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1.
Defining response groups within N-related microbial communities is needed to predict land management effect on soil N dynamics, but information on such response groups and associated environmental drivers is scarce. We investigated the abundance and major populations of ammonia-oxidizing archaea (AOA) and bacteria (AOB), and nirS- and nirK-harboring denitrifiers under different grazing managements in Tibetan alpine meadow soils. Grazing increased AOB and AOA abundances up to 42 fold and 3.7 fold, respectively, and increased the percentage of AOB within total ammonia oxidizers from 3.1% to 10.8%. The abundance of nirK-like denitrifiers increased with grazing intensity, while the abundance of nirS-like denitrifiers tended to decrease. However, sub-groups within each of these broad groups of (de)nitrifiers responded differently to grazing. Soil nitrate was the main driver of the abundance of denitrifier sub-groups (nirK or nirS) positively responding to grazing, while soil moisture and carbon concentration were the main drivers of the abundance of denitrifier sub-groups negatively responding to grazing. AOB and nirK-harboring denitrifiers thus generally responded more positively to grazing than AOA and nirS-harboring denitrifiers, but significant functional diversity existed within each group. Our approach demonstrates the usefulness of the concept of response groups to better characterize and understand (de)nitrifier response to grazing.  相似文献   

2.
Denitrification is an important part of the nitrogen cycle in the environment, and diverse bacteria, archaea, and fungi are known to have denitrifying ability. Rice paddy field soils have been known to have strong denitrifying activity, but the microbes responsible for denitrification in rice paddy field soils are not well known. Present study analyzed the diversity and quantity of the nitrite reductase genes (nirS and nirK) in a rice paddy field soil, sampled four times in one rice-growing season. Clone library analyses suggested that the denitrifier community composition varied over sampling time. Although many clones were distantly related to the known NirS or NirK, some clones were related to the NirS from Burkholderiales and Rhodocyclales bacteria, and some were related to the NirK from Rhizobiales bacteria. These denitrifiers may play an important role in denitrification in the rice paddy field soil. The quantitative PCR results showed that nirK was more abundant than nirS in all soil samples, but the nirK/nirS ratio decreased after water logging. These results suggest that both diversity and quantity changed over time in the rice paddy field soil, in response to the soil condition.  相似文献   

3.
The process of denitrification has been studied for decades, with current evidence suggesting that an ecosystem's ability to produce and emit N2O is controlled both by transient ‘proximal’ regulators (e.g. temperature, moisture, N availability) as well as distal regulators (e.g. soil type, microbial functional diversity, geography). In this study we use New Zealand soils as a model system to test the impact of distal regulators (i.e. geography) on microbial communities and their N2O emission potential. Using gas chromatography, soil chemical analyses, 16S amplicon sequencing, terminal restriction fragment length polymorphism (T-RFLP) and quantitative PCR (qPCR) on three denitrifier functional genes (nirS, nirK and nosZ), we assessed the factors linked to N2O emissions across a latitudinal gradient. Results show that soil drainage class, soil texture class, and latitude were powerful regulators of both emissions and emission end products (N2 vs. N2O). Mixed models demonstrate that a few variables (including latitude, texture class, drainage class and denitrifier community data [abundance and diversity] amongst others) were enough to predict both the amount and type of gas emitted. In addition we show that microbial community composition (based on 16S rRNA gene sequencing) can also be used to predict both the gas species and quantity emitted.  相似文献   

4.
5.
Denitrification is one of the major processes causing nitrogen loss from arable soils.This study aimed to investigate the responses of nir S-type denitrifier communities to different chronic fertilization regimes across the black soil region of Northeast China.Soil samples were collected from sites located in the north(NB),middle(MB),and south(SB)of the black soil region of Northeast China,each with four chronic fertilization regimes:no fertilizer(No F),chemical fertilizer(CF),manure(M),and chemical fertilizer plus manure(CFM).Methods of quantitative polymerase chain reaction(q PCR)and Illumina Mi Seq sequencing were applied to assess the abundance and composition of denitrifier communities by targeting the nir S gene.The results showed that the M and CFM regimes significantly increased the abundances of nir S-type denitrifiers compared with No F at the three locations.The majority of nir S sequences were grouped as unclassified denitrifiers,and the different fertilizers induced little variation in the relative abundance of known nir S-type denitrifier taxa.Over 90%of the sequences were shared among the four fertilization regimes at each location,but none of the abundant operational taxonomic units(OTUs)were shared among the three locations.Principal coordinate analysis(PCo A)revealed that the communities of nir S-type denitrifier were separated into three groups that corresponded with their locations.Although similar fertilization regimes did not induce consistent changes in the nir S-type denitrifier communities,soil p H and NO-3-N content simultaneously and significantly influenced the structure of nir S-type denitrifier communities at the three locations.Our results highlight that geographical separation rather than chronic fertilization was the dominant factor determining the nir S-type denitrifier community structures,and similar chronic fertilization regimes did not induce consistent shifts of nir S-type denitrifier communities in the black soils.  相似文献   

6.
Soils are the major source of the greenhouse gas nitrous oxide (N2O) to our atmosphere. A thorough understanding of terrestrial N2O production is therefore essential. N2O can be produced by nitrifiers, denitrifiers, and by nitrifiers paradoxically denitrifying. The latter pathway, though well-known in pure culture, has only recently been demonstrated in soils. Moreover, nitrifier denitrification appeared to be much less important than classical nitrate-driven denitrification. Here we studied a poor sandy soil, and show that when moisture conditions are sub-optimal for denitrification, nitrifier denitrification can be a major contributor to N2O emission from this soil. We conclude that the relative importance of classical and nitrifier denitrification in N2O emitted from soil is a function of the soil moisture content, and likely of other environmental conditions as well. Accordingly, we suggest that nitrifier denitrification should be routinely considered as a major source of N2O from soil.  相似文献   

7.
Soil moisture and nitrogen (N) are two important factors influencing N2O emissions and the growth of microorganisms. Here, we carried out a microcosm experiment to evaluate effects of soil moisture level and N fertilizer type on N2O emissions and abundances and composition of associated microbial communities in the two typical arable soils. The abundances and community composition of functional microbes involved in nitrification and denitrification were determined via quantitative PCR (qPCR) and terminal restriction length fragment polymorphism (T-RFLP), respectively. Results showed that N2O production was higher at 90% water-filled pore (WFPS) than at 50% WFPS. The N2O emissions in the two soils amended with ammonium were higher than those amended with nitrate, especially at relatively high moisture level. In both soils, increased soil moisture stimulated the growth of ammonia-oxidizing bacteria (AOB) and nitrite reducer (nirK). Ammonium fertilizer treatment increased the population size of AOB and nirK genes in the alluvial soil, while reduced the abundances of ammonia-oxidizing archaea (AOA) and denitrifiers (nirK and nosZ) in the red soil. Nitrate addition had a negative effect on AOA abundance in the red soil. Total N2O emissions were positively correlated to AOB abundance, but not to other functional genes in the two soils. Changed soil moisture significantly affected AOA rather than AOB community composition in both soils. The way and extent of N fertilizers impacted on nitrifier and denitrifier community composition varied with N form and soil type. These results indicate that N2O emissions and the succession of nitrifying and denitrifying communities are selectively affected by soil moisture and N fertilizer form in the two contrasting types of soil.  相似文献   

8.
Emissions of nitrous oxide (N2O) from an Irish arable soil were simulated using the DeNitrification–DeComposition (DNDC) model. The soil chosen was a free-draining sandy loam typical of the majority of cereal growing land in Ireland, and one that has been previously used to test and validate DNDC-model. DeNitrification–DeComposition model was considered suitable to estimate N2O fluxes from Irish arable soils however, underestimated the flux by 24%. The objectives of this study were to estimate future N2O fluxes from a spring barley field under conventional (moulboard plowing) and reduced (chisel plowing) tillage and different N-fertilzer application rates. Three climate scenarios, a baseline of measured climatic data from the weather station at Kilkenny and a high- and low-temperature-sensitive scenarios predicted by the Hadley Global Climate Model (HadCM4) based on the AB1 emission scenario of the Intergovernment Panel on Climate Change (IPCC) were investigated. For conventional tillage under all scenarios, three peaks of N2O emissions were predicted; an early spring peak coinciding mostly with soil plowing, a mid/late spring peak coinciding with fertilizer application and an early autumn peak coinciding with residue incorporation and onset of autumn rainfall. Under reduced tillage, due to the less amount of soil disturbance, the early spring peak was not predicted. In all cases, the total amount of N2O emitted in the late spring peak due to fertilizer application was less than the sum of the other peaks. Under climate change, using the high-temperature-increase scenario, DNDC predicted an increase in N2O emissions from both conventional and reduced tillage, ranging from 58% to 88% depending upon N application rate. In contrast, annual fluxes of N2O either decreased or increased slightly in the low temperature increase scenario relative to N application (−26 to +16%). Outputs from the model indicate that elevated temperature and precipitation increase N mineralization and total denitrification leading to greater fluxes of N2O. Annual uncertainties due to the use of two different future climate scenarios were significantly high, ranging from 74% to 95% and from 71% to 90% for the conventional and reduced tillage.  相似文献   

9.
10.
Mixed responses of soil nitrous oxide (N2O) fluxes to reduced tillage/no-till are widely reported across soil types and regions. In a field experiment on a Danish sandy loam soil we compared N2O emissions during winter barley growth following five years of direct drilling (DD), reduced tillage (RT) or conventional tillage (CT). Each of these tillage treatments further varied in respect to whether the resulting plot crop residues were retained (+Res) or removed (−Res). Sampling took place from autumn 2007 to the end of spring 2008. Overall N2O emissions were 27 and 26% lower in DD and RT, respectively, relative to N2O emissions from CT plots (P < 0.05). We observed that in residue removal scenarios N2O emissions were similar for all tillage treatments, but in residue retention scenarios N2O emissions were significantly higher in CT than in either DD or RT (P < 0.05). Irrespective of residue management, N2O emissions from DD and RT plots never exceeded emissions from CT plots. Retention of residue was estimated to reduce emissions from DD plots by 39% and in RT plots by 9%, but to increase N2O emissions from the CT plots by 35%. Relative soil gas diffusivity (Rdiff), soil NO3-N, soil temperature, tillage and residue were important driving factors for N2O emission (P < 0.05). A multiple linear regression model using Rdiff to represent the water factor explained N2O emissions better than a water-filled pore space (WFPS) based model, suggesting a need for review of the current use of WFPS in N2O prediction models. We conclude that on light textured soils, no-till has the potential for reducing N2O emissions when crop residues are returned to the soil.  相似文献   

11.
Bacterial-feeding nematodes represent an important driver of the soil microbial activity and diversity. This study aimed at characterizing the impact of nematode grazing on a model functional bacterial guild involved in N-cycling, the denitrifiers. Bacterial-feeding nematodes (Cephalobus pseudoparvus) were inoculated into soil microcosms whose indigenous nematofauna had previously been removed. The size, genetic structure and activity of the soil denitrifier community were characterized 15 and 45 days after nematodes inoculation using quantitative PCR of the nirK, nirS and nosZ denitrification genes, fingerprinting of the nirK and nirS genes and denitrification enzyme activity measurements, respectively. A significant impact of C. pseudoparvus was observed on genetic structure of the nirK community, mainly due to shifts in the relative abundance of the dominant populations, but not on the nirS community. The grazing pressure also tended to decrease the density of all denitrification genes as well as that of 16S rRNA genes. Despite being non-significant, the extent of this decline in gene copy numbers ranged between 60 and 80% of the control microcosm genes densities. Finally, compared to non-inoculated microcosms, denitrification activity significantly decreased by 8% in response to the nematodes inoculation. The herewith data showed that predation by a single species of bacterial-feeding nematode can affect the soil denitrifier community.  相似文献   

12.
Soil N fertilization stimulates the activity of the soil bacterial species specialized in performing the different steps of the denitrification processes. Different responses of these bacterial denitrifiers to soil N management could alter the efficiency of reduction of the greenhouse gas N2O into N2 gas in cultivated fields. We used next generation sequencing to show how raising the soil N fertility of Canadian canola fields differentially modifies the diversity and composition of nitrite reductase (nirK and nirS) and nitrous oxide reductase (nosZ) gene-carrying denitrifying bacterial communities, based on a randomized complete blocks field experiment. Raising soil N levels increased up to 60% the ratio of the nirK to nirS genes, the two nitrite reductase coding genes, in the Brown soil and up to 300% in the Black soil, but this ratio was unaffected in the Dark Brown soil. Raising soil N levels also increased the diversity of the bacteria carrying the nitrite reductase gene nirK (Simpson index, P = 0.0417 and Shannon index, 0.0181), and changed the proportions of the six dominant phyla hosting nirK, nirS, and nosZ gene-carrying bacteria. The level of soil copper (Cu) and the abundance of nirK gene, which codes for a Cu-dependent nitrite reductase, were positively related in the Brown (P = 0.0060, R2 = 0.48) and Dark Brown (0.0199, R2 = 0.59) soils, but not in the Black soil. The level of total diversity of the denitrifying communities tended to remain constant as N fertilization induced shifts in the composition of these denitrifying communities. Together, our results indicate that higher N fertilizer rate increases the potential risk of nitrous oxide (N2O) emission from canola fields by promoting the proliferation of the mostly adaptive N2O-producing over the less adaptive N2O-reducing bacterial community.  相似文献   

13.
Since the development of effective N2O mitigation options is a key challenge for future agricultural practice, we studied the interactive effect of tillage systems on fertilizer-derived N2O emissions and the abundance of microbial communities involved in N2O production and reduction. Soil samples from 0–10 cm and 10–20 cm depth of reduced tillage and ploughed plots were incubated with dairy slurry (SL) and manure compost (MC) in comparison with calcium ammonium nitrate (CAN) and an unfertilized control (ZERO) for 42 days. N2O and CO2 fluxes, ammonium, nitrate, dissolved organic C, and functional gene abundances (16S rRNA gene, nirK, nirS, nosZ, bacterial and archaeal amoA) were regularly monitored. Averaged across all soil samples, N2O emissions decreased in the order CAN and SL (CAN?=?748.8?±?206.3, SL?=?489.4?±?107.2 μg kg?1) followed by MC (284.2?±?67.3 μg kg?1) and ZERO (29.1?±?5.9 μg kg?1). Highest cumulative N2O emissions were found in 10–20 cm of the reduced tilled soil in CAN and SL. N2O fluxes were assigned to ammonium as source in CAN and SL and correlated positively to bacterial amoA abundances. Additionally, nosZ abundances correlated negatively to N2O fluxes in the organic fertilizer treatments. Soils showed a gradient in soil organic C, 16S rRNA, nirK, and nosZ with greater amounts in the 0–10 than 10–20 cm layer. Abundances of bacterial and archaeal amoA were higher in reduced tilled soil compared to ploughed soils. The study highlights that tillage system induced biophysicochemical stratification impacts net N2O emissions within the soil profile according to N and C species added during fertilization.  相似文献   

14.
The contribution of nitrifiers (ammonia-oxidizing bacteria (AOB)) and denitrifiers to nitrous oxide (N2O) emission from arctic soils remains inconclusive. Based on preliminary experiments, we hypothesized that AOB are the primary producers of N2O in a high arctic lowland ecosystem on Devon Island, Nunavut, Canada. In part 1 of the study, flux chambers were installed in a catena to determine in situ fluxes of gases (N2O and carbon dioxide (CO2)) from 16 June to 13 July 2004. Although fluxes were low, N2O production occurred in the wettest area of the landscape when ammonium levels were high. As ammonium, but not nitrate, levels declined in the wet sedge meadow, N2O emissions correspondingly decreased. In part 2, the contribution of nitrification and denitrification to N2O production was assessed by Acetylene Inhibition Assay and 15N isotopically enriched incubations. Ammonium fertilization stimulated N2O emissions to a greater extent than nitrate, and acetylene had a greater impact on N2O emissions in ammonium-fertilized soils than in nitrate-amended soils. Stable isotope analysis indicated that at 50-55% water filled pore space, nitrification was the dominant (>80%) N2O emitting process. In part 3, molecular analyses of the two N2O producing groups indicated the both nitrifiers and denitrifiers did not differ between landforms. Our results suggest nitrifier denitrification is the dominant process occurring in these arctic soils and that the role of denitrifiers in N2O release from arctic soils needs to be re-evaluated.  相似文献   

15.
《Applied soil ecology》2011,48(3):221-225
The impact of tillage practices on microbial N transformations in Vertisols is poorly understood and data from long-term field experiments are scarce, particularly in semiarid regions. We evaluated the effects of traditional tillage (TT) vs no-tillage (NT) on denitrification in a long-term field experiment under a rainfed crop rotation system (cereal-sunflower-legumes) on a Vertisol (SW Spain). In general, the abundance of denitrifiers and the respective potential denitrification rates was higher under NT compared to TT during the vegetation period, but not after harvesting. However differences in denitrifier numbers were within the same order of magnitude (0.5–3 × 107 copies g soil dw). The abundance of nitrite reducers and N2O reducers was relatively similar. In addition, N2O/N2 ratios between 1 and 2 were found for both treatments. These results emphasize that NT has a limited impact on denitrification in Vertisols under fertilizer regime and legume-crop rotation and thus losses of N2O are expected to be comparable to those of traditional tillage systems.  相似文献   

16.
Agricultural management significantly affects methane (CH4) and nitrous oxide (N2O) emissions from paddy fields. However, little is known about the underlying microbiological mechanism. Field experiment was conducted to investigate the effect of the water regime and straw incorporation on CH4 and N2O emissions and soil properties. Quantitative PCR was applied to measure the abundance of soil methanogens, methane-oxidising bacteria, nitrifiers, and denitrifiers according to DNA and mRNA expression levels of microbial genes, including mcrA, pmoA, amoA, and nirK/nirS/nosZ. Field trials showed that the CH4 and N2O flux rates were negatively correlated with each other, and N2O emissions were far lower than CH4 emissions. Drainage and straw incorporation affected functional gene abundance through altered soil environment. The present (DNA-level) gene abundances of amoA, nosZ, and mcrA were higher with straw incorporation than those without straw incorporation, and they were positively correlated with high concentrations of soil exchangeable NH4+ and dissolved organic carbon. The active (mRNA-level) gene abundance of mcrA was lower in the drainage treatment than in continuous flooding, which was negatively correlated with soil redox potential (Eh). The CH4 flux rate was significantly and positively correlated with active mcrA abundance but negatively correlated with Eh. The N2O flux rate was significantly and positively correlated with present and active nirS abundance and positively correlated with soil Eh. Thus, we demonstrated that active gene abundance, such as of mcrA for CH4 and nirS for N2O, reflects the contradictory relationship between CH4 and N2O emissions regulated by soil Eh in acidic paddy soils.  相似文献   

17.
 N2O emission rates from a sandy loam soil were measured in a field experiment with 2 years of perennial forage crops (ryegrass, ryegrass-red clover, red clover) and 1 year of spring barley cultivation. Spring barley was sown after the incorporation of the forage crop residues. All spring barley plots received 40 kg N ha–1 N fertiliser. Ryegrass, ryegrass-red clover and red clover plots were fertilised with 350 kg N ha–1, 175 kg N ha–1 and 0 kg N ha–1, respectively. From June 1994 to February 1997, N2O fluxes were continuously estimated using very large, closed soil cover boxes (5.76 m2). In order to compare the growing crops, the 33 months of investigation were separated into three vegetation periods (March–September) and three winter periods (October–February). All agronomic treatments (fertilisation, harvest and tillage) were carried out during the vegetation period. Large temporal changes were found in the N2O emission rates. The data were approximately log-normally distributed. Forty-seven percent of the annual N2O losses were observed to occur during winter, and mainly resulted from N2O production during daily thawing and freezing cycles. No relationship was found between the N2O emissions during the winter and the vegetation period. During the vegetation period, N2O losses and yields were significantly different between the three forage crops. The unfertilised clover plot produced the highest yields and the lowest N2O losses on this soil compared to the highly fertilised ryegrass plot. Total N2O losses from soil under spring barley were higher than those from soil under the forage crops; this was mainly a consequence of N2O emissions after the incorporation of the forage crop residues. Received: 31 October 1997  相似文献   

18.
The aim of this study was to investigate the effect of crop residues from winter oilseed rape on N2O emissions from a loamy soil and to determine the effect of different tillage practices on N2O fluxes. We therefore conducted a field experiment in which crop residues of winter oilseed rape (Brassica napus L., OSR) were replaced with 15N labelled OSR residues. Nitrous oxide (N2O) emissions and 15N abundance in the N2O were determined for a period of 11 months after harvest of OSR and in the succeeding crop winter wheat (Triticum aestivum L.) cultivated on a Haplic Luvisol in South Germany. Measurements were carried out with the closed chamber method in a treatment with conventional tillage (CT) and in a treatment with reduced soil tillage (RT). In both tillage treatments we also determined N2O fluxes in control plots where we completely removed the crop residues. High N2O fluxes occurred in a short period just after OSR residue replacement in fall and after N‐fertilization to winter wheat in the following spring. Although N2O emissions differed for distinct treatments and sub‐periods, cumulative N2O emissions over the whole investigation period (299 days) ranged between 1.7 kg and 2.4 kg N2O‐N ha?1 with no significant treatment effects. More than half of the cumulative emissions occurred during the first eight weeks after OSR replacement, highlighting the importance of this post‐harvest period for annual N2O budgets of OSR. The contribution of residue N to the N2O emission was low and explained by the high C/N‐ratio fostering immobilization of mineral N. In total only 0.03% of the N2O‐N emitted in the conventional tillage treatment and 0.06% in the reduced tillage treatment stemmed directly from the crop residues. The 15N recovery in the treatments with crop residues was 62.8% (CT) and 75.1% (RT) with more than 97% of the recovered 15N in the top soil. Despite our measurements did not cover an entire year, the low contribution of the OSR residues to the direct N2O emissions shows, that the current IPCC tier 1 approach, which assumes an EF of 1%, strongly overestimated direct emissions from OSR crop residues. Furthermore, we could not observe any relationship between tillage and crop residues on N2O emission, only during the winter period were N2O emissions from reduced tillage significantly higher compared to conventional tillage. Annual N2O emission from RT and CT did not differ.  相似文献   

19.
Winter forage grazing systems in New Zealand cause compaction of soil by grazing animals, especially when the soil is wet. However, there is little information on the effects of animal trampling on denitrifiers in soil, despite their importance for N2O production. Here, we report a field study of the abundance of the denitrifying genes nirS, nirK, and nosZ and N2O emissions following the application of dairy cow urine in a free‐draining stony soil. Importantly, we found that simulated animal trampling altered some of the denitrifying microbial communities, thus leading to increased N2O emissions. Over the 111 day measurement period, the abundance of nitrite (NO2?)‐reducing nirS gene copy numbers increased significantly by 87% in the trampled soil with urine (P < 0.01) and increased by 40% in the trampled soil without urine (P < 0.05), but the nirS gene abundance did not change significantly in the nontrampled soil. The abundance of NO2? reducing nirK gene copy numbers was not affected by trampling, but increased significantly following urine application. The abundance of N2O‐reducing nosZ clade I and nosZ clade II gene copy numbers increased significantly in the trampled soil, but did not change significantly in the nontrampled soil. N2O emissions from the trampled soil were about twice that from the nontrampled soil without urine (1.20 and 0.62 kg N2O‐N per ha, respectively) and about eight times greater (6.24 kg N2O‐N per ha) than from nontrampled soil (0.80 kg N2O‐N per ha) when urine was applied. These results strongly suggest that animal trampling during winter forage grazing can have a major impact on denitrifying communities in soil, which in turn stimulate greater denitrification with increased N2O emissions.  相似文献   

20.
丛枝菌根真菌调控土壤氧化亚氮排放的机制   总被引:2,自引:1,他引:1  
氮素是陆地生态系统初级生产力的主要限制因子,自Haber-Bosch反应以来,氮肥的生产和施用极大地提高了粮食产量.然而过量施用氮肥导致氮肥利用率低,并造成了严重的环境污染,包括氮沉降、硝态氮淋洗以及N2O排放等.微生物直接参与土壤氮素循环,固氮微生物、氨氧化和反硝化微生物分别在土壤固氮、铵态氮转化和硝态氮转化过程中起...  相似文献   

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