Callus induction and in vitro plant regeneration of rice (Oryza sativa L.) under various conditions

The objective of the present study was to develop an effective protocol for optimum callus induction and complete plant regeneration for four varieties of rice (Oryza sativa L.) i.e., Super Basmati, Basmati-370, Basmati-371 and Fakhre Malakand. Calli were induced from mature seed scutelum. The Murashige and Skoog (MS) and Chu's N6 media containing hormone 2, 4-D (2, 4-Dichlorophenoxy acetic acid) in different concentrations were used for callus induction. Fakhre Malakand produced maximum calli on N6 media containing 3 mg L(-1) 2,4-D. while other three varieties showed maximum callus induction on N6 media containing 2.5 mg L(-1) 2,4-D. N6 media was found better than MS media for callus induction. For complete plant regeneration the calli of two varieties i.e., Basmati-370 and Basmati-371 were plated on N6 media containing different concentrations of NAA (1-Naphthalene acetic acid) and BAP (6-benzyl aminopurine). The maximum regeneration frequency (%) was observed on N6 media containing NAA 1 mg L(-1) and BAP 2.5 mg L(-1). It took 27-30 days for the callus to regenerate into a complete plant. Basmati-370 produced 4-7 plantlets per callus whereas Basmati-371 produced 4-8 plantlets per callus with regeneration frequencies of 61 and 69%, respectively.     

Studies on culture ability of Glabrous rice(Oryza sativa L.)

Glabrous rice is characterized by its smoothand hairness leaves and husks,mainly dis- tributed in America,Africa,and Yunnan andGuizhou provinces of China.It has the charac- teristics of strong stem,high endurance tolodging,good compatibility,high grain quali-ty,and high yield,and is propitious to themachanized harvest.The Glabrous rice hasbeen proved to be plant population of superior- ity,which could be used as germplasm re-     

Glutelin is partially degraded in globulin-less mutants of rice (Oryza sativa L.)

Multigenic glutelins and monogenic globulin are major storage proteins accumulating in vacuole-derived protein body (PB-II) of rice (Oryza sativa L.) seeds. Because their interplay in PB-II formation was scarcely known, the effect of globulin-less mutation on glutelin accumulation was investigated. In globulin-less mutants, no phenotypic defect was found in seed and plant growth, while PB-II was deformed and apparent glutelin composition was changed, producing new glutelin α polypeptides X1–X5. 2D-PAGE of different combinations of globulin-less and glutelin subunit mutations suggested that the X1/X2, X3, and X4/X5 were derived from glutelin GluB1/GluB2/GluB4, GluA3, and GluA1/GluA2 subunits, respectively. Western blot with glutelin GluB4 subunit-specific and its variable region discriminable antibodies indicated at least in part the new spots X1/X2 are partially degraded products of GluB4 α polypeptides by the removal of 2–39 residues from C-terminus. Time course experiments with maturing seeds indicated the partial degradation of GluB4 occurred earlier (from 7 days after flowering) and higher than that of GluA1/GluA2. Considering the above results together with the fact that globulin accumulates at the periphery of PB-II and its absence produces deformed PB-II, globulin protects glutelins from proteinase digestion and thereby facilitates stable glutelin accumulation.     

Effect of rice establishment methods on weedy rice (Oryza sativa L.) infestation and grain yield of cultivated rice (O. sativa L.) in Sri Lanka

Weedy rice is a great threat to rice production in Sri Lanka. Selective herbicides to manage weedy rice in conventional rice cultivars are not available in Sri Lanka. In the absence of appropriate chemical control measures, cultural approaches may help to achieve effective control of weedy rice. A study was conducted in two consecutive seasons in farmers' fields at three sites (Atalla, Samanthurai, and Girithale villages) in Sri Lanka to evaluate the effect of different establishment methods (farmers' practice, random broadcast, row seeding, seedling broadcast, and transplanted rice) on weedy rice infestation and rice yield. The farmers' practice had a higher number of weedy rice panicles (60–80 m⁻²) than the random broadcast (39–48 panicles m⁻²), seedling broadcast (3–15 panicles m⁻²), and transplanted rice (1.3–3.0 panicles m⁻²) methods. The use of clean rice seeds in the random broadcast method reduced weedy rice seed production by 29–41% compared with the farmers' practice (0.6–2.0 t ha⁻¹). Compared with the farmers' practice, the seedling broadcast method reduced weedy rice seed production by 71–87% and transplanted rice by 95–98%; and increased rice yield by 27–49% (7.5–9.1 t ha⁻¹). At all three sites, the farmers' practice resulted in the lowest grain yield (5.1–6.7 t ha⁻¹). Compared with the farmers' practice, the random broadcast and row seeding methods increased rice yield by up to 21% and 31%, respectively. The findings suggest that the use of clean rice seeds, the use of a row-seeded crop, and the adoption of different rice planting methods may help to suppress the spread of weedy rice.     

Genetic analysis of transparency and chalkiness area at different filling stages of rice (Oryza sativa L.)

Seven cytoplasmic male sterile lines and five restorer lines of indica rice (Oryza sativa L.) were used to analyze genetic effects on transparency and chalkiness area at four filling stages. A developmental genetic model for quantitative traits of triploid endosperm in cereal crops were used for the data analysis. The unconditional analysis showed that the accumulated genetic effects of genes expressed from the initial time (at flowering and fertilization) to the filling time t were all significant for transparency and chalkiness area. These results indicated that the genetic effects of the triploid endosperm, cytoplasmic and diploid maternal plant were all of importance for both traits at various filling stages, especially for maternal additive and dominance effects on transparency. The relatively high endosperm and maternal additive effects on transparency and chalkiness area indicated that the two traits could be improved by selection in early generations. From the conditional analysis for the net genetic effects of genes expressed during time t−1 to time t, new expression of genes in endosperm, cytoplasm and maternal plant for transparency and chalkiness area was found at most of the filling stages, especially from 8 to 14 days after flowering for transparency and from 1 to 14 days after flowering for chalkiness area. Predicted genetic effects and conditional genetic effects at different filling stages showed that transparency and chalkiness area of offspring could be improved by using some parents, such as Zuo 5, because of their better endosperm additive and cytoplasmic effects.     

Adaptation of rice (Oryza sativa L.) genotypes in the rainfed lowlands of Lao PDR

Genotype by environment (G×E) interactions for grain yield were investigated in 14 rice genotypes across eight rainfed lowland field environments in Lao PDR, in order to identify stable adapted cultivars for improved farmer livelihood and food security. G×E accounted for 20.3% of the total variance, with three vectors from ordination analysis accounting for 75.1% of the G×E-SS, in 6 genotype?×?6 environment groups. PCA1 indicated water-limited yield potential, PCA2 pre-flowering stress and PCA3 post-flowering stress. Genotype groups (G1–G6) differed in adaptation to these environments. G5 (VT450-2 and TSN9) were widely adapted and high-yielding. G6 (TDK11 and TDK37) were also high-yielding, topping the rankings in three environment groups, but yielded less in Phalanxay 2012 and Phalanxay 2011, where their phenology was unstable under stress. Other genotype groups showed specific adaptations, but failed to exceed yields of G5 and G6. Hence, VT450-2 and TSN9 (G5) were the preferred genotypes for rainfed lowland in southern Lao PDR, due to their high and stable grain yields. Stability in flowering time and high yield in rainfall deficit were desirable traits for improved farmer livelihood and food security.     

Competitiveness of rice (Oryza sativa L.) cultivars against Echinochloa crus-galli (L.) Beauv. in water-seeded production systems

Developing more competitive rice cultivars could help improve weed management and reduce dependency on herbicides. To achieve this goal, an understanding of key traits related to competitiveness is critical. Experiments were conducted at Gelemen and Bafra districts of Samsun province in Turkey between 2008 and 2009 to measure the competitiveness of rice cultivars against Echinochloa crus-galli, a problematic weed in rice fields. Five rice cultivars (Osmancık, Kızılırmak, Karadeniz, Koral and Neğiş) and five E. crus-galli densities (0, 5, 10, 20, and 30 plants m⁻²) were used. Koral produced significantly more tillers than the other cultivars irrespective of E. crus-galli densities and reduced E. crus-galli tiller production by about 29.5% at Gelemen and 15.8% at Bafra at the highest weed density. E. crus-galli interference reduced rice height and there was a density dependent relationship. Koral was the most competitive cultivar; it maintained high biomass accumulation in early growth stages and suffered smaller reductions in plant height in the presence of E. crus-galli, compared to the other cultivars. In the absence of weed competition, Koral and Neğiş produced the highest yields at both locations. Stepwise regression analyses of the combined data from both years showed tillering capacity, early growth crop biomass, and plant height were critical traits related to competitiveness. These traits should be considered by plant breeders in their efforts to develop rice cultivars with enhanced competitiveness against weeds. Development of such cultivars could substantially reduce herbicide and labor inputs for rice production.     

Simultaneous mitigation of arsenic and cadmium accumulation in rice (Oryza sativa L.) seedlings by silicon oxide nanoparticles under different water management schemes

Paddy and Water Environment - Arsenic (As) and cadmium (Cd) accumulation in rice is a great food safety concern. Simultaneous control of As and Cd accumulation in rice grown in co-contaminated rice...     

Yield response of rice (Oryza sativa L.) genotypes to drought under rainfed lowland: 3. Plant factors contributing to drought resistance

A series of experiments were conducted in drought-prone northeast Thailand to examine the magnitude of yield responses of diverse genotypes to drought stress environments and to identify traits that may confer drought resistance to rainfed lowland rice. One hundred and twenty eight genotypes were grown under non-stress and four different types of drought stress conditions.Under severe drought conditions, the maintenance of PWP of genotypes played a significant role in determining final grain yield. Because of their smaller plant size (lower total dry matter at anthesis) genotypes that extracted less soil water during the early stages of the drought period, tended to maintain higher PWP and had a higher fertile panicle percentage, filled grain percentage and final grain yield than other genotypes. PWP was correlated with delay in flowering (r=−0.387) indicating that the latter could be used as a measure of water potential under stress. Genotypes with well-developed root systems extracted water too rapidly and experienced severe water stress at flowering. RPR which showed smaller coefficient of variation was more useful than root mass density in identifying genotypes with large root system.Under less severe and prolonged drought conditions, genotypes that could achieve higher plant dry matter at anthesis were desirable. They had less delay in flowering, higher grain yield and higher drought response index, indicating the importance of ability to grow during the prolonged stress period.Other shoot characters (osmotic potential, leaf temperature, leaf rolling, leaf death) had little effect on grain yield under different drought conditions. This was associated with a lack of genetic variation and difficulty in estimating trait values precisely.Under mild stress conditions (yield loss less than 50%), there was no significant relationship between the measured drought characters and grain yield. Under these mild drought conditions, yield is determined more by yield potential and phenotype than by drought resistant mechanisms per se.     

A potential method to fix heterosis of rice(Oryza sativa L.)with autoployploid

By crossing homologuos triploid plants derivedfrom twin-seedlings with diploid plants,manykinds of aneuploid were produced as expectedbecause the abnormal chromosome pairing oc- curred in triploid itself and F_1.In the mean- time,we also obtained a few normal developeddiploid F_1 plants.The self progeny(F_2)showed agronomic stability,checked withSSLP and RFLP markers.It was found thatthe F_1 was non-segregated hybrid.In thisstudy,the triploid served as male parent andthe diploid indica rice variety R725 served as     

Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.)

Background

Root system architecture is an important trait affecting the uptake of nutrients and water by crops. Shallower root systems preferentially take up nutrients from the topsoil and help avoid unfavorable environments in deeper soil layers. We have found a soil-surface rooting mutant from an M₂ population that was regenerated from seed calli of a japonica rice cultivar, Nipponbare. In this study, we examined the genetic and physiological characteristics of this mutant.

Results

The primary roots of the mutant showed no gravitropic response from the seedling stage on, whereas the gravitropic response of the shoots was normal. Segregation analyses by using an F₂ population derived from a cross between the soil-surface rooting mutant and wild-type Nipponbare indicated that the trait was controlled by a single recessive gene, designated as sor1. Fine mapping by using an F₂ population derived from a cross between the mutant and an indica rice cultivar, Kasalath, revealed that sor1 was located within a 136-kb region between the simple sequence repeat markers RM16254 and 2935-6 on the terminal region of the short arm of chromosome 4, where 13 putative open reading frames (ORFs) were found. We sequenced these ORFs and detected a 33-bp deletion in one of them, Os04g0101800. Transgenic plants of the mutant transformed with the genomic fragment carrying the Os04g0101800 sequence from Nipponbare showed normal gravitropic responses and no soil-surface rooting.

Conclusion

These results suggest that sor1, a rice mutant causing soil-surface rooting and altered root gravitropic response, is allelic to Os04g0101800, and that a 33-bp deletion in the coding region of this gene causes the mutant phenotypes.     

Study of water stress effects in different growth stages on yield and yield components of different rice (Oryza sativa L.) cultivars

A field experiment was conducted during 2001-2003 to evaluate the effect of water stress on the yield and yield components of four rice cultivars commonly grown in Mazandaran province, Iran. In northern Iran irrigated lowland rice usually experiences water deficit during the growing season include of land preparation time, planting, tillering stage, flowering and grain filing period. Recently drought affected 20 of 28 provinces in Iran; with the southeastern, central and eastern parts of the country being most severely affected. The local and improved cultivars used were Tarom, Khazar, Fajr and Nemat. The different water stress conditions were water stress during vegetative, flowering and grain filling stages and well watered was the control. Water stress at vegetative stage significantly reduced plant height of all cultivars. Water stress at flowering stage had a greater grain yield reduction than water stress at other times. The reduction of grain yield largely resulted from the reduction in fertile panicle and filled grain percentage. Water deficit during vegetative, flowering and grain filling stages reduced mean grain yield by 21, 50 and 21% on average in comparison to control respectively. The yield advantage of two semidwarf varieties, Fajr and Nemat, were not maintained under drought stress. Total biomass, harvest index, plant height, filled grain, unfilled grain and 1000 grain weight were reduced under water stress in all cultivars. Water stress at vegetative stage effectively reduced total biomass due to decrease of photosynthesis rate and dry matter accumulation.     

Critical nitrogen concentrations: implications for high-yielding rice (Oryza sativa L.) cultivars in the tropics

The critical nitrogen concentration of a plant can be defined as the minimum nitrogen concentration required for maximum growth rate at any time. It has been suggested that the relationship between the critical N concentration and dry matter per unit ground area for a wide range of crops is the same and is independent of climatic zone. Results presented in this paper support the concept of a critical N-dilution curve for yield of rice (Oryza sativa L.), which may be independent of climatic zone. The similarity between the nitrogen dilution curves for temperate and tropical environments indicates that there is no intrinsic difference in the ratio of carbon-to-nitrogen capture in those environments even though the final aboveground biomasses differed. Both the rate and duration of resource capture are probably limiting yields in tropical environments. In order to break through the current ceiling-yield barrier of approximately 10 t grain ha⁻¹ in the tropics, superior germplasm must be lodging resistant and capable of acquiring 144 kg N ha⁻¹ (N_0.5) in the first 35 days following transplanting. An examination of the rates of nitrogen acquisition indicated that more emphasis must be placed on providing sufficient nitrogen during the early stage of crop growth if higher yields are to be obtained. The time course of nitrogen accumulation by the aboveground biomass was calculated for weights greater than 1 t ha⁻¹; at weights less than this there were insufficient data to make calculations. At weights of aboveground biomass greater than 1 t ha⁻¹, the rate of nitrogen acquisition per unit ground area declined. The decline probably reflected a lowering in crop demand for soil nitrogen caused by the internal cycling of nitrogen from aging to young developing tissues; roots' age may also play a part in the decline. The estimated rate of demand for nitrogen by the panicle exceeded the rate at which the aboveground biomass acquired it, emphasizing the importance of having a large `reservoir' of nitrogen in vegetative tissues. Such a reservoir would ensure that the nitrogen demand of the panicle could be met without causing the photosynthetic capacity of the crop to prematurely lose its ability to meet the carbohydrate demand of the panicle.     

Effect of SWD irrigation on photosynthesis and grain yield of rice (Oryza sativa L.)

A study was conducted with the objective to determine the influence of (shallow water depth with wetting and drying) SWD on leaf photosynthesis of rice plants under field conditions. Experiments using SWD and traditional irrigations (TRI) were carried out at three transplanting densities, namely D1 (7.5 plants/m²), D2 (13.5 plants/m²) and D3 (19.5 plants/m²) with or without the addition of organic manure (0 and 15 t/ha). A significant increase in leaf net photosynthetic rate by SWD was observed with portable photosynthesis systems in two independent experiments. At both flowering and 20 DAF stages, photosynthetic rate was increased by 14.8% and 33.2% with D2 compared to control. SWD significantly increased specific leaf weight by 17.0% and 11.8% over the control at flowering and 20 DAF stages, respectively. LAI of D2 under SWD was significantly increased by 57.4% at 20 DAF. In addition, SWD with D2 significantly increased the leaf dry weight (DW) at both growing stages. At all the three densities, SWD increased the leaf N content and the increase was 18.9% at D2 density compared with the conventional control. In SWD irrigation, the leaf net photosynthetic rate was positively correlated with the leaf N content (R² = 0.9413), and the stomatal conductance was also positively correlated with leaf N content (R² = 0.7359). SWD enhanced sink size by increasing both panicle number and spikelet number per panicle. The increase in spikelet number per panicle was more pronounced in the 15 t ha⁻¹ manure treatment than in the zero-manure treatment. Grain yield was also significantly increased by SWD, with an average increase of 10% across all treatments. SWD with D2 had the highest grain yield under the both cultivars with or without 15 t ha⁻¹ manure treatment, which was 14.7% or 13.9% increase for Liangyoupeijiu and 11.3% or 11.2% for Zhongyou 6 over the control, respectively.     

Growth and yield formation of rice (Oryza sativa L.) in the water-saving ground cover rice production system (GCRPS)

A new water-saving ‘Ground Cover Rice Production System’ (GCRPS) was evaluated in 2001 and 2002 near Beijing, North China. Using GCRPS, lowland rice was cultivated without a standing water layer during the entire growth period and plots were irrigated when soil water tension was below 15 kPa (approximately 90% water holding capacity). In order to prevent soil evaporation, the soil surface was covered with 14 μm thick plastic film (GCRPS_Plastic) or mulched with straw (GCRPS_Straw). In a third GCRPS treatment the soil was left uncovered (GCRPS_Bare). These treatments were compared with lowland rice cultivated under traditional paddy conditions (Paddy control). In an additional treatment with bare soil, one aerobic rice variety was cultivated. Compared to Paddy control, only 32–54% of irrigation water was applied in GCRPS treatments. Plants in GCRPS were smaller, developed fewer panicles and had a smaller leaf area index compared to Paddy control. Yield was significantly less in GCRPS_Bare and GCRPS_Straw compared to Paddy control in both years, while yield in GCRPS_Plastic was only 8% less than the Paddy control yield in 2002. Water-use efficiency (WUE, gram grain yield per litre water input) in GCRPS_Plastic was higher (0.35) than in Paddy control (0.23). Grain yield was highly significantly correlated with maximum leaf area index and leaf area index duration. Among yield components, the number of productive tillers had the greatest positive effect on yield, while the number of grains per panicle, thousand-grain weight and harvest index remained almost unaffected. Under uncovered condition, the aerobic rice variety had a significantly higher harvest index (HI), yield, and WUE compared to the lowland rice variety (GCRPS_Bare). The experiment demonstrates that GCRPS has potential to save substantial amounts of water at relatively minor yield penalties, if stress factors such as low soil temperature, water deficit, and nutrient deficiencies during the vegetative growth stage are avoided by suitable management practices.