the aboveground substrates to the soil proceeds gradually, and most of the species can be isolated both from the aboveground parts of plants and from the soil. The strong difference between the yeast communities in the phyllosphere of Indian balsam and in the soil under its thickets is apparently related to the fact that the annual hygrophytes are decomposed very quickly (during several days after the first frosts). Because of this, an intermediate layer between the phyllosphere and the soil (the litter layer), in which epiphytic microorganisms can develop, is not formed under these plants.     

Yeast Communities of Chestnut Soils under Vineyards in Dagestan

The study of yeast communities in chestnut soils (Kastanozems) under vineyards in the Republic of Dagestan made it possible to isolate 20 yeast species. Most of the yeasts under vineyards belonged to ascomycetes, among which species of the Saccharomycetaceae family (in particular, Saccharomyces cerevisiae) comprised a significant part. The obtained results indicate that the soils under vineyards keep the pool of microbial diversity and ensure preservation of many species typical for grapes. The method of enrichment culture on grape juice medium proved to be more efficient than other methods of analysis with respect to the number of isolated species and the rate of their detection. However, implementation of different techniques to study yeasts’ diversity can give somewhat different results; a set of methods should be used for an integrated analysis.     

The seasonal dynamics of yeast communities in the rhizosphere of soddy-podzolic soils

The annual dynamics of the number and taxonomic composition of yeast was studied in the rhizosphere of two plant species (Ajuga reptans L. and Taraxacum officinale Wigg.) in a forb-birch forest on soddy-podzolic soil. Eurybiont phyllobasidial cryptococci and red-pigmented phytobionts Rhodotorula glutinis were found to predominate in the phyllosphere of these plants, whereas the typical pedobionts Cryptococcus terricola and Cr. podzolicus occurred on the surface of roots and in the rhizosphere. The seasonal changes in the number and species composition of the yeast communities in the rhizosphere were more smooth as compared to those in the phyllosphere. In the period of active vegetation of the plants, the phytobiont yeasts develop over their whole surface, including the rhizoplane. Their number on the aboveground parts of the plants was significantly lower than that of the pedobiont forms. Thus, the above-and underground parts of the plants significantly differed in the composition of the dominant species of epiphytic yeasts.     

Microbial complexes of hydromorphic soils in the Selenga River delta (Baikal region)

The number and the biomass of microorganisms were determined in the soils of the floodplain and islands in the Selenga River delta. The population of fungi in the soils studied was low. The number of saprotrophic prokaryote microorganisms varied from 10⁶–10⁸ CFU/g of soil in the upper horizons to 10⁴–10⁵ CFU/g in the lower horizons of the soils. This pattern is typical for most zonal soils. The microbial biomass in the floodplain soils was 2–4 times as high as that in the soils of the islands. The number of microorganisms of different ecologic-trophic groups participating in the nitrogen and carbon mobilization was much lower than that in the hydromorphic soils of the Transbaikal region or in the cryogenic soils of the Angara River basin (Irkutsk district). The low coefficient of microbiological mineralization and the low coefficient showing the lack of nitrogen (coefficient of oligotrophness) in the soils indicated the weak processes of organic matter decomposition in the soils studied. During the season investigated (August–September), the bacterial complexes in all the soils were dominated by bacteria of the genera Bacillus, Pseudomonas, and Aquaspirillum. In the floodplain soils, streptomycetes constituted a considerable part of the microbial complexes of the floodplain soils, whereas, in the soils of the islands, their number was minor.     

Aerobic and microaerophilic actinomycetes of typical agropeat and peat soils

A high number (from tens of thousands to millions of CFU/g of soil) of actinomycetes and a high diversity of genera were found in typical peat and agropeat soils. Agricultural use increases the number and diversity of the actinomycete complexes of the peat soils. In the peat soils, the actinomycete complex is represented by eight genera: Streptomyces, Micromonospora, Streptosporangium, Actinomadura, Microbispora, Saccharopolyspora, Saccharomonospora, and Microtetraspora. A considerable share of sporangial forms in the actinomycete complex of the peat soils not characteristic of the zonal soils was revealed. The number of actinomycetes that develop under aerobic conditions is smaller by 10–100 times than that of aerobic forms in the peat soils. Among the soil actinomycetes of the genera Streptomyces, Micromonospora, Streptosporangium, Actinomadura, Microbispora, and Microtetraspora, the microaerophilic forms were found; among the Saccharopolyspora and Saccharomonospora, no microaerophilic representatives were revealed.     

Comparative Analysis of the Number and Structure of the Complexes of Microscopic Fungi in Tundra and Taiga Soils in the North of the Kola Peninsula

The number, biomass, length of fungal mycelium, and species diversity of microscopic fungi have been studied in soils of the tundra and taiga zones in the northern part of the Kola Peninsula: Al-Fe-humus podzols (Albic Podzols), podburs (Entic Podzols), dry peaty soils (Folic Histosols), low-moor peat soils (Sapric Histosols), and soils of frost bare spots (Cryosols). The number of cultivated microscopic fungi in tundra soils varied from 8 to 328 thousand CFU/g, their biomass averaged 1.81 ± 0.19 mg/g, and the length of fungal mycelium averaged 245 ± 25 m/g. The number of micromycetes in taiga soils varied from 80 to 350 thousand CFU/g, the number of fungal propagules in some years reached 600 thousand CFU/g; the fungal biomass varied from 0.23 to 6.2 mg/g, and the length of fungal mycelium varied from 32 to 3900 m/g. Overall, 36 species of fungi belonging to 16 genera, 13 families, and 8 orders were isolated from tundra soils. The species diversity of microscopic fungi in taiga soils was significantly higher: 87 species belonging to 31 genera, 21 families, and 11 orders. Fungi from the Penicillium genus predominated in both natural zones and constituted 38–50% of the total number of isolated species. The soils of tundra and taiga zones were characterized by their own complexes of micromycetes; the similarity of their species composition was about 40%. In soils of the tundra zone, Mortierella longicollis, Penicillium melinii, P. raistrickii, and P. simplicissimum predominated; dominant fungal species in soils of the taiga zone were represented by M. longicollis, P. decumbens, P. implicatum, and Umbelopsis isabellina.     

Inclusion of soils and soil-like bodies of urban territories into the Russian soil classification system

The results of the Internet discussion on the classification of urban soils aimed at evaluating their possible inclusion into the modern Russian soil classification system adopted by a wide range of specialists are presented. The first step was to address the urban diagnostic horizons as the basis for identifying soil types according to the rules of the Russian soil classification. New diagnostic horizons were proposed for urban soils: urbic (UR), filled compost-mineral (RAT), and filled peat (RT). The combination of these horizons with other diagnostic horizons and layers of technogenic materials correspond to different soil types. At the subtype level, the diagnostic properties (qualifiers) that may reflect both natural phenomena (gley, alkalinity) and technogenic impacts on the soils (urbistratified; phosphatic; or poorly expressed urban—ur, rat, rt) are used. Some corrections were proposed for the system of parent materials in urban environments. Urban soils formerly described in another nomenclature—urbanozems, urbiquasizems, and culturozems—are correlated with the taxa in all the trunks of the system. The proposals accepted can be used for the next updated version of the new Russian soil classification system.     

The number of microorganisms and the microbiological activity of human-modified cryogenic pale soils of Yakutia

Specific features of the microbial population—the high number of all the groups of microorganisms (1.6 × 10³–3.5 × 10⁷) similar to their abundance in steppe soils of the Transbaikal region and the distribution of microorganisms along the soil profile (without a decrease in their number with depth)—were revealed in a cryogenic weakly solodized loamy sandy pale soil. Unlike the soils of the Transbaikal region and central Russia, where bacteria, as a rule, are accumulated in the litter and upper soil horizons, in the undisturbed and weakly disturbed soils of Yakutia, the number of microorganisms is rather high within the whole soil profile. In the strongly disturbed agropale soil of croplands, the distribution of microorganisms is the same as in the soils of the Transbaikal region and European Russia. In the cryogenic soils studied, actinomycetes predominated, and their number varied from 47 000 to 35 000 000 CFU/g of soil. The number of microorganisms positively (r = 1) correlated with the soil moisture.     

Do long-lived ants affect soil microbial communities?

This study was designed to test the hypothesis that desert ant species that build nests that remain viable at a particular point in space for more than a decade produce soil conditions that enhance microbial biomass and functional diversity. We studied the effects of a seed-harvester ant, Pogonomyrmex rugosus, and two generalist ant species, Aphaenogaster cockerelli and Myrmecocystus depilis, on soil microbial communities. Microbial biomass was higher in P. rugosus-modified soils than in reference soils when soil water content was higher than 3%. Microbial biomass was either higher in reference soils or exhibited no difference in reference soils and nest-modified soils of A. cockerelli and M. depilis. There were differences in microbial functional diversity and microbial community level physiological profiles (MicroResp method) between ant-nest-modified and reference soils of the three ant species on some sampling dates. Temporal patterns of soil microbial communities associated with the ant species resulted from differences in soil moisture, density, and species composition of the annual plant communities associated with the ant nests and in reference areas. Differences in annual plant communities associated with ant nests and surrounding areas resulted in different chemical inputs into the soil organic-matter pools. This study shows that generalizations about the effects of long-lived ant nests on soil biota in arid regions must consider feeding behaviors of the ant species and temporal patterns of rainfall.     

Distribution of and insights from soil protozoa of the Olympic coniferous rain forest

Decomposition occurs in the surface litter and soil to support temperate rainforests, but little is known about the protozoa that stimulate bacterial activity and turnover. I examined surface litter and top soils, fallen logs, and epiphytes within 2 m from the soil surface in Olympic National Park, USA, of the Pacific Northwest Temperate Coniferous Rain Forest. Ciliates in surface litter numbered 180-580 g⁻¹ dry weight, but were reduced by 20-60% in the underlying soils. Testate amoebae numbered 18,000-77,000 g⁻¹ dry weight in both litter and soil although they were often more abundant in underlying soils. Rotting logs, essential for tree regeneration, supported similar numbers of ciliates, but twice the numbers of testate amoebae. In three epiphytic soils, ciliates numbered 350-550, and testate amoebae 35,000-195,000 g⁻¹ dry weight of soil. In these soils, 26 species of gymnamoebae, 64 species of ciliates, and 113 species of testate amoebae were found. About 65% of the individuals in ciliate and 45% in testate amoebae populations were small, r-selected taxa. Rain forest soil protozoa have distinct testate amoebae populations, and are characterized by enormous biodiversity, the dominance of acrostome species, the proliferation of Euglypha and Nebela species, and the appearance of aquatic taxa. Ecological succession of ciliates and testate amoebae follows an additive (non-replacement) pattern according to a neutral model. The large numbers of persistent r-selected species respond to ecosystem disturbances by mobilizing quickly to resume the bacterivory necessary to help restore the recovering above-ground plant community.     

Mycelial bacteria of saline soils

The actinomycetal complexes of saline soils comprise the representatives of the Streptomyces and Micromonospora genera, the number of which are hundreds and thousands of CFU/g soil. Complexes of mycelial bacteria in saline soils are poorer in terms of number (by 1–3 orders of magnitude) and taxonomic composition than the complexes of the zonal soil types. A specific feature of the actinomycetal complexes of saline soils is the predominance of halophilic, alkaliphilic, and haloalkaliphilic streptomycetes that well grow at pH 8–9 and concentrations of NaCl close to 5%. Actinomycetes in saline soils grow actively, and the length of their mycelium reaches 140 m in 1 gram of soil. The haloalkaliphilic streptomycetes grow fast and inhibit the formation of spores at pH 9 and high concentrations of salts (Na₂SO₄ and MgCl₂, 5%) as compared to their behavior on a neutral medium with a salt concentration of 0.02%. They are characterized by the maximal radial growth rate of colonies on an alkaline medium with 5% NaCl.     

Anthropogenic transformation of soils in the Pokrovskoe-Streshnevo Park (Moscow) and adjacent residential areas

The diversity of soils within the specially protected natural territory of Pokrovskoe-Streshnevo in Moscow is discussed. The soils of this large park are not affected by the modern construction activities that delete the features inherited from the early stages of the anthropogenic transformation of soils in Moscow. They are characterized by the book-like type of soil memory, which makes it possible to trace several sequences of the anthropogenic soil transformation. The background natural soils-rzhavozems (Chromic Cambisols)—have been transformed into agrogenic soils (agrosols) and postagrogenic soils (postagrosols) under abandoned plowlands, into urbo-soils and urbanozems in the areas of former or modern settlements, and into techno-soils in the areas of active excavation works and engineering reclamation. The change in the character of the land use without the accumulation of osediments on the surface leads to the development of polygenetic soil horizons.     

Properties of soils and soil-like bodies in the Vorkuta area

The specific features of the formation of soils and soil-like bodies on technogenic substrates in Vorkuta—a polar city specializing in coal mining—are characterized. According to the new Russian soil classification system, these soils are classified as urbanozems (urban soils) and constructozems (soil-like bodies constructed by humans); the latter are subdivided into recreazems (soil-like bodies of recreation zones) and replantozems (soil-like bodies of reclaimed urban areas with planted vegetation). They are characterized by the increased content of heavy metals and by some alkalization of the upper soil horizons in comparison with the natural background soils. The benz(a)pyrene content in most of the soil samples exceeds the maximum permissible concentration (MPC). The maximum levels of the soil contamination with benz(a)pyrene reach 80 MPCs. According to the total contamination index calculated relative to the background concentrations of the major contaminants, the upper horizons of the investigated soils and soil-like bodies are qualified as ecologically hazardous and extremely hazardous bodies.     

pH对酸性土壤中铝的溶出和铝离子形态分布的影响

ＰＨ对酸性土壤中铝的溶出和土壤溶液中铝离子形态分布的影响的研究结果表明,土壤中铝的溶出量随ＰＨ降低而增加,ＰＨ对不同土壤中铝的溶出的影响不同,三种土壤中铝的溶出量受ＰＨ影响的大小顺序是：红壤〉赤红壤〉砖红壤,说明不同类型土壤中铝的溶出对外来酸的敏感和程度不同。     

蓟运河故道消落带盐碱地土壤种子库特征

通过对蓟运河故道消落带的土壤种子进行萌发实验,确定了土壤种子库的物种组成、物种多样性指数和相似性指数,并对土壤种了库的物种特征进行了空间层次分析.结果表明:(1)蓟运河故道消落带土壤种子库共有16种植物,隶属于8科15属,其中藜科4种,菊科5种.3个区域土壤种子库物种相对多度和密度大小分布顺序为:洪淹区＞偶淹区＞常淹区.(2)不同区域种子库的Shannon—Wiener指数和Margalef丰富度指数随着水位的降低呈下降趋势,而生态优势度和Pielou均匀度指数有增大趋势.(3)种子库的空间分布特征明显,其中0--5 cm层种子数量最多,为623粒/m2;同时3个区域种子数量差异显著,洪淹区土壤种子库物种数量比偶淹区和常淹区分别多出253和353粒/,n2,而偶淹区土壤种子库物种数量与常淹区仅相差100粒/m2.     

不同类型水稻土微生物群落结构特征及其影响因素

选取基于我国土壤地理发生分类的不同类型土壤发育的四种水稻土,利用15N2气体示踪法测定生物固氮速率,采用实时荧光定量PCR(Real-time PCR)技术测定细菌丰度,通过16S rRNA基因高通量测序分析微生物群落组成和多样性.结果表明:变形菌门(Proteobacteria)、酸杆菌门(Acidobacteria...     

Microbial community changes during humification of 14C-labelled maize straw in heat-treated and native Orthic Luvisol

The microbial communities in agricultural soils are responsible for nutrient cycling and thus for maintaining soil fertility. However, there is still a considerable lack of knowledge on anthropogenic impacts on soils, their microflora, and the associated nutrient cycles. In this microcosm study, microorganisms involved in the conversion of crop residues were investigated by means of classical microbiological and molecular methods such as denaturing gradient gel electrophoresis (DGGE) of PCR (polymerase chain reaction) amplified 16S rRNA genes. ¹⁴C‐labelled maize straw was humified by the naturally occurring microflora in native and in ashed soils, from which organic carbon was removed by heating at 600°C. The humic acids synthesized in the microcosms served as indicators of the humification process and were analysed by ¹³C‐NMR spectroscopy. Ashed, autoclaved and native soil exhibited similar microbial and physicochemical dynamics after inoculation with a soil suspension. Bacterial counts and DGGE analyses showed that in the first few weeks a small number of rapidly growing r‐strategists were principally responsible for the conversion of maize straw. As the incubation continued, the bacterial diversity increased as well as the fungal biomass. ¹³C‐NMR spectroscopy of 26‐week old soil extracts revealed that structures typical of humic substances also evolved from the plant material.     

THE EFFECT OF TEMPERATURE ON THE MICROBIAL TRANSFORMATION OF [14C] GLUCOSE DURING INCUBATION IN SOIL

When two different soils were incubated after the addition of [¹⁴C] glucose in the dark at winter temperatures or at 5°C in the laboratory and then hydrolysed, radioactivity was detected in all seven common soil sugars except arabinose. In contrast, in incubations at 20°C, little radioactivity was found in the xylose. Examination of the microflora showed that the number of viable bacteria was one-tenth at the lower temperatures, whereas the numbers of yeasts, fungi, and actinomycetes were unaffected. Analysis of cultures of representative microbial isolates showed that none of the fungi or actinomycetes and only 3 per cent of the bacteria synthesized xylose, compared with 85 per cent of the yeasts. It is concluded that when these soils are incubated at low temperatures xylose is synthesized principally by yeasts.