绵羊DRA基因外显子2酵母表面展示库的构建及鉴定

根据绵羊DRA基因序列和酿酒酵母表面展示载体pYD1上的多克隆位点设计特异性引物,从绵羊组织中提取总RNA并逆转录,利用PCR技术扩增得到DRA基因,克隆获得762 bp目的片段,并提交GenBank,登录号:KR422362。将该基因通过双酶切连接到表面展示载体pYD1 上,成功构建了酿酒酵母表面展示重组质粒pYD1-DRA。将DRA基因外显子2两端进行基因点突变,形成新的酶切位点,继而对外显子2设计特异性引物,对绵羊大样本进行DNA池化,并将外显子2扩增产物测序,分析其多态性获得多态位点。重组质粒双酶切得到246 bp具有多态性的外显子2,将其连接到经同样酶双酶切的表面展示重组突变载体pYD1-DRA-TB上,成功构建了酿酒酵母表面展示库。将其转化用于表面展示的酿酒酵母EBY100感受态细胞中,得到酵母转化子,挑取酵母菌的单克隆通过PCR 扩增及序列测定证实了DRA基因库已成功整合到酿酒酵母基因组中。经半乳糖诱导后,通过免疫荧光法在荧光显微镜下检测得到DRA基因库已成功展示在酵母细胞表面。     

绵羊DRB1基因外显子2酵母表面展示库的构建及鉴定

为了揭示布鲁氏菌病的致病机制并研制其新型分子疫苗,试验利用酿酒酵母展示系统展示绵羊白细胞表面抗原DRB1基因,构建DRB1基因外显子2的酵母表面展示库。参照GenBank中绵羊MHCⅡDRB1基因序列设计引物,以绵羊脾脏组织cDNA为模板,反转录扩增得到预期长度的产物,双酶切连接到克隆载体pEASY-T1,命名为pEASY-T1-DRB1。双酶切连接到表面展示载体pYD1上,成功构建了表面展示重组质粒pYD1-DRB1。以pEASY-T1-DRB1为模板,将DRB1基因外显子2两端进行点突变,产生新的酶切位点,然后对外显子2设计特异性引物。对500个绵羊样本进行DNA池化,扩增DRB1基因外显子2序列,双酶切后连接到经相同酶双酶切的表面展示重组突变载体pYD1-DRB1-TB上,构建酿酒酵母表面展示库。转化大肠杆菌DH5α感受态细胞,计算库容量。将其转化酿酒酵母EBY100感受态细胞,经半乳糖诱导,通过免疫荧光法在荧光显微镜下检测。结果显示,绵羊DRB1基因成功整合到酵母基因组中,酵母展示库的库容量在105个以上,DRB1基因库成功展示在酵母细胞表面。由此说明,该库可用于下一步布鲁氏菌抗原肽的筛选。     

哈萨克绵羊DRB1基因外显子1和4多态性与布鲁氏菌病的相关性研究

试验旨在对哈萨克绵羊DRB1基因外显子1和4多态性与布鲁氏菌病的相关性进行研究。使用虎红平板凝集试验（RBPT）对试羊的血清进行血清学检测，参考GenBank中绵羊MHC ClassⅡ区DRB1基因序列（登录号：NC_040271.1），对其外显子1和4片段设计引物，采用PCR-SSCP和DNA测序技术对230只哈萨克绵羊的DRB1基因进行多态性检测，分析其多态位点与哈萨克绵羊布鲁氏菌易感性之间的关系。RBPT检测发现66只哈萨克绵羊为布鲁氏菌感染阳性，阳性检出率为28.7%。外显子1片段存在一个SNP位点（F1-G22A），测序确定两种基因型（GG、GA），优势等位基因和基因型分别为G、GG，F1-G22A多态位点的易感基因型为GA。卡方检验表明，哈萨克绵羊DRB1基因F1-G22A多态位点与布鲁氏菌易感性的相关性不显著（P>0.05）。通过生物信息学在线软件分析得出，F1-G22A多态位点导致了RNA二级结构的改变和最小自由能的降低，引起了蛋白质二级结构的改变。DRB1基因外显子4片段未发现SNPs。由此得出，哈萨克绵羊DRB1基因F1-G22A多态位点与布鲁氏菌易感性可能存在一定的相关性。     

Construction and Identification of Yeast Surface Display Libraries of Ovis aries DRA Gene Exon 2

The specific primers were designed according to Ovis aries DRA gene sequence deposited in GenBank and the multiple cloning site of the plasmid pYD1,which was a vector used for protein surface display on Saccharomyces cerevisiae.The gene encoding DRA was amplified by PCR using the genomic RNA of Ovis aries.The 762 bp fragment was cloned and released in GenBank and registration number was KR422362.The PCR product was inserted into the yeast surface display plasmid vector pYD1 by double enzyme digestion.It was indicated that DRA gene was successfully integrated into the genome.Dot mutation was made at both ends of exon 2 in DRA gene for making restriction enzyme cutting site and design the exon 2 specific primers according to mutated Ovis aries DRA gene sequence.Sequenced exon 2 amplification products based on DNA pooling of sheep large sample template was analyzed the polymorphic loci.The polymorphic exon 2 246 bp fragment was obtained by double enzyme digestion and connected to surface display restructuring mutation carriers pYD1-DRA by the same double enzyme digestion,and then we successfully constructed yeast surface display libraries.We transformed it into Saccharomyces cerevisiae EBY100 cell.Yeast monoclone was identified by PCR amplification and sequencing,and we confirmed that DRA gene had been integrated into Saccharomyces cerevisiae genome.After galactose induced,it was detected that DRA gene library had been successfully demonstrated on the yeast cell surface under the fluorescence microscope by immunofluorescence method.     

天祝白牦牛和甘南牦牛DRB3基因外显子2多态性研究

试验通过对天祝白牦牛和甘南牦牛DRB3基因外显子2部分CDS序列进行分析,获得其准确单倍型,通过直接测序与聚合酶链式扩增阻碍突变系统(ARMS)扩增法获得干净的单链,对高度杂合的双链进行分型。结果发现65个SNPs,1个密码子的插入缺失,获得30个单倍型,其中有7个单倍型是首次发现,应该是天祝白牦牛和甘南牦牛特有的单倍型。通过对已知牛属所有DRB3基因外显子2单倍型与本研究发现的单倍型进行分析发现天祝白牦牛和甘南牦牛分享普通牛和瘤牛单倍型,可能有普通黄牛和瘤牛的遗传背景,且DRB3基因外显子2的4、25、30、53、59、62、63、66、78氨基酸位点受到了正选择的影响,主要发生在天祝白牦牛群体里,这与天祝白牦牛长期选育白毛有一定的关系。     

哈萨克羊DRB1基因外显子3多态性及生物信息学分析

试验旨在研究白细胞表面抗原DRB1基因外显子3多态性与哈萨克羊布鲁氏菌病易感性的相关性。运用混合DNA池结合PCR产物直接测序方法,对哈萨克羊DRB1基因外显子3进行多态性分析,经卡方检验分析每个SNP位点的等位基因频率、基因型频率及其多态性与布鲁氏菌病易感性的相关性,利用生物信息学分析软件对PCR扩增所获序列进行RNA二级结构及蛋白质的二级结构和抗原表位分析。结果表明,在282 bp的外显子3序列中共检测到7个SNPs,分别为：T10C、C119T（Trp→Arg）、G215C（Gln→Glu）、A238G、T245G（Ser→Ala）、G256A、C259T,这些位点在病例组和对照组之间的等位基因频率及各基因型间不存在显著性差异（P > 0.05）;进一步分析发现,各突变位点均引起RNA二级结构和最小自由能的改变,各错义突变位点均未引起蛋白质二级结构和抗原表位的改变。由此得出,DRB1基因外显子3的7个SNPs位点（T10C、C119T、G215C、A238G、T245G、G256A和C259T）与哈萨克羊布鲁氏菌病易感性无相关性。     

亚洲黑熊主要组织相容性复合体DQA及DRB基因外显子2多态性分析

试验旨在分析亚洲黑熊主要组织相容性复合体(major histocompatibility complex,MHC) DQA和DRB基因外显子2多态性。采用PCR扩增和克隆测序等方法对来自云南地区的40只亚洲黑熊DNA样本进行研究。结果发现,在40只亚洲黑熊样本中检测出了9个DQA外显子2等位基因和13个DRB外显子2等位基因,和大熊猫相比,亚洲黑熊在DQA和DRB基因外显子2位点上有较高的多态性。通过对推导出的氨基酸序列抗原结合位点的同义替换和非同义替换的比较,证明了DQA和DRB位点的平衡选择作用。     

藏鸡MHCB-G基因第1、2外显子的遗传多态性分析

本研究根据NCBI上红色原鸡MHC（主要组织相容性复合物）B—G基因序列设计特异性引物,在藏鸡、白来航鸡、寿光鸡基因组中扩增出包含第一外显子、第二外显子在内的长度为1178bp的DNA特异性片段,并对该片段的核苷酸序列进行PCR测序及比对分析。结果发现：在MHCB—G基因的第1、2外显子上,藏鸡在177位存在突变点,由C→T;藏鸡在345位存在缺失现象,白来航鸡和寿光鸡都为C;藏鸡在511位存在突变点。由C→T;藏鸡在547位存在突变点．由T→C。     

猪瘟病毒E2基因噬菌体展示多肽库的构建及表位鉴定

本研究通过建立CSFV噬菌体展示多肽库,并对其进行生物淘选,以期获得E2蛋白上新的抗原表位.选择CSFV石门株(SM)和疫苗株(HCLV)为代表株,采用噬菌体展示技术,以T7select415-1b为载体,分别构建了CSFV SM株和HCLV株E2基因噬菌体展示多肽库(SM-E2库和HCLV-E2库).通过生物淘选和噬菌体原位杂交技术,采用7株猪瘟单克隆抗体和1株猪瘟高免血清分别对构建的SM-E2库和HCLV-E2库进行抗原表位筛选.结果共筛选到了5条与E2蛋白高度同源的序列,在E2蛋白上的同源区域分别为TAVSPTTLR、YYEP、TTWKEYSH、GGQ(V)VK和PDGLPHY.结果表明,TAVSPTTLR、YYEP和TTWKEYSH序列与目前已知E2蛋白表位一致,说明它们是E2蛋白上的优势表位;GGQ(V)VK和PDGLPHY序列与预测表位一致,推测是E2蛋白上潜在的抗原表位.     

柔嫩艾美耳球虫EtMIC2的酵母表面展示

利用酿酒酵母表面展示系统展示柔嫩艾美耳球虫微线蛋白基因EtMIC2,为下一步研制活载体疫苗奠定基础。参照GenBank中柔嫩艾美耳球虫EtMIC2基因序列设计引物,以柔嫩艾美耳球虫的RNA为模板,利用RT-PCR扩增得到预期长度的产物,双酶切连接到酿酒酵母表面展示的载体pCTCON2,转化大肠杆菌TOP10,提取阳性质粒转化酿酒酵母菌株EBY100,诱导表达后,用抗EtMIC2蛋白质特异性抗体,做间接免疫荧光(IFA)检测EtMIC2蛋白的表达。结果显示,EtMIC2成功展示到酵母细胞表面,测得最佳诱导时间为48h。     

The Correlation Between Polymorphisms of Exon1 and Exon4 of DRB1 Gene and Brucellosis in Kazakh Sheep

The purpose of this experiment was to study the correlation between exon 1 and 4 polymorphisms of DRB1 gene and brucellosis in Kazakh sheep.Using RBPT serological tests to try sheep serum,reference in GenBank sheep MHC Class Ⅱ area DRB1 gene sequences (Accession No.:NC_040271.1),the exon 1 and 4 pieces designed primers,using PCR-SSCP and DNA sequencing technology to 230 Kazak sheep DRB1 gene polymorphism detection,analyze its polymorphism loci and the relationship between the Kazak sheep Brucella susceptibility.The results showed that 66 Kazakh sheep were positive for Brucella in RBPT test,and the positive detection rate was 28.7%.There was one SNP locus (F1-G22A) in exon 1 fragment,and sequencing determined two genotypes (GG and GA),the dominant allele and genotype were G and GG respectively,and the susceptibility genotype of the polymorphisms of F1-G22A was GA.Chi-square test showed that there was no significant correlation between the polymorphisms of DRB1 gene F1-G22A and Brucella susceptibility in Kazakh sheep (P>0.05).According to the analysis of bioinformatics online software,the F1-G22A polymorphic sites lead to the change of RNA secondary structure and the decrease of minimum free energy,and lead to the change of protein secondary structure.No SNPs were found in DRB1 exon 4 fragment.Therefore,there might be a certain correlation between the polymorphisms of DRB1 gene F1-G22A and Brucella susceptibility in Kazakh sheep.     

Polymorphism Study on DRB3 Gene Exon 2 in Tianzhu White Yak and Gannan Yak Arlud

In this study,CDS sequence of DRB3 gene exon 2 in Tianzhu White yak and Gannan yak were analyzed,a clean single chain was obtained to get the accurate haplotype by direct sequencing and amplification refractory mutation system (ARMS) method,the double chain of high heterozygosity was typed.The results showed that 65 SNPs and a codon insertion and deletion were discovered,all together separated to 30 haplotypes,in which seven haplotypes were found firstly,it should be peculiar to Tianzhu White yak and Gannan yak.Compared with published bovine DRB3 gene exon 2 haplotypes,the analysis results showed Tianzhu White yak and Gannan yak shared haplotypes of cattle (Bos taurus) and zebu (Bos indicus),which meaned they might crossed with cattle (Bos taurus) and zebu (Bos indicus).PAML analysis showed that 4,25,30,53,59,62,63,66,78 amino acid sites were affected by positive selection,and mainly occurred in Tianzhu yak,it had a certain relation with breeding history of Tianzhu White yak.     

The Correlation Analysis between Chinese Merino Sheep OLA-DQB1 Gene Exon 2 Genetic Polymorphism and Brucellosis Susceptibility

The single nucleotide polymorphisms (SNPs) of ovine lymphocyte antigen DQB1 (OLA-DQB1) gene exon 2 was amplified by PCR-SSCP method from 148 healthy and 60 infected with Brucella Chinese Merino sheep and then PCR products of different alleles were sequenced to determine the polymorphism loci of the gene.The differences in gene frequency and genotype frequency of each SNP loci were analyzed statistically to analyze its correlation with brucellosis susceptibility.The sequencing result showed that 43 SNPs were detected in 270 bp DNA sequence,the gene frequencies of G196A allele had extremely significant difference in case and control samples (P< 0.01),and its genotype frequencies presented significant difference (P< 0.05).Similarly,C211T allele was significantly different in case and control samples (P< 0.05).The results showed that the polymorphism of OLA-DQB1 gene exon 2 might be a significant association gene with brucellosis susceptibility.     

中国美利奴羊OLA-DQB1基因exon2遗传多态性与布鲁氏菌病易感性的关联分析

本试验采用PCR-SSCP方法对148只布鲁氏菌阴性和60只布鲁氏菌阳性中国美利奴羊白细胞表面抗原DQB1(OLA-DQB1)基因exon 2单核苷酸多态性(SNPs)进行了检测,之后挑选不同等位基因进行PCR产物测序,旨在确定该基因的多态性位点,并对每个SNP位点的等位基因频率、基因型频率进行统计分析,从而分析其多态性与布鲁氏菌病易感性的相关性.测序结果表明,在270 bp的序列内共检测到43个SNPs,其中G196A位点的等位基因频率在病例组和对照组中的分布存在极显著差异(P< 0.01),其基因型频率存在显著差异(P< 0.05);C211T位点的等位基因频率在病例组和对照组中存在显著差异(P< 0.05).由此表明,OLA-DQB1基因exon 2多态性与中国美利奴羊布鲁氏菌病易感性呈显著相关.     

MDCC-MSB1细胞酵母双杂交cDNA表达文库的构建与鉴定

提取生长状态良好的MDCC-MSB1细胞的mRNA,以5'端标记有生物素的Oligo dT primer为引物反转录,合成双链后连接Adapter。分级纯化后,通过BP重组反应构建入门文库,滴度为1×10⁵ CFU/mL,文库总容量为1.1×10⁶ CFU,平均插入片段长度为1190 bp,阳性重组率为100%。入门文库扩增后提取质粒,通过LR重组反应转化为表达文库,平均滴度为1×10⁵ CFU/mL,文库总容量为1.2×10⁶ CFU,平均插入片段长度为1087 bp,重组率为100%。构建的表达文库具有较高的质量,为研究鸡传染性贫血病毒的受体及其细胞嗜性奠定了基础。