Population changes in Phytophthora infestans in Taiwan associated with the appearance of resistance to metalaxyl

In recent years, late blight, caused by Phytophthora infestans (Mont) De Bary, has increased in severity in many parts of the world, and this has been associated with migrations which have introduced new, arguably more aggressive, populations of the pathogen. In Taiwan, late blight has been endemic on outdoor tomato crops grown in the highlands since the early 1900s, but recent epidemics have been more damaging. To ascertain the present status of the Taiwanese population of P infestans, 139 isolates of the pathogen collected and maintained by the Asian Vegetable Research and Development Center (AVRDC) were characterized using mating type, metalaxyl sensitivity, allozyme genotype, mitochondrial haplotype and RFLP fingerprinting. Up to 1997, all isolates were found to belong to the old clonal lineage of P infestans (US-1 and variants), but in isolates from 1998 a new genotype appeared, and by 2000 this had apparently completely displaced the old population. This new genotype was an A1 mating type and has the dilocus allozyme genotype 100/100/111, 100/100 for the loci coding for glucose-6-phosphate isomerase and peptidase, respectively. These characters, together with RG57 fingerprinting, indicated that these isolates belonged to the US-11 clonal lineage, a minority (11%) being a previously unreported variant of US-11. Whereas metalaxyl-resistant isolates were not detected in the old population, 96% of the new genotypes proved resistant, with the remainder being intermediate in sensitivity. It may be inferred from this sudden, marked change in the characteristics of the Taiwanese P infestans that a new population of the pathogen was introduced around 1997-98 and that this may well have already been metalaxyl-resistant when it arrived, although a role for in situ selection cannot be excluded.     

宁夏马铃薯晚疫病菌交配型和生理小种研究

为明确宁夏回族自治区马铃薯主产区晚疫病菌的交配型种类以及生理小种的类型、组成和分布,为宁夏有针对性地选育马铃薯抗晚疫病品种提供科学依据。利用A1、A2交配型标准菌株和含有11个主效抗性基因的鉴别寄主,对2018年-2019年从原州区、泾源县、彭阳县、隆德县、西吉县、盐池县、海原县采集得到的130个马铃薯晚疫病菌菌株进行交配型和生理小种鉴定。结果表明,宁夏马铃薯晚疫病菌群体的交配型和生理小种存在多样性,采集地交配型有A1、A2、SF(自育型)3类,分别占被测菌株的30%、63.8%、6.2%;生理小种有8种类型,其中生理小种1.2.3.4.5.6.7.8.9.10.11发生频率最高,占被测菌株总数的44.62%,是宁夏马铃薯主栽区的晚疫病菌优势小种,在各测试地均有分布;次优势小种为3.4.10和1.2.3.5.6.7.8.11,发生频率分别为12.31%和10.77%。宁夏不同种植区域马铃薯晚疫病菌交配型组成复杂,采集地组成差异较大,但西吉县、原州区交配型年度间的变化基本趋于一致。宁夏马铃薯晚疫病菌群体组成日趋复杂,生产中要合理布局已有抗病品种,挖掘培育抗病水平高的新品种,综合防控马铃薯...     

The occurrence of the A2 mating type of Phytophthora infestans in the Netherlands; significance and consequences

Phytophthora infestans (Mont.) de Bary, the causal agent of potato late blight, was first discovered in Europe in 1845. Until 1980, only A1 mating type isolates were known to occur in Europe. The absence of A2 mating type isolates restrained the fungus from sexual reproduction. In the early 1980s, A2 mating type isolates were discovered in Europe. Presumably, a new introduction ofP. infestans isolates originating from Mexico had taken place. In this paper, the significance of the presence of A1 and A2 mating type isolates in the Netherlands is reviewed. Now that both mating types are present, sexual reproduction can occur and its consequences for the control of potato late blight are discussed.     

昆明桃园梨小食心虫发生规律

2011-2013年对昆明桃园梨小食心虫发生规律及为害特点进行了系统调查研究。结果表明:3年来昆明地区梨小食心虫发生趋势基本一致,但各年度发生的大高峰期有差异,2012年成虫发生大高峰期为越冬代、第一代;2013年成虫发生大高峰期在第二、三代,这与当时的温度、降水量有很大关系。昆明梨小食心虫一年发生4代,越冬代成虫发生高峰期在3月中旬至4月上旬,第一代发生高峰期在5月上旬至6月中旬,越冬代、第一代主要为害桃树新梢,新植桃园幼虫更趋向在低龄桃树为害,幼虫蛀梢的高峰期在成虫羽化高峰期后15~30d;第二、三代发生高峰期在7月上旬至9月下旬,世代重叠明显,后两代主要为害果实。经饲养观察,桃园梨小食心虫性比[♀/(♀+♂)]为0.57~0.64,幼虫被天敌寄生率为26.9%,幼虫蛀果率为1.25%~5%。     

云南辣椒疫病的分子诊断及其病原菌群体特征研究

 对2005~2007年分离自云南省辣椒疫病的病原菌进行分子生物学鉴定,并对病原菌的群体特征进行研究。PCR特异性扩增表明,引起云南辣椒疫病的病原菌是辣椒疫霉。交配型测定显示,234个云南辣椒疫霉菌株由A1、A2和A1A2(自育型)3种交配型组成,以A2和A1A2交配型为主。其中,A2占45.3%,A1A2占43.2%,A1仅占11.5%。大部分产区3种交配型共存,在田间进行有性生殖的可能性很大。甲霜灵敏感性测定的200个菌株中,甲霜灵敏感菌株是主要菌系,占测定菌株的95.5%,中抗和抗性菌株比例较低,分别为2.0%和2.5%。抗药性菌株的出现与甲霜灵的选择压力有关。云南辣椒疫霉群体组成较为复杂,A1A2交配型可能在云南辣椒疫霉的有性生殖中起到了重要的作用,成为影响群体结构的一个重要途径。     

Aggressiveness and Competitive Fitness of Phytophthora infestans Isolates Collected from Potato and Tomato in France

ABSTRACT To test the hypothesis that host-related differences in the genotypic composition of populations of the late blight pathogen Phytophthora infestans can be explained by differential pathogenicity, the aggressiveness of isolates of the pathogen collected in France from potato and tomato was measured on detached leaflets of potato (cv. Bintje) and tomato (cv. Marmande). A preliminary trial with four isolates (two each from potato and tomato) showed that lesion appearance and development were similar for each isolate in detached leaflets and in whole plant tests in growth cabinets. Isolates collected from tomato were more pathogenic to tomato than isolates collected from potato. This was particularly the case for isolates belonging to the A2 mating type. Isolates originating from potato had a higher infection efficiency and a higher sporulation capacity on this host, but they induced lesions that generally spread more slowly than those caused by isolates from tomato. Extensive variation for components of aggressiveness on potato, and to a lesser extent on tomato, was observed in collections of isolates from each of the two hosts. Competition experiments between one potato isolate and one tomato isolate in field plots of the susceptible potato cv. Bintje clearly demonstrated the higher competitive fitness of the potato isolate on its host of origin. Therefore, differential pathogenicity to potato and tomato certainly contributes to the differentiation between P. infestans populations present on potato and tomato in France; however, additional factors, possibly related to survival ability or random genetic drift, are probably also involved and may explain the persistence of weakly pathogenic isolates in these populations.     

Evaluation of PCR markers for <Emphasis Type="Italic">Phytophthora infestans</Emphasis> mating type determination

Late blight is a devastating potato disease caused by Phytophthora infestans. This organism can reproduce asexually and sexually between the strains of two mating types named A1 and A2. Mating type is an important strain characteristic affecting the pathogen’s population structure. We validate different PCR markers for P. infestans mating type determination by comparison of the results obtained with the markers (W16, S1, PHYB) with the pairing test results for 26 isolates collected worldwide and for a group of 146 Polish isolates. This study identifies an interesting feature of the isolates of genotype US-1. For all these A1 mating type isolates, the product specific for A2 isolates is amplified using the marker W16. Analysis of sequences of W16 PCR products indicates high similarity of the US-1 isolates with modern A2 mating type isolates. When US-1 isolates are excluded from analysis, 95 and 96% of isolates are correctly assigned by markers W16 and S1, respectively, when compared with the pairing test results. Marker PHYB produces 14% of discrepant results with the pairing test. Our results show that molecular markers can be useful tools for P. infestans mating type determination, but their application should be preceded by validation in each local population since their efficiency may vary depending on a pathogen’s genotype.     

Distribution of major clonal lineages EU_13_A2, EU_2_A1, and EU_23_A1 of Phytophthora infestans associated with potato late blight across crop seasons and regions in Algeria

Potato is one of the most important agricultural crops in Algeria and worldwide. Each year, potato late blight, caused by Phytophthora infestans, is responsible for significant damage that leads to large production losses, and is thus a direct threat to food security in Algeria. In this study, 131 isolates of P. infestans and 92 DNA fingerprints captured on FTA cards were sampled from commercial and seed production fields in three major potato production regions (western, eastern, and central) during the main-season and late-season in Algeria over six cropping seasons (2010–2016). Genotypes of P. infestans and population genetic diversity were analysed using a 17-plex simple-sequence repeat (SSR) marker assay, and the mating type of all isolates was characterized. Both mating types (A1 and A2) were found, and often occurred in the same field. Differences in mating type proportion were observed between regions and between sampling periods. Analysis with SSR markers showed the prevalence of the EU_13_A2 lineage (70%) over EU_2_A1 (16%), EU_23_A1 (10%), and 4% of unknown multilocus lineage (MLL). The EU_13_A2 showed differentiation within the group. EU_23_A1 was found mainly in late-season crops. However, the cropping region did not influence the distribution of lineages due to the dispersal of the pathogen in Algeria by seeds. Genetic structure did not reveal a clear variation in distribution of the three lineages throughout the sampling regions. These data provide important new information on the composition and change over time of P. infestans populations in Algeria and open the way for a better understanding of the local epidemiology of this important pathogen.     

Phenotypic and genotypic diversity of Phytophthora infestans populations in Scotland (1995–97)

In a survey of Scottish potato late blight ( Phytophthora infestans ) populations from 1995 to 1997, nearly 500 isolates were collected from over 80 disease outbreaks in commercial potato crops and gardens/allotments. The isolates were characterized by mating type, resistance to the fungicide metalaxyl and almost 300 were examined by DNA-based AFLP fingerprinting. These data were examined alongside cropping details to determine the population structure in the context of existing disease management strategies. A1 and A2 mating type isolates were present in both commercial potato crops and gardens or allotments although they coexisted more frequently in the latter sites. One-fifth of the isolates collected were of the A2 mating type and the frequency was similar over the 3 years and amongst sites. In 1995 the proportions of isolates that were sensitive and resistant to metalaxyl were equal (∼40%) but, over the following 2 years, the frequency of resistant isolates decreased and that of intermediate isolates increased. The mating type response to metalaxyl differed markedly, with 52% of A1 and only 5% of A2 isolates being resistant. Considerable molecular diversity was observed, with over half of the isolates having unique AFLP patterns. Analysis of the molecular and phenotypic data revealed a broad clustering of the population into three groups. Many factors point to an A2 population restricted by its sensitivity to phenylamides. The majority of the A2 isolates were found in a single AFLP group, but the presence of mixed mating type samples, an increasing frequency of isolates of intermediate metalaxyl resistance and the extent of the AFLP diversity suggest occasional sexual recombination, and thus gene flow, between groups.     

Ascochyta blight of chickpea in Australia: identification, pathogenicity and mating type

The aetiology of blight of chickpea in South Australia was studied following sporadic disease outbreaks over several years that had been tentatively identified as Phoma blight. Nine fungal isolates from diseased chickpeas were tested for pathogenicity in the glasshouse, of which two caused symptoms resembling those of Ascochyta blight. The two aggressive isolates were identified as Ascochyta rabiei based on morphological characteristics of cultures and RAPD analysis. This was further confirmed by successful mating to international standard isolates, which showed that the two Australian isolates were MAT1-1. These isolates are accessioned as DAR 71767 and DAR 71768, New South Wales Agriculture, Australia. This is the first time that A. rabiei has been positively identified in commercial chickpeas in the southern hemisphere. The pathogen was found (in 1992) in only one of 59 seed samples harvested throughout Australia between 1992 and 1996 and tested using International Seed Testing Association methods. The teleomorph has not been found in Australia and results to date suggest that only one mating type is present. This suggests that quarantine restrictions on imported chickpea seed should be retained to prevent the introduction of the opposite mating type.     

Genotypic and phenotypic characterization of Phytophthora infestans populations on Java,Indonesia

Phytophthora infestans is endemic to Indonesia and can infect potato crops at any stage in the growing season. Little is known about P. infestans populations in Indonesia. The objectives of this study were first to identify the genotypes causing late blight in the main potato-growing regions on Java in Indonesia, and secondly to examine genotypic diversity in the P. infestans populations in those regions. Samples were collected on FTA cards (n = 140) or in tubers (n = 6) from 15 locations in nine regencies over four years (2016–2019). Microsatellite analysis revealed that late blight outbreaks in these regencies were caused by EU_2_A1 and other genotypes that are unique to Indonesia. Eighty percent of the samples that amplified with CAPS markers were the A1 mating type. Cultures of six isolates were determined to be the A1 mating type based on the pairing test, and of these, two isolates were intermediate and four were sensitive to metalaxyl-M (mefenoxam). The mode of reproduction of the P. infestans population on Java, Indonesia, was found to be clonal. However, as the sample size in this study was small, more isolates need to be tested to confirm this. Microsatellite analysis revealed that 90% of Indonesian samples had trisomic loci. A high number of multilocus genotypes (MLGs) were found in all nine regencies (131 MLGs out of 146 samples). Results indicate that there is ongoing polyploidization in these populations due to a high mutation rate and no selection pressure from the susceptible potato hosts that are being grown in Indonesia.     

Tomato late blight (Phytophthora infestans) in Uganda

A survey on the tomato late blight situation and current practices for disease management was carried out in Uganda using an informal structured questionnaire approach. Ten districts from different agroclimatic zones were selected for the survey. Phytophthora infestans isolates from tomatoes were obtained from the zones and only the A1 mating type was recovered. Tomato cultivation is practised year-round. The major commercial varieties grown, Moneymaker, Marglobe, Heinz and Roma, were susceptible to late blight. Late blight and bacterial wilt ( Pseudomonas solanacearum ) were the major diseases, with bollworm ( Helicoverpa armigera ) and thrips ( Thrips spp .) the major insect pests. Fungicides, mostly mancozeb, were the predominant control method used by farmers. Sanitation is practised by some farmers, but only in association with fungicides, to control late blight. Plant nutrition is not perceived as playing a major role in late blight management. Problems associated with pesticides and poor marketability were identified as major constraints to tomato production in Uganda.     

Spatial Analysis of Phytophthora infestans Genotypes and Late Blight Severity on Tomato and Potato in the Del Fuerte Valley Using Geostatistics and Geographic Information Systems

ABSTRACT Genetic structure of Phytophthora infestans, the causal agent of potato and tomato late blight, was analyzed spatially in a mixed potato and tomato production area in the Del Fuerte Valley, Sinaloa, Mexico. Isolates of P. infestans were characterized by mating type, allozyme analysis at the glucose-6-phosphate isomerase and peptidase loci, restriction fragment length polymorphism with probe RG57, metalaxyl sensitivity, and aggressiveness to tomato and potato. Spatial patterns of P. infestans genotypes were analyzed by geographical information systems and geo-statistics during the seasons of 1994-95, 1995-96, and 1996-97. Spatial analysis of the genetic structure of P. infestans indicates that geographic substructuring of this pathogen occurs in this area. Maps displaying the probabilities of occurrence of mating types and genotypes of P. infestans, and of disease severity at a regional scale, were presented. Some genotypes that exhibited differences in epidemiologically important features such as metalaxyl sensitivity and aggressiveness to tomato and potato had a restricted spread and were localized in isolated areas. Analysis of late blight severity showed recurring patterns, such as the earliest onset of the disease in the area where both potato and tomato were growing, strengthening the hypothesis that infected potato tubers are the main source of primary inoculum. The information that geostatistical analysis provides might help improve management programs for late blight in the Del Fuerte Valley.     

Assessment of the impact of mid-season late blight infection on disease development and yield of potato variety Russet Norkotah in Maine

Development of late blight of potatoes caused by Phytophthora infestans (US 8 fungal genotype, A2 mating type) was monitored in two Russet Norkotah commercial fields at Fort Fairfield in 1996 and Duncan Farm in 1997. Experimental plots representing various disease treatments (low, moderate, high and random late blight severity levels) were established in two fields in 1996. In 1997, only low and high disease treatments were established. The application of fungicides for late blight control was conducted in both years. Late blight incidence and severity were assessed in each plot of each treatment. Components of late blight disease development, tuber blight incidence and tuber yields were determined from each plot. Progress of late blight disease was rapid in 1996 but not in 1997. During the 1996 cropping season, mean disease incidence and severity in the random disease treatment plots were 84 and 21% respectively within 10 days of disease detection. In 1997, low levels of late blight severity were detected in the field plots. Average numbers of late blight leaf and stem lesions on infected plant and fungal sporangia on the diseased leaf were not significantly affected by disease treatment. Late blight foliar severity significantly affected potato tuber yields. Lowest tuber yield was obtained in plots with high disease levels and highest yields were recorded in plots with low late blight severity in 1996. Late blight severity was significantly correlated with tuber yield but not with per cent tuber blight.     

Population structure of Phytophthora infestans in Turkey reveals expansion and spread of dominant clonal lineages and virulence

Late blight, caused by the oomycete Phytophthora infestans, is considered the most important and destructive disease of potato in Turkey. In this study, characterization of 367 isolates of P. infestans obtained from the potato-growing areas of the country was carried out to evaluate the pathogen population structure over the 2017–2019 production seasons. The isolates were characterized by numerous features including mating type, in vitro mefenoxam sensitivity, simple-sequence repeat (SSR) markers, and virulence against a set of potato differential lines. Most isolates were A2 mating type (353 isolates). Also, 68% of isolates were resistant to mefenoxam; the remainder were intermediate in their sensitivity and there were no sensitive isolates. SSR-based genotypic analysis of P. infestans populations showed a low genetic diversity. The 13_A2 clonal lineage predominated with a frequency of 92.1%, followed by 34_A1 (3.3%) and 37_A2 (2.7%). Genotypes 34_A1 and 37_A2 were detected only in 2019. This is the first report of 34_A1 and 37_A2 clonal lineages causing late blight disease of potato in Turkey. The most abundant virulence type was one overcoming resistance genes R1, R2, R3, R4, R6, R7, R10, and R11. These results emphasized that the migration of individuals and the asexual generation of subclonal differences were the main factors driving the population structure of P. infestans in Turkey.     

中国马铃薯晚疫病监测预警系统“China-blight”的组建及运行

马铃薯晚疫病是严重威胁世界马铃薯生产和粮食安全的重要病害之一,同时也是植物病害中流行速度最快的病害之一。由于品种多不抗病,目前国内外主要依靠化学防治控制该病害。为了提高用药的时效性,将信息技术与植物病害流行学原理相结合,设计并组建了中国马铃薯晚疫病监测预警系统"China-blight"(www.china-blight.net)。该系统由"中国晚疫病实时分布"、"未来48小时不同区域晚疫病菌侵染危险性预测"和"晚疫病化学防治决策支持系统"等子系统构成,此外还包括"晚疫病防治方法"、"品种抗病性"、"化学药剂库"、"其他病虫害"、"问题与经验交流"和"用户田间管理电子档案"等知识信息与服务功能。通过对2009年我国北方马铃薯一作区6-7月份病害侵染时段出现次数与晚疫病实际发生情况进行比较,预测信息与病害实际发生程度相符,该系统可以用于对马铃薯晚疫病田间防治的指导。     

Genotypic and phenotypic characterization of Phytophthora infestans in South Korea during 2009–2016 reveals clonal reproduction and absence of EU_13_A2 genotype

In order to better understand the Phytophthora infestans population structure in South Korea, 172 isolates were collected between 2009 and 2016 from four major potato cultivation areas. Fungicide (metalaxyl and dimethomorph) response, mating type, and microsatellite (SSR) genetic fingerprints were analysed to characterize these isolates. Ten isolates collected in Gyeongnam Province, which specializes in protected winter cultivation in polytunnels, were A2 mating type. All other isolates were A1 mating type. Overall, 42% of the isolates were resistant to metalaxyl, and 43% were sensitive. All isolates were sensitive to dimethomorph. From the SSR fingerprints, 45 distinct genotypes were identified, which could be clustered into four clonal lineages: KR_1_A1, KR_2_A2, SIB-1, and US-11. KR_1_A1 was the predominant P. infestans genotype in South Korea. KR_2_A2 was only found in Gyeongnam Province; all isolates were A2 mating type and resistant to metalaxyl. SIB-1 was dominant until 2013 but its frequency has gradually decreased in more recent years. US-11 was first found in 2014, after which its frequency has increased to become codominant with KR_1_A1. The calculated standardized index of association (I_A) suggests that the South Korean P. infestans population is undergoing clonal reproduction. When compared with populations of P. infestans from the Netherlands, it has less genetic diversity and the dominant Netherlands P. infestans genotype, EU_13_A2 (Blue_13), was not found in South Korea. Such monitoring of the pathogen population contributes to a more efficient integrated pest management-based control strategy for potato late blight control in South Korea.     

Phenotypic and Genotypic Characterisation of Northern Ireland Isolates Of Phytophthora Infestans

Genetic and phenotypic diversity of the population of the late blight pathogen Phytophthora infestans in Northern Ireland was assessed from 223 single-lesion isolates collected from 29 sites in 1995 and 1996. The proportion of metalaxyl-resistant isolates was approximately 14%. The A2 mating type was not detected. Allozyme analyses revealed that the Northern Ireland isolates were monomorphic and homozygous at the loci coding for allozymes of glucose-6-phosphate isomerase and peptidase (Gpi 100/100, Pep 100/100). The majority of isolates tested (156 out of 162) were mitochondrial DNA haplotype IIa. Among the remaining isolates, four were haplotype Ia, two were the rare IIb haplotype and none was of the old Ib type. RAPD-PCR analysis of selected isolates revealed relatively little diversity among the Northern Ireland isolates, which clustered separately from isolates from GB and the European mainland.     

Population structure and host range of the potato late blight pathogen Phytophthora infestans in Peru spanning two decades

The genetic diversity of the late blight pathogen Phytophthora infestans infecting cultivated potato and alternative hosts growing in the vicinity of fields in the main potato-growing areas of the Peruvian Andes was characterized using collections from 1997–2013 as reference. The Peruvian P. infestans population, including previously collected and current isolates, consists of four clonal lineages (EC-1, US-1, PE-3 and PE-7) that belong to the A1 mating type and have been present in the country for decades. The first report of US-1 was in isolates collected between 1982 and 1986; meanwhile, EC-1 and PE-3 appeared for the first time in isolates from 1992 and PE-7 was found in 1997. The pathogen has a very broad host range among the solanaceous plants infecting cultivated potato, tomato, pear melon and several wild species. The solanaceous species growing in the vicinity of the potato fields sampled were identified and surveyed for late blight-like symptoms. Phytophthora infestans was isolated from nine wild species, including three new host species: Solanum zahlbruckneri, Solanum grandidentatum and Iochroma grandiflorum. There was no clear host specialization, but geographical substructuring was found as well as changes in the pathogen populations at the regional level. The clonal lineage EC-1, which is mostly resistant to metalaxyl, has complex virulence and contains a high level of subclonal variation, continues to dominate the population. Some multilocus genotypes of the EC-1 lineage were sampled in high frequencies and were found among the previously collected and new samples.     

Prediction studies supported by computer on potato late blight in central Anatolia in Turkey*

Prediction of potato late blight epidemics, caused by Phytophthora infestans (Mont) de Bary, was studied in three different villages of Bolu Province having large potato growing areas with the Winstel and Ullrich Schrodter models in the years 2002–05. During these years, a late blight outbreak was observed only in 2005 with the disease being less apparent in the other years. The Ullrich Schrodter model was found to poorly predict potato late blight epidemics in 2005. The Winstel model gave first warnings too early but correctly predicted late infections. Both the A1 and A2 mating types were found in Central Anatolia for the first time, in Bolu province.