Phylogeography and host range of Armillaria gallica in riparian forests of the northern Great Plains,USA

Root disease pathogens, including Armillaria, are a leading cause of growth loss and tree mortality in forest ecosystems of North America. Armillaria spp. have a wide host range and can cause significant reductions in tree growth that may lead to mortality. DNA sequence comparisons and phylogenetic studies have allowed a better understanding of Armillaria spp. taxonomic diversity. Genetic sequencing has facilitated the mapping of species distributions and host associations, providing insights into Armillaria ecology. These studies can help to inform forest management and are essential in the development of disease risk maps, leading to more effective management strategies for Armillaria root disease. Armillaria surveys were conducted on publicly owned lands in North Dakota, South Dakota, and Nebraska, U.S.A. Surveyed stands consisted of riparian forests ≥0.4 hectares in area. Armillaria was found at 78 of 101 sites. A total of 57 Armillaria isolates—associated with 12 host tree species—were used for DNA sequencing of the translation elongation factor‐1 alpha (tef1) gene. Armillaria gallica was the only species identified within the study sites. Results suggest that A. gallica is a common root pathogen of hardwood trees in riparian forests of the northern Great Plains with a wider host range and geographic distribution than previously recognized.     

Changes to relative stand composition after almost 50 years of Heterobasidion root disease in California true fir and pine forests

The Agaricomycete Heterobasidion annosum sensu lato (s.l.), a species complex of fungal pathogens, causes root and butt rot on conifers throughout the northern hemisphere, thereby shaping structure, composition, and evolution of vast and diverse forest ecosystems. We analyze forest change 48–49 years following Heterobasidion root disease emergence in 63 permanent plots first established in 1970–1972 and measured at least once every decade through 2020. We use this dataset to infer the long-term consequences of Heterobasidion root disease in a set of common forest types that reflect some of the most important hosts for this set of diseases in western North America. We contrasted three host–pathogen systems located within the Sierra Nevada, southern Cascades Mountain Range and the Modoc Plateau: (1) H. irregulare in host communities dominated by several Pinus (pine) species and Calocedrus decurrens (incense cedar) in Yosemite Valley, on the Sierra Nevada Range western slope; (2) H. irregulare in a largely single species (Pinus jeffreyi) host disease system on the eastern slopes of the Sierra Nevada and southern Cascades as well as the Modoc Plateau; and (3) H. occidentale—also on the western slope of the Sierra Nevada—in stands with a mixture of susceptible Abies (true fir) and a diversity of non-hosts for this Heterobasidion species. Approximately 50 years after disease emergence, relative basal area and stem density were significantly reduced within disease centres in all three pathosystems, but changes to forest composition and relative species dominance were determined by pre-disease host and non-host diversity. In the western-slope H. occidentale system, the disease increased the dominance of non-susceptible species, Pinus species and C. decurrens. In the multi-genus Yosemite pathosystem, H. irregulare did not significantly shift species dominance, and as expected, species shifts did not occur in the largely single-genus eastern-slope forests. In these widespread California forest ecosystems, two factors appeared to determine forest conditions almost 50 years after Heterobasidion root disease monitoring: the size of the disease centre and the initial diversity of non-hosts. Along with pathogen species, these factors appear to affect the local severity of disease as well as the degree of species shifts relative to initial plot compositions, reaffirming host susceptibility classifications associated with these forest types.     

Über eine neue Schizogregarinen-Krankheit der Gattung Mattesia Naville (Sporoz., Dischizae) des Zottigen Fichtenborkenkäfers,Dryocoetes autographus Ratz. (Coleopt,Scolytidae)

On a new Schizogregarian disease from Genus Mattesia Nav. of Dryocoetes autographus Ratz (Coleopt., Scolytidae) A new pathogen belonging to GenusMattesia Nav. was found in the Villous Spruce Bark Beetle,Dryocoetes autographus Ratz. near Berchtesgaden (Bavarian Alps) in 1976. Up to this time no species of this Genus has been found in the Order Coleoptera except ofMattesia grandis Mclaughlin, 1965, inAnthonomus grandis Boh. (Col., Curculionidae) and of certain pests of stored products (table 1). In consideration of scarce material the study of this new pathogen has not been completed.

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Durchgeführt mit Unterstützung der Alexander-von-Humboldt-Stiftung     

Pedicularis and Castilleja are natural hosts of Cronartium ribicola in North America: a first report

White pine blister rust disease, caused by the introduced pathogen Cronartium ribicola, has severely disrupted five‐needled pine ecosystems in North America. A 100‐year effort to manage this disease was predicated in part on the premise that the pathogen utilizes only species of Ribes (Grossulariaceae) as alternate hosts on this continent. The current study presents the first conclusive demonstration that some species in the family Orobanchaceae (Pedicularis racemosa and Castilleja miniata) are functioning as alternate hosts in a natural ecosystem of North America. This finding has implications for improving our understanding of epidemiology, pathogen adaptation and host–pathogen interactions within white pine blister rust.     

The process of decline of an endangered tree species,Pinus armandii Franch. var.amamiana (Koidz.) Hatusima, on the southern slope of Mt. Hasa-dake in Yaku-shima Island

The process of decline of an endangered tree species,Pinus armandii var.amamiana, was monitored on the southern slope of Mt. Hasa-dake in Yaku-shima Island from 1994 to 1998. There are 163 trees ofP. armandii var.amamiana over 1.3 m in height. They are distributed on steep ridges and rocks with a thin soil layer mostly consisting of friable granite. During the monitoring period, 21 trees ofP. armandii var.amamiana died and the mortality rate was 12.9%. Dead trees were categorized into three types: standing, uprooted and landslide. The uprooted- and landslide-typed dead trees were found only after a severe typhoon struck Yaku-shima Island. This suggests that the combination of fragile site conditions and severe typhoons play an important role in the process of decline ofP. armandii var.amamiana. The standing-typed dead trees were presumed to have been killed by pine wilt disease, accounting for 71.4% of the dead trees. However,Bursaphelenchus xylophilus, the cause of pine wilt disease, was not detected from any of the wood chips or branch samples from the standing-typed dead trees ofP. armandii var.amamiana. This might indicate that some factor(s) other than pine wilt disease could be responsible for the standing-typed death ofP. armandii var.amamiana in natural habitats. A part of this paper was presented at the 109th Meeting of the Japanese Forestry Society.     

Occurrence of Phytophthora cinnamomi in cork oak forests in Italy

An increasing decline and mortality of cork oak trees have been recently observed in central Italy and Sardinia Island. Following surveys conducted in three declining cork oak forests, a Phytophthora species was consistently isolated from soil samples collected from trees displaying different level of decline. Based on morphological features, growth rates at different temperatures and analysis of DNA sequences of the ITS region, all isolates were identified as Phytophthora cinnamomi Rands. This pathogen caused large brownish lesions on inoculated freshly cut branches of cork oak. It was re‐isolated from all infected tissues. These findings represent the first report of P. cinnamomi on cork oak trees in Italy.     

Occurrence of Diplodia corticola,including new oak host records,in Wisconsin,USA

In the United States, diseased oaks (Quercus species) exhibit tip blight, branch and stem cankers, and dieback often attributed to Diplodia species or related fungi. Emergence of Diplodia corticola as a pathogen of European oaks, and reports of this fungus in the eastern and western United States, prompted re‐examination of strains from Wisconsin. These had been obtained in the late 1990s and early 2000s and previously identified only as Diplodia species. Nuclear ribosomal ITS sequences were obtained from the Wisconsin strains and analysed with other sequences from GenBank. Wisconsin strains confirmed as D. corticola were from northern red oak (Q. rubra), black oak (Q. velutina), white oak (Q. alba) and bur oak (Q. macrocarpa). Other strains from oaks in Wisconsin were D. mutila and D. seriata. Wound inoculation of northern red, white and bur oak seedlings with D. corticola in a greenhouse resulted in shoot death and stem lesions, from which the pathogen was reisolated. We conclude that D. corticola has been present in the northcentral United States for at least two decades and report two previously unrecognized hosts of this pathogen: white oak and bur oak. The roles of D. corticola, related fungi and influences of other environmental factors in deterioration of oak health in North America merit additional investigation.     

Identification of Lophodermium seditiosum and L. pinastri in Swedish forest nurseries using species‐specific PCR primers from the ribosomal ITS region

Lophodermium seditiosum is a serious needle pathogen on pine, particularly in nurseries, and there is a need to detect the pathogen during its latent phase. The internal transcribed spacer (ITS) regions of the rDNA of L. seditiosum and L. pinastri were amplified with universal primers and sequenced. Sequence comparisons of the two species allowed the design of species‐specific primers for the ITS regions. The primers were between 18 and 24 bp long with a minimum of 3 bp differences between the species. These primer pairs did not give any amplification of DNA from any other of the examined fungal species or from healthy Pinus sylvestris needles. It was also possible to identify either L. seditiosum or L. pinastri in infected needles with and without signs of infection using these primer pairs. The method was found to be very useful for detection of latent infections of L. seditiosum in P. sylvestris needles in nurseries.     

Differentiating the two closely related species,Phellinus weirii and P. sulphurascens

Phellinus weirii s.l., an aggressive root rot pathogen, causes extensive wood losses and lowers the productivity of western red cedar (WRC, Thuja plicata), Douglas fir (Pseudotsuga menziesii) and other conifers. This fungus has been recognized as a cedar form (P. weirii s.s.) and a non‐cedar form (P. sulphurascens). Differentiating the two species is difficult because their fruiting bodies and cultural morphologies are very similar. However, differences in growth rate and colony morphology were observed when they were grown on malt extract agar with WRC feeder strips. In addition, different restriction fragment length polymorphism patterns were obtained using (i) the internal transcribed spacer (ITS) region cut with the restriction enzyme RsaI, and (ii) the partial large subunit ribosomal DNA region cut with AgeI and NciI. Furthermore, a new specific primer set was designed from the ITS region of P. weirii s.s. and was used to differentiate it from P. sulphurascens and other decay fungi that are frequently found in coniferous trees. These species‐specific primers will facilitate the detection of P. weirii in standing trees well before visible signs of infection are apparent.     

Pestalotiopsis biciliata,a new leaf pathogen of Eucalyptus spp. recorded in Italy

The present paper describes new symptoms on Eucalyptus spp. in Central Italy associated with the fungal pathogen Pestalotiopsis biciliata. This fungal species has been previously recorded in Italy on grape associated with fruit rot. Artificial inoculation trials on leaves confirmed the pathogenicity of the fungus to Eucalyptus camaldulensis. P. biciliata is included in the list of Pestalotiopsis spp. responsible for leaf disease on eucalypts worldwide.     

Brown root rot of trees caused by Phellinus noxius in the Ryukyu Islands,subtropical areas of Japan

The fungus Phellinus noxius has a broad host range and causes brown root rot in a variety of tree species of various ages, irrespective of their original health. The fungus is widely distributed in tropical countries of Southeast Asia, the Pacific Islands and Australia, Central America and Caribbean, and Africa. Since 1988, when brown root rot was first found on Ishigaki Island, Okinawa Prefecture, the disease has been reported on several islands in Okinawa and Kagoshima Prefectures, and it has been causing serious problems to shade, windbreak, ornamental and landscape trees in the Ryukyu Islands, located in the subtropical region of southern Japan. Here, we report on the current status of P. noxius‐caused brown root rot in the Ryukyu Islands, Japan, including symptoms, occurrence, dispersal, distribution and host tree species of the disease, pathogenicity and/or virulence of the pathogen, and disease management based on our surveys and previously published reports from Japan. Brown root rot has been confirmed in 53 tree species from 32 plant families at different sites on 10 of the 12 islands surveyed. Among the 53 tree species, 34 were first recorded in Japan as host plants of P. noxius. The disease occurs mainly in shade, ornamental and windbreak trees at sightseeing places, parks, roadsides, agricultural land such as sugar cane fields, and around residences or other places associated with human activities.     

Vegetation status on Nishi-jima Island (Ogasawara) before eradication of alien herbivore mammals: rapid expansion of an invasive alien tree, <Emphasis Type="Italic">Casuarina equisetifolia</Emphasis> (Casuarinaceae)

Insular ecosystems can be dramatically affected by alien species, and records of pre-eradication status are essential to evaluate the effects of eradicating alien species. Nishi-jima Island is a small island of the Ogasawara group on which the first program of complete eradication of alien herbivorous mammals (black rats and feral goats) will be conducted. After eradication, the government plans to conduct ecosystem restoration on the island. This paper reports the angiosperm flora and vegetation of Nishi-jima Island before eradication of the rats and goats, with the objective of aiding ecosystem management after the eradication. Our surveys indicate that vegetation cover by the alien tree, Casuarina equisetifolia has expanded compared with its distribution in a 1974 aerial photograph of the island. The predominant vegetation in 2006 was C. equisetifolia forests and Zoysia tenuifolia grasslands, with fragmented native tree vegetation. The flora of the island comprised 69 angiosperm species (50 indigenous species) of which 30% were endemic, far less than for the Ogasawara Islands as a whole (45%). However, several populations of endangered plants remain. To restore the native ecosystem on Nishi-jima, eradication of C. equisetifolia is important in addition to eradication of alien herbivorous mammals.     

Mechanisms and metabolomics of the host–pathogen interactions between Chestnut (Castanea species) and Chestnut blight (Cryphonectria parasitica)

Chestnut blight is a stem‐girdling disease of Castanea caused by the fungal pathogen Cryphonectria parasitica. Chestnut blight affects all Castanea species to some degree. In Asian species, chestnut blight is a commercially relevant disease which primarily affects nut production. In American and European species, chestnut blight has caused significant declines in wild populations and continues to negatively affect nut production in the European chestnut (C. sativa). Despite the profound effect of this disease in the Castanea genus, very little is known concerning the factors involved in the host–pathogen interaction between C. parasitica and its Castanea hosts. This review summarizes information on known mechanisms and metabolites involved in the host–pathogen interaction and contributes original information on the pathogen in relation to susceptible and putatively resistant genotypes with a view to furthering research that will promote a better understanding of this devastating disease and enable its control.     

Field ready: Development of a rapid LAMP-based colorimetric assay for the causal agent of white pine blister rust,Cronartium ribicola

The invasive fungal pathogen Cronartium ribicola causes white pine blister rust which is considered one of the most destructive diseases of five-needle (white) pines in North America. The disease has a life cycle that requires two hosts: white pines and Ribes spp., although other non-Ribes species, including Castilleja and Pedicularis, have been demonstrated as alternate hosts as well. Detection of this disease can be difficult because of the ephemeral nature of sporulation on pine hosts with ambiguity in other symptoms, and the alternate hosts for C. ribicola can also be an alternate host for other pine rust species. We used the previously published C. ribicola genome and species-specific real-time PCR assay to develop a field-ready loop-mediated isothermal amplification (LAMP) specific colorimetric assay for this pathogen. Specificity results across regionally identified pine rust pathogens showed the assay is highly specific to C. ribicola and can detect as little as 40 pg of pathogen DNA. We also developed a simple DNA extraction method that works with several tissue types (bark/phloem, aeciospores, and urediniospores/telia) to prepare the DNA samples for the LAMP assay. The DNA extraction and LAMP assay take ~70 min to complete and require a relatively small investment in equipment. This tool enables quick and efficient detection of white pine blister rust.     

Genetic diversity ofKandelia candel andBruguiera gymnorrhiza in the Southwest Islands, Japan

The genetic diversity of the mangrove tree speciesKandelia candel andBruguiera gymnorrhiza in the Southwest Islands of Japan was investigated. These islands are located at the periphery of the distribution area of the two species, and their populations are relatively small. Allozyme analyses of 17 loci inK. candel and 13 loci inB. gynmorrhiza revealed very little genetic variation in both species. At the species level, the proportion of polymorphic loci was 4.2%, the average effective number of alleles per locus was 1.02, and the average expected heterozygosity was 0.012 inK. candel. The corresponding figures forB. gymnorrhiza were 9.0%, 1.06 and 0.035, respectively. However, the coefficients of genetic differentiation among the populations were high (G _ST=0.165 forK. candel and 0.253 forB. gymnorrhiza). The genetic variation and habitat area ofK. candel on Amami Island is greater than on the islands Okinawa and Iriomote. The genetic variation and habitat area ofB. gymnorrhiza is greater on Iriomote Island than on the islands Okinawa and Amami. The level of genetic variation in both of the species might be related to their population sizes.     

Real‐time PCR assays for the detection of Heterobasidion irregulare,H. occidentale,H. annosum sensu stricto and the Heterobasidion annosum complex

A set of quantitative hierarchical real‐time PCR assays was developed for the detection of Heterobasidion irregulare, H. occidentale, H. annosum sensu stricto and of the entire Heterobasidion annosum complex. These assays enable specific and accurate detection and quantification of the target species from DNA extracted on airborne collected spores. Heterobasidion‐specific TaqMan? real‐time PCR detection assays were designed to function under homogeneous conditions so that they may be used in 96‐ or 384‐well plate format arrays for high‐throughput testing of large numbers of samples against multiple targets. Assays were validated for (i) specificity, (ii) sensitivity and (iii) repeatability. All assays were highly specific when evaluated against a panel of pure cultures of target and phylogenetically closely related species. Sensitivity, evaluated by assessing the limit of detection (with a threshold of 95% of positive samples), was found to be between one and a hundred ITS gene region copies or one conidia count equivalent. Precision or repeatability of each assay revealed a mean coefficient of variation of 5.9%. These molecular tools are now available for rapid and reliable monitoring of one of the most significant pathogen species complex of temperate northern coniferous forest around the world.     

Occurrence of brown root rot in Ocean Expo Park,Okinawa, Japan: Infection route and preventive control measures

Ocean Expo Park, established in 1976 on subtropical Okinawa Island, Japan, has approximately 8000 planted or naturally grown trees in an area of 77.2 ha. Windfall of these trees occurs mainly due to typhoons; wood chips made from the trunks and roots of windfall trees are commonly used as mulching material throughout the park areas, despite possible infection by pathogenic fungi such as Phellinus noxius, the pathogen causing brown root rot. P. noxius is distributed in tropical and subtropical areas worldwide and has a broad host range. The fungus can infect host plants with mycelia via root-to-root contact or with basidiospores. Here, we report the current status of tree damage caused by brown root rot in the park and infer the infection routes of P. noxius based on microsatellite markers. Among a total of 294 trees surveyed in the park, P. noxius was isolated from 13 trees of five species. P. noxius was observed more frequently on Ficus microcarpa than on other tree species. Ficus superba var. japonica was identified as a new host species, and Bombax ceiba was first recorded as a host plant of P. noxius in Japan. Among the 13 P. noxius isolates from the diseased trees, 2 isolates from adjacent diseased trees were considered to be of the same genet, while the other 11 isolates were different genets, indicating that infection by basidiospores occurred frequently among trees in the entire park, although spread via root systems also occurred between at least two adjacent trees. An identical genet was not detected at distant locations, which suggests that the disease does not spread via chips. However, mulching with chips can lead to wood decay due to decaying fungi other than P. noxius. Therefore, in accordance with the precautionary principle, the park currently prohibits the chipping and mulching of windfall or damaged trees and is considering disposal methods such as burning.     

Chrysoporthe puriensis causing canker and mortality in Pleroma mutabile in the Atlantic Forest,Brazil

Fungi of the Cryphonectriaceae family are globally known to be tree pathogens. In Brazil, several species of Chrysoporthe have been found causing stem and branch cankers in Pleroma (= Tibouchina) spp. Recently, Chrysoporthe puriensis was described as a new species causing stem and branch cankers in Pleroma granulosum, Pleroma candolleanum, and Pleroma heteromallum, all native species of the Melastomataceae family. During an investigation to collect isolates of the Cryphonectriaceae family in an important Brazilian biome, the Atlantic Forest, in Serra do Mar, structures typical of Chrysoporthe species were found in a different host, Pleroma mutabile. Fruiting bodies present in the bark of these trees were collected and isolated. The isolates were submitted on morphological characterization and phylogenetic analyses of the internal transcribed spacer (ITS) and β-tubulin gene regions using Maximum likelihood, Bayesian inference and Maximum parsimony methods. The isolates collected, for this study, were identified as C. puriensis. Pathogenicity tests on seedlings of Pleroma species and Eucalyptus clones revealed C. puriensis can infect and cause canker in these plant species as mortality. The results demonstrate the importance of delimiting the C. puriensis collection range to track its dissemination in other hosts. No host specificity was observed in the inoculation tests, suggesting this is an important finding, the pathogen causes diseases and mortality in several plants of the Atlantic Forest. Additionally, the pathogen can affect others hosts, such as Eucalyptus clones in commercial plantations.     

Calonectria metrosideri,a highly aggressive pathogen causing leaf blight,root rot,and wilt of Metrosideros spp. in Brazil

The genus Metrosideros includes several tree, shrub and vine species, native to the Pacific Islands. Seedlings from 25 seed lots of Metrosideros polymorpha and two seed lots of M. tremuloides with symptoms of root rot, stem girdling, wilting and round, purple leaf spots were observed in the Forestry Nursery at the Universidade Federal de Viçosa, Brazil. In the original disease site, seedling mortality reached up to 71% in M. polymorpha and 34% in M. tremuloides. Single conidial cultures obtained from infected leaf, root and stem samples of M. polymorpha were used to identify the fungal species. Morphological characters and DNA sequences of four loci, containing partial sequences of β‐tubulin (TUB2), histone H3 (HIS3), calmodulin (CAL) and the elongation factor (tef‐1α) genes of three isolates, indicated that they belong to a new species, described here as Calonectria metrosideri sp. nov. Potting medium infestation and inoculation of seedlings of M. polymorpha with an inoculum suspension at 1 × 10⁴ conidia ml^?1 induced typical symptoms of the disease (leaf spots, root rot and wilt), similar to those observed under natural conditions. Calonectria metrosideri was re‐isolated, which fulfilled Koch's postulates, and confirmed its status as a pathogen.