Mapping the global network of fisheries science collaboration

As socio‐environmental problems have proliferated over the past decades, one narrative which has captured the attention of policymakers and scientists has been the need for collaborative research that spans traditional boundaries. Collaboration, it is argued, is imperative for solving these problems. Understanding how collaboration is occurring in practice is important, however, and may help explain the idea space across a field. In an effort to make sense of the shape of fisheries science, here we construct a co‐authorship network of the field, from a data set comprising 73,240 scientific articles, drawn from 50 journals and published between 2000 and 2017. Using a combination of social network analysis and machine learning, the work first maps the global structure of scientific collaboration amongst fisheries scientists at the author, country and institutional levels. Second, it uncovers the hidden subgroups—here country clusters and communities of authors—within the network, detailing also the topical focus, publication outlets and relative impact of the largest fisheries science communities. We find that whilst the fisheries science network is becoming more geographically extensive, it is simultaneously becoming more intensive. The uncovered network exhibits characteristics suggestive of a thin style of collaboration, and groupings that are more regional than they are global. Although likely shaped by an array of overlapping micro‐ and macro‐level factors, the analysis reveals a number of political–economic patterns that merit reflection by both fisheries scientists and policymakers.     

Trait‐based ecology of fishes: A quantitative assessment of literature trends and knowledge gaps using topic modelling

Species traits are a new data currency to enhance our understanding of ecological patterns and processes. Trait‐based studies of fishes are numerous in comparison with other animal groups, reflecting the diversity of fish forms and functions they provide to aquatic ecosystems. We conduct a retrospective examination of literature to identify knowledge gaps and provide guidance for future research in trait‐based fish ecology. We apply an automated text mining and topic modelling to track the evolution of research topics within peer‐reviewed articles of functional traits in marine and freshwater fishes published over the past half century, explore the inter‐connections among those topics and identify emerging avenues for investigation. By mapping the topic landscape of the literature, 16 latent topics emerged that vary in their prevalence. Our results show a decline in the frequency of studies using reproductive traits to model and explore the way fish allocate energy for reproduction, and increase in studies reporting functional diversity metrics and utilizing the concept of multivariate functional space. Research focused on contributions of fish traits to ecosystem functioning also has increased in frequency. We revealed large gaps in information between growing and decreasing topics and that these gaps were derived from different types of traits being considered. We suggest that scientists break‐free from the traditions of their research field by targeting investigations that: (a) apply functional diversity metrics to a broader assortment of traits, (b) focus on traits influencing energy allocation to growth/reproduction and (c) integrate trophic‐web and behavioural studies with other topics.     

The potential impacts of ocean acidification: scaling from physiology to fisheries*

Views expressed on the potential impact of ocean acidification range from wholesale degradation of marine ecosystems through to no discernable impact with minimal consequences. Constraining this range of predictions is necessary for the development of informed policy and management. The direct biological impacts of acidification occur at the molecular and cellular level; however, it is the expression of these effects at the population and ecosystem level that is of societal concern. Here, we consider the potential impact of ocean acidification on fisheries with particular emphasis on approaches to scaling from physiological responses to population‐ and ecosystem‐level processes. In some instances, impacts of ocean acidification may lead to changes in the relative species composition at a given trophic level without affecting the overall productivity, whilst in other instances, ocean acidification may lead to a reduction in productivity at a given tropic level. Because of the scale at which ecological processes operate, modelling studies are required. Here, ocean acidification is situated within ongoing research into the ecological dynamics of perturbed systems, for which many models have already been developed. Whilst few existing models currently explicitly represent physiological processes sensitive to ocean acidification, some examples of how ocean acidification effects may be emulated within existing models are discussed. Answering the question of how acidification may impact fisheries requires the integration of knowledge across disciplines; this contribution aims to facilitate the inclusion of higher trophic level ecology into this ongoing debate and discussion.     

Inland fisheries of the Mayan Zone in Quintana Roo, Mexico: Using a combined approach to fishery assessment for data-sparse fisheries

In Southern Mexico and Central America, inland fisheries form part of the livelihood portfolio of an as-yet unknown number of rural communities. This paper reports on the first comprehensive study of such fisheries located in common property lands (ejidos) of the Mayan Zone in Quintana Roo, Mexico. Given the “data-sparse” nature of these fisheries, with a lack of data available on their current status and on participation levels, a fishery assessment approach was used which included methods from both the natural and social sciences, with a focus on survey methods applied to fishery users, water, fish and creel surveys. Moreover, local knowledge of community residents complemented scientific knowledge in a substantial part of the research. The results, from 48 fishing sites (four with sub-saline waters, the remainder freshwater) indicated (1) a resource base of multi-specific nature with a total of 18 bony fish species in the study area, (2) artisanal (small-scale) fisheries, with very basic technology (notably hand-lines) utilized primarily through barefoot fishing along the shores, or with the aid of rafts and canoes, (3) seasonal fishing, primarily during the dry season (February to May), due to greater accessibility of the sites in those periods, but also related to the end of work on major local livelihoods, (4) both indigenous (Mayan) and non-indigenous fishers, of ages ranging from teenage to senior adults, for most of whom the major occupation was slash-and-burn agriculture, and (5) a mainly male-oriented fishery, but with some women involved in five out of nine ejidos studied. While the key motivation of fishers was subsistence, the study found, for the first time in this form of fishery, that recreation was also a significant goal of many participants. In terms of methodology, the study demonstrated the importance of cross-validating the accuracy of information from informants interviewed in the type of social surveys used here. This combined assessment approach proved effective in providing new information on these previously under-studied fisheries, and may be useful in similar data-sparse situations elsewhere.     

The consequences of paradigm change and poorly validated science: The example of the value of mangroves to fisheries

Accuracy in representing, communicating and reporting science is critical to the translation of science into knowledge. Any lack of accuracy degrades the quality and reliability of consequent decisions. One common cause of inaccuracy is the use of superseded paradigmatic concepts with a lack of careful validation. This leads to evidentiary dissonance (an apparent abundance of evidence with little basis in actual reported scientific findings). We illustrate the nature and consequences of evidentiary dissonance using the example of estimates of the value of mangroves to fisheries, which are key motivators of decision‐making around land‐use activities in mangroves systems, mangrove restoration and disturbance offset initiatives. Causes include the use of inappropriate or inaccurate data and inadequate support for reasoning used to develop estimates of fisheries value. Evidentiary dissonance in linking estimates to scientific understanding has produced a citable and cited body of work with tenuous foundations in current ecological understanding, and a body of literature that is likely to lead to unrealistic expectations, misdirected and wasted resources, and perverse management outcomes.     

Using the same fish with different rules: A science‐based approach for improving management of recreational fisheries in a biodiversity hotspot of the Western South Atlantic

In this study we tested the hypothesis that Centropomus parallelus Poey moves between areas where fishing tourism is important, but the management rules for recreational fisheries are different. Fieldwork was conducted from May 2014 to June 2017 in an estuary located in the border between the states of São Paulo and Paraná, South‐Southeastern Brazil. Through a mark and recapture experiment, 2.000 individuals were tagged, of which 42 were recaptured. Among these, six fish were recaptured in Paraná, after being tagged in São Paulo, and a fish was recaptured in São Paulo, after being tagged in Paraná. These results support the hypothesis tested and indicate an uneven use of C. parallelus by anglers in both states. Thus, the use of the species and the recreational fisheries regulations need to be reviewed in the study area, taking into account the ability of C. parallelus to move across political boundaries and the importance of a fish‐oriented fisheries management regime.     

Comparing GLM,GLMM, and GEE modeling approaches for catch rates of bycatch species: A case study of blue shark fisheries in the South Atlantic

Modeling and understanding the catch rate dynamics of marine species is extremely important for fisheries management and conservation. For oceanic highly migratory species in particular, usually only fishery‐dependent data are available which have limitations in the assumption of independence and if often zero‐inflated and/or overdispersed. We tested different modeling approaches applied to the case study of blue shark in the South Atlantic, by using generalized linear models (GLMs), generalized linear mixed models (GLMMs), and generalized estimating equations (GEEs), as well as different error distributions to deal with the presence of zeros in the data. We used fractional polynomials to deal with non‐linearity in some of the explanatory variables. Operational (set level) data collected by onboard fishery observers, covering 762 longline sets (1,014,527 hooks) over a 9‐year period (2008–2016), were used. One of the most important variables affecting catch rates is leader material, with increasing catches when wire leaders are used. Spatial and seasonal variables are also important, with higher catch rates expected toward temperate southern waters and eastern longitudes, particularly between July and September. Environmental variables, especially SST, also affect catches. There were no major differences in the parameters estimated with GLMs, GLMMs, or GEEs; however, the use of GLMMs or GEEs should be more appropriate due to fishery dependence in the data. Comparing those two approaches, GLMMs seem to perform better in terms of goodness‐of‐fit and model validation.     

A proposal to define vulnerability of cetacean areas to human development: variables and analysis procedures applied to the Gulf of California

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A case study: Impacts of deviating from model research design to the commercial industry for split-pond aquaculture

A case study is presented to compare the results of design and management including circulation and dissolved oxygen management at a modified split-pond facility in west-central Alabama to the recommended design. Modifications included: the use of and a propeller pump instead of a slow-moving paddlewheel, lack of baffle in the waste cells, waste cell to fish cell ratio size, and improperly positioned aerators and DO sensing probes.Over a three year time period, the modified split-pond facility had net yields of hybrid catfish (Ictalurus punctatus ♀ x I. furcatus ♂) that reached up to 11,416 kg/ha/year; however, this includes several reports of fish kills. The present study experienced a minimum 15% reduction in net production compared to the recommended design values with a maximum potential loss of 54%. Ponds used an axial pump to transfer water between a 6:1 ratio of waste treatment area to fish grow-out area. Water flowed from the fish cell to the waste cell at a rate of 31.2 m³/min and from the waste cell back to the fish cell at a rate of 0.78 m³/min. Aerators used 5619–7492 kW-hr/ha which is more than the electrical use in traditional ponds (2238 kW-hr/ha). Even with the extra aeration, this study had at least one fish cell and one waste cell drop below a dissolved oxygen concentration of 2.5 mg/L. These specific modifications may lead to poor survival and production in split-pond aquaculture and are discussed with best management practices of the recommended design.