Identification of molecular markers linked to a gene conferring resistance to coffee berry disease (Colletotrichum kahawae) in Coffea arabica

Coffee berry disease (CBD) caused by Colletotrichum kahawae is a major constraint to Arabica coffee (Coffea arabica) production in Africa. One source of resistance to the disease is a natural interspecific hybrid between C. arabica and C. canephora and its derivatives. This study is aimed at deciphering the genetic basis of the host resistance and identification of molecular markers associated with it. CBD is a mature stage disease and in the absence of a mature mapping population, early detection of disease reaction phenotypes of mapping individuals is required. Two F₂ populations from crosses of cv. Catimor (resistant) and cv. SL28 (susceptible) were screened for resistance by a two step procedure. First, half of each population was screened 6 weeks after germination by inoculating hypocotyls with the pathogen. The surviving seedlings (G1) were considered to be resistant and were raised in a nursery together with the other unscreened halves (G2). Secondly, after one year, all the seedlings (G1 + G2) were screened by inoculation. Analysis of 57 microsatellites and 31 AFLP markers in 56 and 95 seedlings from G1 and G2, respectively, were performed. Eight AFLP and two microsatellites markers linked tightly to the resistant phenotype were identified and mapped to one unique chromosomal fragment introgressed from C. canephora. The gene conferring the resistance was localized within an 11 cM segment. It is concluded that the locus carries a major resistance gene designated Ck‐1, which is likely to be synonymous to the T gene described in previous studies.     

Hypersensitive-like reaction conferred by the Mex-1 resistance gene against Meloidogyne exigua in coffee

The response of a susceptible coffee cultivar (Caturra) to infection by the root-knot nematode Meloidogyne exigua was compared histologically with that of cv. Iapar 59 possessing the recently identified Mex-1 resistance gene. The reproductive behaviour of the nematode was also compared in the two cultivars. Penetration and development in resistant plants were reduced in comparison with susceptible plants. Several cell features, including dark-stained cytoplasm and altered organelle structure, were observed in the resistant cultivar, indicating a hypersensitive-like (HR) response of the infested host cells. Features of giant cells were sometimes found beside necrotic-like areas, but the corresponding feeding sites were frequently associated with nematodes displaying abnormal shape. Six weeks after inoculation, root systems of cv. Caturra contained significantly more nematodes than those of cv. Iapar 59 (mean values 1574 and 41, respectively). The susceptible cultivar presented a minimum of 11 galls per plant, compared with only one or two galls per plant in the resistant cultivar. The findings are discussed in the context of plant–pathogen interactions.     

Biochemical responses of coffee resistance against Meloidogyne exigua mediated by silicon

Coffea arabica cultivars Catuaí 44 and IAPAR 59, susceptible and resistant, respectively, to the root knot nematode Meloidogyne exigua, were grown in pots containing Si‐deficient soil amended with either calcium silicate (+Si) or calcium carbonate (?Si). There was an increase of 152 and 100%, respectively, in Si content of root tissue of cvs Catuaí 44 and IAPAR 59 in the +Si compared to the ?Si treatment, but no significant difference between Si treatments for calcium content. Plants, assessed 150 days after inoculation (d.a.i.) showed that the number of galls (NG) and number of eggs (NE) significantly decreased by 16·8 and 28·1% respectively, for susceptible cv. Catuaí 44 in the presence of Si, whilst both NG and NE were significantly lower for cv. IAPAR 59 compared to the susceptible cultivar regardless of Si treatments. In a separate experiment, biochemical assays were carried out 5 and 10 d.a.i. There was no significant difference between Si treatments and cultivars for concentration of total soluble phenolics. The concentration of lignin‐thioglycolic acid (LTGA) derivatives significantly increased by 11·5% in roots of nematode‐inoculated plants of susceptible cv. Catuaí supplied with Si. In roots of inoculated plants of resistant cv. IAPAR 59, the increase was 23 and 10%, respectively, for treatments with and without silicon. Peroxidase (POX), polyphenoloxidase (PPO) and phenylalanine ammonia lyase (PAL) activities significantly increased in roots of inoculated plants compared with roots of non‐inoculated plants, regardless of cultivar or Si treatment. In +Si treatments at 10 d.a.i., POX activity in roots of nematode‐inoculated plants of cvs Catuaí 44 and IAPAR 59 increased by 39·9 and 31·3%, respectively; PPO increased by 54·9 and 56·1%; and PAL activity was also higher at 26·6 and 62·9%. It was concluded that supplying Si to coffee plants increases root resistance against M. exigua by decreasing its reproductive capacity.     

Beet armyworm (Spodoptera exigua) resistance to spinosad

Susceptibility to spinosad (Success®/Tracer®) of beet armyworm (Spodoptera exigua) from the southern USA and Southeast Asia was determined through exposure of second‐ and third‐instar larvae to dipped cotton leaves. LC₅₀ estimates of susceptibility of second‐ and third‐instar larvae of field populations ranged from 0.279 to 6.14 and 0.589 to 14.0 mg spinosad litre⁻¹, respectively. A Thailand population was 22‐ and 24‐fold less susceptible than the six other US field populations evaluated, and 85‐ and 58‐fold less susceptible than a reference laboratory population, respectively. From these results, we initiated experiments to test the hypothesis that the Thailand population was resistant to spinosad. F₁ crosses between the resistant Thailand population and a susceptible reference strain yielded individuals that were 22‐fold less sensitive to spinosad than the susceptible parent. This same resistant strain exhibited significantly greater survivorship on plants treated with spinosad in the field. Lastly, selection of an Arizona population resulted in a significant reduction in susceptibility to spinosad, further substantiating the hypothesis of a genetic basis for resistance to spinosad. These findings indicate a vulnerability of this new insecticide to resistance development in beet armyworm and should serve as a warning against excessive use of it. © 2000 Society of Chemical Industry     

Evaluation of the resistance of Coffea canephora to Oligonychus ilicis (Acari: Tetranychidae) and the preimaginal conditioning effect on resistance using a biological life table

Oligonychus ilicis (McGregor) (Acari: Tetranychidae), is one of the most important mite pests found in coffee plants. One way to reduce intensive pest attacks is management via resistant plants. The purpose of this study was to evaluate the resistance of 14 C. canephora genotypes to O. ilicis by antixenosis and antibiosis mechanisms and to determine the preimaginal conditioning effect on resistant genotypes using O. ilicis reared on C. canephora. Resistance by antixenosis was not found; however, nine genotypes showed resistance to O. ilicis via an antibiosis mechanism. Two of these resistant genotypes showed a more persistent resistance than the O. ilicis reared on C. canephora, which indicated that a previous host can affect the selection of a genotype by O. ilicis. The study may provide a model to evaluate the preimaginal conditioning effect on plant resistance, which can be useful for plant breeders.     

Effects of climatic factors on native arbuscular mycorrhizae and Meloidogyne exigua in a Brazilian rubber tree (Hevea brasiliensis) plantation

The root-knot nematode Meloidogyne exigua and arbuscular mycorrhizal (AM) fungi may both occur in the roots of Brazilian rubber trees ( Hevea brasiliensis ). AM fungi may stimulate plant growth whereas nematodes usually reduce it. Variations of native AM fungi and M. exigua populations in soil and roots of rubber trees were studied for one year in a Brazilian plantation. The number of AM spores in the soil was generally greater in the rainy season than in the dry season, although AM colonization of roots was unaffected by season. During the dry season, numbers of juveniles and eggs of M. exigua in roots were lower than in the rainy season. A site without nematodes in the soil or roots showed the greatest numbers of AM spores in soil and highest AM colonization of roots. A negative correlation was observed between the percentage of AM colonization and the number of second-stage juveniles in soil and second-stage juveniles and eggs in roots. Microscope observations revealed (i) tissue specificity for each of the microorganisms in the roots, with a cortical location of mycorrhizae and a mainly vascular cylinder location of nematodes, and (ii) that Gigaspora was the most abundant AM genus in the plantation soil.     

Selection for reproductive ability in Globodera pallida populations in relation to quantitative resistance from Solanum vernei and S. tuberosum ssp. andigena CPC2802

Four field populations of the nematode Globodera pallida were subjected to selection pressure for increased reproductive ability by rearing sub-populations continuously on four partially resistant potato genotypes for 12 generations. The resistance was derived from either Solanum vernei or from S. tuberosum spp. andigena CPC2802. After the 12th generation the original and sub-populations of nematodes were assessed for their reproductive ability on a susceptible genotype and on each of the partially resistant genotypes. Selection pressure was shown to have increased reproductive ability but the increases were specific to the source of resistance used. The average increase on the ex S. vernei clones was from 11% reproduction by the unselected populations to 35·5% reproduction after selection. On the clones derived from CPC2802, which had higher levels of resistance, the increases were larger with an average of 6·6% reproduction for the unselected but 47·4% reproduction after selection. The response to selection differed amongst the initial field populations with some rates of reproduction increased to as much as 79%. A RAPD based analysis of the original and sub-populations after selection indicated small but consistent changes in the genetic structure, which could have been a result of the selection pressure per se and/or the bottlenecks that the populations had gone though.     

Evolution of resistance to diclofop-methyl in ryegrass (Lolium multiflorum): investigation of the role of introgression with related species

Populations of Lolium multiflorum (ryegrass) exposed to increasing levels of herbicide selection have variability in the rate of evolution of herbicide resistance. We tested the hypothesis that herbicide dose and gene flow with related species are important factors regulating the rate of evolution of herbicide resistance in L. multiflorum. Seeds of the latter were planted in pure stands and in mixture with Festuca rubra and subjected to four herbicide rates. The level of herbicide resistance attained by the offspring after two years of selection was evaluated. Evolution of resistance observed in the field was compared to that calculated by Gressel and Segel's rotational model. ©1997 SCI     

Reaction of a heterozygous tomato hybrid bearing the Mi-1.2 gene to 15 Meloidogyne species

Many root-knot nematode (RKN) species (Meloidogyne spp.) are polyphagous and cultivated tomato (Solanum lycopersicum) is one of their preferential hosts, leading to significant losses. It is known that the dominant Mi-1.2 gene in tomato confers resistance to the three most important RKN species—M. incognita, M. javanica, and M. arenaria, and minor species—M. ethiopica, M. hispanica, and M. luci. However, little information is available about resistance of tomatoes carrying this gene to other tomato-infecting RKN species. In this study, resistance conferred by the Mi-1.2 gene/locus was evaluated against populations of 15 Meloidogyne species, employing tomato cultivars Santa Clara (homozygous recessive mi-1.2/mi-1.2, susceptible) and Debora Plus (heterozygous Mi-1.2/mi-1.2, resistant). Debora Plus was susceptible only to M. enterolobii and M. hapla, and was resistant to the other Brazilian populations of M. arenaria, M. ethiopica, M. exigua, M. hispanica, M. incognita, M. inornata, M. izalcoensis M. javanica, M. konaensis, M. luci, M. morocciensis, M. paranaensis, and M. petuniae. Mi-1.2 is located on tomato chromosome 6 within a cluster of seven homologous genes of the nucleotide-binding site leucine-rich repeat (NBS-LRR) family; further research is required to confirm if this multiple Meloidogyne spp. resistance phenotype is controlled exclusively by Mi-1.2 or by combined action of other closely linked genes. This evaluation of resistance of the Debora Plus cultivar to several Meloidogyne species suggests that the Mi-1.2 gene/locus may reduce losses induced by a wide range of Meloidogyne spp. Further studies using additional resistant cultivars and other populations of Meloidogyne spp. are needed to confirm these results.     

Selection of virulence in Meloidogyne chitwoodi to resistance in the wild potato Solanum fendleri

The possibilities of selecting virulence from a virtually avirulent root-knot nematode population towards resistance in wild potato have been investigated. Single egg masses of Meloidogyne chitwoodi, which had occasionally been produced on roots of resistant Solanum fendleri gave rise to eight lines after one generation on tomato. Five lines were able to circumvent completely the resistance of S. fendleri 93-114-12 resulting in a susceptible response similar to that of the control potato cv Nicola. Subsequently, a resistance test with other resistant genotypes of S. fendleri, S. bulbocastanum, S. stoloniferum and S. hougasii revealed that the virulent lines were also able to break through the resistance in most other species, but clear differences were noticed between the virulent lines. The results suggest a simple inheritance of virulence in M. chitwoodi towards resistance in S. fendleri. However, more virulence factors are involved to explain the differences on the other Solanum species between the virulent lines. The implications of the ease to select virulence with respect to the practical use of resistance in potato breeding and growing are discussed.     

青海青稞主栽品种(系)对条纹病和云纹病的抗性鉴定

本研究旨在明确青海青稞主栽品种和后备品种对条纹病和云纹病的抗性,以期为抗病育种及田间病害防治提供理论依据。试验采用田间自然病圃法,对青海主栽的30个青稞品种(系)进行了条纹病和云纹病田间抗性鉴定。结果表明,供试青稞品种(系)对2种病害的抗性存在显著差异,但缺乏免疫品种。对条纹病表现高抗的有13个品种(系),占鉴定总数的43.3%,其中主栽品种有3个,即‘门农1号’、‘昆仑13号’、‘巴青1号’。品系17发病率最低。对云纹病表现高抗的有品系1、品系2、品系6、品系17、品系28、RQKQ-3、RQKQ-5、RQKQ-6、RQKQ-7、RQKQ-8、‘门农1号’、‘互青2号’、‘北青6号’和‘昆仑10号’,共14个,其病情指数均在10以下;表现中抗的共有8个,分别为品系5、品系11、RQKQ-1、RQKQ-9、‘巴青1号’、‘北青3号’、‘北青7号’和‘昆仑13号’。     

梨抗黑星病AFLP标记筛选

 Pear scab caused by Venturia nashicola is one of the most destructive diseases of pears. Molecular markers linked to scab resistance gene is expected to be useful for improving pear. In this study, the F₁ population derived from the cross of ‘Huangguan’ and ‘Yali’ was analyzed genetically. The resistance of pear to scab was proved to be controlled by a single gene in a dominant manner. Bulked segregant analysis (BSA) was conducted to screen 64 fluorescent AFLP primer pairs. A marker designated as D3-365 was found to be linked to the resistant locus. Selective genotype linkage analysis showed that the genetic distance between the marker and the resistant locus was 14.9 cM.     

Identification and mapping of a rice blast resistance gene Pi-g(t) in the cultivar Guangchangzhan

A single dominant blast resistance gene was identified in Chinese indica rice ( Oryza sativa ) cv. Guangchangzhan (GCZ), which shows complete resistance to Japanese isolate Ken53-33 of Magnaporthe grisea . Genetic analysis of the backcross (BC₁) and second-generation (F₂) populations from a cross between susceptible cv. Lijiangxintuanheigu (LTH) and GCZ indicated that the resistance was conferred by one dominant gene. This gene was mapped on the long arm of chromosome 2 and flanked by RM166 and RM208 at distances of 4·00 ± 4·90 and 6·30 ± 4·89 cM (centiMorgans), respectively. It was designated tentatively as Pi-g(t) .     

Allelism of theFcu-1 andFoc genes conferring resistance to fusarium wilt in cucumber

The inheritance of resistance toFusarium oxysporum f.sp.cucumerinum race 1 was determined in the cucumber cv. WIS-248 by analyzing segregation of F₁, F₂, and BC populations of crosses with the susceptible cv. Straight-8. Resistance was conferred by a single dominant gene. In an allelism test, it was proven that theFcu-1 gene, which confers resistance toF. oxysporum f.sp.cucumerinum races 1 and 2 in cucumber cv. SMR-18 and theFoc gene, which confers resistance toF. oxysporum f.sp.cucumerinum race 2 in cucumber cv. WIS-248, are indistinguishable.     

Distribution and frequency of VKORC1 sequence variants conferring resistance to anticoagulants in Mus musculus

BACKGROUND: Emerging resistance to anticoagulant rodenticides may significantly impair house mouse (Mus musculus L.) control. As in humans and rats, sequence variants in the gene vitamin K epoxide reductase complex subunit 1 (VKORC1) of house mice are strongly implicated in the responses of mice to anticoagulants. This study gives a first overview of the distribution and frequency of such potentially resistance‐conferring sequence variants in house mice, based on tissue samples from 30 populations in Germany, Switzerland and the Azores. RESULTS: Except for one population from south Germany, sequence variants were found in individuals from all locations sampled (29 out of 30 sites surveyed), with less than 10% of the individuals matching the wild‐type genotype. The most frequent and widespread amino acid substitutions were Leu128Ser, Tyr139Cys and a group of linked sequence changes (Arg12Trp/Ala26Ser/Ala48Thr/Arg61Leu). Where these substitutions occurred as the sole variant, the proportion of homozygous individuals was 72–83%. CONCLUSIONS: An evaluation of published data revealed that the three most frequently found sequence variants are associated with a substantial loss of rodenticide efficacy of first‐generation anticoagulants (e.g. warfarin, coumatetralyl), as well as the second‐generation compound bromadiolone and most probably also difenacoum. Knowledge of the distribution and frequency of resistance‐conferring sequence variants will stimulate their further functional characterisation and facilitate the choice of effective active substances for house mouse control. Copyright © 2011 Society of Chemical Industry     

Inheritance of resistance to angular leaf spot (Pseudomonas syringae pv. lachrymans) in cucumber and identification of molecular markers linked to resistance

Angular leaf spot is a common disease of cucumber ( Cucumis sativus ) caused by Pseudomonas syringae pv. lachrymans . Genetics of resistance to this disease was investigated using two sets of parameters: (i) disease severity, i.e. the number and size of necrotic and chlorotic lesions on the infected leaves, and (ii) presence or absence of a chlorotic halo around the necrotic spots on the infected leaves. Disease severity appears to be controlled by multiple genes and the heritability of the resistance was estimated to be 53%. The presence or absence of the chlorotic halo was determined to be governed by a single gene, with the presence of the halo (the susceptible phenotype) being a dominant character. A RAPD marker linked to the gene conferring the chlorotic halo was identified. Genetic distance between this marker, OP-AO07, a polymorphic 420 bp amplicon in the DNA of the susceptible plants, and the locus encoding the chlorotic halo was estimated to be 13 cM.     

Molecular cytogenetics to characterize mechanisms of gene duplication in pesticide resistance

Recent advances in molecular cytogenetics empower construction of physical maps to illustrate the precise position of genetic loci on the chromosomes. Such maps provide visible information about the position of DNA sequences, including the distribution of repetitive sequences on the chromosomes. This is an important step toward unraveling the genetic mechanisms implicated in chromosomal aberrations (e.g., gene duplication). In response to stress, such as pesticide selection, duplicated genes provide an immediate adaptive advantage to organisms that overcome unfavorable conditions. Although the significance of gene duplication as one of the important events driving genetic diversity has been reported, the precise mechanisms of gene duplication that contribute to pesticide resistance, especially to herbicides, are elusive. With particular reference to pesticide resistance, we discuss the prospects of application of molecular cytogenetic tools to uncover mechanism(s) of gene duplication, and illustrate hypothetical models that predict the evolutionary basis of gene duplication. The cytogenetic basis of duplicated genes, their stability, as well as the magnitude of selection pressure, can determine the dynamics of the genetic locus (loci) conferring pesticide resistance not only at the population level, but also at the individual level. © 2017 Society of Chemical Industry     

辽宁花生主栽品种(系)对褐斑病和网斑病抗性鉴定

本研究旨在明确辽宁花生主栽品种(系)对花生褐斑病和网斑病的抗性,以期为抗病育种及田间病害防治提供理论依据。试验采用田间自然病圃法,对辽宁主栽的16个花生品种(系)进行了褐斑病和网斑病田间抗性鉴定。结果表明,供试花生品种(系)对两种叶部病害抗性存在显著差异,但缺乏免疫和高抗品种。对花生褐斑病抗性鉴定结果表明,‘阜花17’属抗病类型,‘鲁花11’、‘铁引花2号’、‘良青8号’、‘新花2号’和‘锦花15’属中抗类型,其余属高感或感病类型。对花生网斑病抗性鉴定结果显示:‘鲁花11’、‘铁引花2号’和‘白花生’属抗病类型,‘黑花生’、‘新花2号’、‘花育20’、‘锦花14’、‘新花1号’、‘锦花15’和‘良青8号’属中抗类型,其余属高感或感病类型。多数花生品种(系)对花生叶斑病综合抗性较差。