Effects of Different Soil Treatments on the Development of <Emphasis Type="Italic">Spongospora subterranea</Emphasis> f. sp. <Emphasis Type="Italic">subterranea</Emphasis> in Potato Roots and Tubers in the Greenhouse

Powdery scab caused by Spongospora subterranea f. sp. subterranea (Sss) causes extensive losses in potato production systems globally. Two pot experiments were established in the greenhouse in summer 2013 and winter 2014 to evaluate the effectiveness of different soil chemicals, fumigant, amendments and biological control agents (BCAs) against Sss in the rhizospheric soil, potato roots and tubers. The study used visual assessment methods to assess the effect of treatments on root galling and zoosporangia production, and qPCR to measure Sss concentration in the soil and in the potato roots and tubers. All six soil treatments, namely metam sodium, fluazinam, ZincMax, calcium cyanamide, Biocult and a combination of Bacillus subtilis and Trichoderma asperellum recorded significantly (P < 0.05) lower numbers of zoosporangia in the roots compared to the untreated control. The same effect was observed on the concentration of Sss DNA in the roots at tuber initiation. A more diverse picture was obtained when root gall scores at tuber initiation and Sss DNA in the rhizospheric soil at tuber initiation and harvesting were compared. Significant differences (P < 0.05) were also noted in disease severity, disease incidence, and tuber yield between metam sodium, fluazinam, ZincMax, calcium cyanamide and the untreated control. Calcium cyanamide gave the highest tuber yield. The study demonstrated the potential of soil treatments such as metam sodium, fluazinam, ZincMax and calcium cyanamide in managing Sss in potatoes by reducing the pathogen both in the rhizospheric soil and the roots of the potato plant.     

The Effect of Alfalfa Residue Incorporation on Soil Bacterial Communities and the Quantity of <Emphasis Type="Italic">Verticillium dahliae</Emphasis> Microsclerotia in Potato Fields in the Columbia Basin of Washington State,USA

Verticillium wilt, caused by the soil-borne fungus Verticillium dahliae, is one of the most important diseases of potato in North America. Soil incorporation of alfalfa residues prior to planting potato could be a nonchemical Verticillium wilt management tactic by reducing the number of viable microsclerotia in field soil. Verticillium dahliae microsclerotia were quantified in field soils where organic material from alfalfa was incorporated, and numbers of microsclerotia were compared to fields where alfalfa residue was not incorporated. In addition, bacterial metagenomics was utilized to characterize soils where organic material from alfalfa was or was not incorporated to determine if alfalfa residue incorporation facilitates the formation of soils that suppress or kill V. dahliae microsclerotia. The number of V. dahliae microsclerotia in soil was greater (P = 0.0003) in fields where crop residue was incorporated than fields without incorporation when chloropicrin was used as a fumigant. Conversely, the number of V. dahliae microsclerotia observed in potato plants did not differ (P = 0.4020) between fields where residues were or were not incorporated if chloropicrin was used. Alfalfa residue incorporation did not significantly alter the soil bacterial metagenome compared to fields not subject to residue incorporation in both years of study. Despite these conclusions, the method can be employed to analyze the effect of grower practices with the intent of linking a field practice to increasing soil bacterial diversity and decreasing Verticillium wilt severity on potato.     

Rooting Characteristics of <Emphasis Type="Italic">Solanum chacoense</Emphasis> and <Emphasis Type="Italic">Solanum tuberosum in Vitro</Emphasis>

The precise level of environmental control in vitro may aid in identifying genetically superior plant germplasm for rooting characteristics (RC) linked to increased foraging for plant nitrogen (N). The objectives of this research were to determine the phenotypic variation in root morphological responses of 49 Solanum chacoense (chc), 30 Solanum tuberosum Group Phureja – Solanum tuberosum Group Stenotomum (phu-stn), and three Solanum tuberosum (tbr) genotypes to 1.0 and 0.5 N rate in vitro for 28 d, and identify genotypes with superior RC. The 0.5 N significantly increased density of root length, surface area, and tips. All RC were significantly greater in chc than in either phu-stn or tbr. Based upon clustering on root length, surface area, and volume, the cluster with the greatest rooting values consisted of eight chc genotypes that may be utilized to initiate a breeding program to improve RC in potato.     

Maturity-Adjusted Resistance of Potato (<Emphasis Type="Italic">Solanum tuberosum</Emphasis> L.) Cultivars to Verticillium Wilt Caused by <Emphasis Type="Italic">Verticillium dahliae</Emphasis>

Verticillium wilt is a fungal disease of potato caused by two species of Verticillium, V. dahliae and V. albo atrum. The pathogen infects the vascular tissue of potato plants through roots, interfering with the transport of water and nutrition, and reducing both the yield and quality of tubers. We have evaluated the reaction of 283 potato clones (274 cultivars and nine breeding selections) to inoculation with V. dahliae under greenhouse conditions. A significant linear correlation (r = 0.4, p < 0.0001) was detected between plant maturity and partial resistance to the pathogen, with late maturing clones being generally more resistant. Maturity-adjusted resistance, that takes into consideration both plant maturity and resistance, was calculated from residuals of the linear regression between the two traits. Even after adjusting for maturity, the difference in the resistance of clones was still highly significant, indicating that a substantial part of resistance cannot be explained by the effect of maturity. The highest maturity-adjusted resistance was found in the cv. Navajo, while the most susceptible clone was the cv. Pungo. We hope that the present abundance of data about the resistance and maturity of 283 clones will help potato breeders to develop cultivars with improved resistance to V. dahliae.     

Germplasm Release: Three Tetraploid Potato Clones with Resistance to Common Scab

Common scab caused by the soil-borne bacterium Streptomyces scabies is a serious disease for the potato industry. We have identified a strong source of resistance in the diploid wild relative Solanum chacoense. This resistance has been introgressed into tetraploid cultivated potato via unilateral sexual polyploidization. This paper describes three hybrid clones (M8, M16, M17) for use by potato breeding programs to enhance resistance to common scab. They were created by crossing a diploid clone (50% S. tuberosum, 50% S. chacoense) to tetraploid cultivars, producing hybrids with 75% cultivated and 25% wild germplasm. The clones are male and female fertile, and are adapted to temperate zone production environments.     

Resistance to <Emphasis Type="Italic">Meloidogyne chitwoodi</Emphasis> Identified in Wild Potato Species

Meloidogyne chitwoodi (Columbia root-knot nematode, CRKN) can cause serious damage in potato production systems, decreasing tuber value in the fresh market and processing industries. Genetic resistance to CRKN was first identified from the wild diploid potato species Solanum bulbocastanum accession SB22 and was successfully introgressed into tetraploid potato breeding material. To expand the base of genetic resistance, 40 plant accessions representing nine wild potato species were screened for their resistance to M. chitwoodi. Greenhouse screening identified fifteen clones from S. hougasii, one clone from S. bulbocastanum, and one clone from S. stenophyllidium with moderate to high levels of resistance against three isolates of M. chitwoodi. Geographical mapping showed that the resistance sources identified in this and previous studies primarily originated in the states of Jalisco and Michoacán in west-central Mexico. These new sources of resistance will be introgressed into elite potato populations to facilitate the development of potato cultivars with durable resistance to M. chitwoodi.     

TerraRossa: A Mid-Season Specialty Potato with Red Flesh and Skin and Resistance to Common Scab and Golden Cyst Nematode

TerraRossa (POR01PG20–12) is a mid-season specialty potato, released by Oregon State University, and is a product of the Northwest Potato Variety (Tri-State) Development Program. This cultivar is unique among commercially available potato cultivars in that plants produce small- to medium-sized smooth, oblong- to long-shaped tubers with red skin and red flesh. Total tuber yields of TerraRossa are similar to Dark Red Norland and less than Red La Soda. Average tuber size (136 g) is less than both of the comparison cultivars, reflecting inherent differences in tuber size distribution. TerraRossa tubers have total antioxidant levels higher than traditional white fresh varieties and comparable to the All Blue purple potato, known for its high antioxidant levels. Sensory evaluations of TerraRossa tubers indicated that it has good culinary attributes following boiling, baking, and microwaving. Potato chips made from TerraRossa tubers retained their unique red color, which represents a novelty in the chipping industry. TerraRossa could be a good candidate for the organic sector due to its tolerance to common scab (Streptomyces scabies) and tuber late blight (Phytophthora infestans) and its resistance to golden cyst nematode (Globodera rostochiensis). Due to its high yields, high chipping quality, good culinary properties, high antioxidant content and disease resistance, TerraRossa is a good candidate for opening new specialty type markets, adding diversity to the marketplace.     

Transmission of Scab Resistance to Tetraploid Potato Via Unilateral Sexual Polyploidization

Resistance to common scab continues to be a high priority trait for potato breeders. We have identified a source of resistance in the diploid wild potato relative Solanum chacoense and have introgressed it into cultivated potato by crossing it to a dihaploid. A clone generated by crossing two full-sib hybrids is highly resistant and produces both 2n pollen and 2n eggs. This clone, named 4–48, is homozygous for a major QTL for scab resistance derived from S. chacoense. Clone 4–48 was reciprocally crossed to three round white cultivars Megachip, Pike, and White Pearl. Common scab resistance was transferred to tetraploid offspring, with transmission through the male parent generally more effective than through the female parent. The majority of progeny (70%) exhibited stability for resistance to common scab across environments. This germplasm will be useful for breeding new resistant cultivars.     

The Suppression of Verticillium Wilt of Potato Using Corn as a Green Manure Crop

Field studies involving the effects of growing sweet corn (Zea mays var. Jubilee sweet corn and var. Jubilee super-sweet corn) as a green manure for 2 or 3 seasons demonstrated both suppression of verticillium wilt by 60–70% (Verticillium dahliae Kleb.) and increased potato yields. Although these treatments showed no direct effect on V. dahliae soil populations, the colonization of V. dahliae on potato feeder-roots and in potato tissue of stem apices were reduced. Feeder-root colonization by V. dahliae was positively correlated with verticillium wilt incidence (P?≤?0.05 to P?≤?0.01) and negatively correlated with yield (P?≤?0.05). Corn green manures additionally increased populations of several soilborne fungi which included Ulocladium, and Fusarium equiseti. Specific nutritional and microbial effects were secondary to the effects of cropping practices. When compared with the fallow treatments for 1994, 1995, and 1997, the percentage yield increases for 1994 were: +34% for total yield, +57% for U.S. #1’s, and +127% for tubers >280 g; for 1995 (a year of reduced degree-days and decreased verticillium incidence): +14% for total yields, +15% for U.S. #1 yields, and +21% for tubers >280 g; for 1997: +24% for yield totals, +74% for U.S. #1’s and +179% for tubers >280 g. For establishing these yield benefits, stalks with and without ears of corn were used as green manures. Corn varieties differed for effectiveness as a green manure, which could be accounted for by differences of biomass. When compared with the super-sweet corn, the sweet corn produced an increase (>2-fold) of biomass with less than half of the resulting wilt incidence. When potato was grown consecutively for 2 years, the benefits from green manures became mostly eliminated. However, following 2 consecutive years of potato, a single green manure of sweet corn was sufficient to return the potato crop to the original benefits of verticillium suppression and increased yields. This occurred even though soilborne V. dahliae inoculum levels had increased by >4-fold from 45 to 182 cfu g^?1 of soil. Results of this study demonstrate the importance of green manures and soil-ecology to the management of the Russet Burbank potato.     

Relationship Between Tuber Storage Proteins and Tuber Powdery Scab Resistance in Potato

The potato genotypes (Solanum tuberosum L.) with russet tuber skin are generally resistant to powdery scab (Spongospora subterranea f.sp. subterranea or Sss). Lipoxygenase (LOX; EC 1.13.11.12) and patatin are two key storage proteins that are known to offer resistance to several diseases and insects. The objective of this study was to find out the relationship of these proteins in stored tubers with potato tuber powdery scab resistance, especially in russet skinned potatoes. An evaluation of potato germplasm with different tuber characteristics in a greenhouse environment over several years (2006–’11) suggests that russet skinned tuber genotypes (Mesa Russet, Centennial Russet and Russet Nugget) with negligible tuber disease severity index (DSI) and 100 % marketability were resistant to powdery scab. Higher physiological levels of LOX protein (on a dry weight basis) were negatively correlated with tuber DSI and positively correlated with tuber russet skin. Tuber total protein and patatin-lipase levels did not have a significant relationship with tuber powdery scab resistance. The proposed role of LOX protein in suberin- and/or non-suberin-mediated mechanisms of powdery scab resistance in russet skinned tubers are discussed here. The physiological levels of LOX protein can be considered as a useful marker for powdery scab resistance in potato breeding programs.     

Changing Phenology of Potato and of the Treatment for its Major Pest (Colorado Potato Beetle) – A Long-term Analysis

Potato Solanum tuberosum is one of the world’s four most important crops. Its cultivation is steadily increasing in response to the need to feed a growing world population. The yield of potato is influenced inter alia by both climate and pests. The main defoliator pest of potato is Colorado potato beetle Leptinotarsa decemlineata. Using data from a long-term experiment (1958–2013) in western Poland, we show that increasing temperature has affected the trophic relationship between potato and Colorado potato beetle. The planting, leafing, flowering and harvest dates for potato were advanced, after controlling for different cultivars, by 2.00 days, 3.04 days, 3.80 days and 3.42 days respectively for every 1 °C increase in temperature. In contrast, first treatment against Colorado potato beetle advanced by 4.66 days for every 1 °C increase in temperature, and, furthermore, the number of treatments against the beetle increased by 0.204 per 1 °C increase in temperature. This suggests that the beetle responds faster to increasing temperature than the plant does, but both parts of the system are probably greatly modified by farming practices.     

The Relationship Between Active Oxygen Metabolism and Resistance to Late Blight in Potato

The relationship between active oxygen metabolism and resistance to late blight (Phytophthora infestans) in potato (Solanum tuberosum L.) was studied for 72 h post-inoculation by comparing three resistant cultivars (low disease index) with three susceptible ones (high disease index). Activities of superoxide dismutase (SOD), catalase (CAT) and ascorbate peroxidase (APX), and the content of ascorbic acid (ASA), were higher in the resistant cultivars than in the susceptible ones. The production rate of the superoxide anion radical (O₂^?) was lower in the resistant cultivars than in the susceptible ones. These changes, which were associated with the potato plant’s response to infection with P. infestans, provide some insight into the physiological basis of resistance and may also provide a screening tool for resistance to late blight.     

Anastomosis Group and Pathogenicity of <Emphasis Type="Italic">Rhizoctonia solani </Emphasis>Associated with Stem Canker and Black Scurf of Potato in Heilongjiang Province of China

From 2012 to 2015, a total of 226 isolates of Rhizoctonia solani were collected from the stem cankers on potato stems and sclerotia on tubers from different potato cultivation areas of Heilongjiang Province, China. These isolates were assigned to the anastomosis group (AG) by performing conventional PCR assays using previously published primers for ITS-rDNA regions, as well as by observing hyphal interactions where appropriate. Most of the isolates were assigned to AG-3PT (58.85 %), and several were assigned to AG-5 (21.68 %), AG-2-1 (7.08 %) and AG-4 (12.39 %). Pathogenicity tests showed that the AG-3 and AG-5 isolates had the highest virulence, and the disease indices were 1.96a and 2.47a for stem and 1.48a and 1.6a for root (P < 0.05) after analyzed by LSD multiple comparisons, respectively. Both two isolates consistently caused large brown lesions with sunken on the potato stems and roots in in vitro and greenhouse experiments. This is the first detailed report on the AG composition, variability and pathogenicity of R. solani isolates associated with stem cankers and black scurf found on potatoes cultivated in Heilongjiang Province.     

The Low Potential of Teff (<Emphasis Type="Italic">Eragrostis tef</Emphasis>) as an Inoculum Source for <Emphasis Type="Italic">Verticillium dahliae</Emphasis>

Teff (Eragrostis tef) is a fine stemmed annual grass and gluten free small grain that is of interest as a forage, cover, or a rotation crop. Little is known about the susceptibility of teff to many diseases. Teff could be grown in rotation with potato in the northwestern United States provided teff cultivation is economical and does not increase soil populations for pathogens affecting rotation crops such as Verticillium dahliae. Verticillium dahliae infects a wide range of dicotyledonous plants, making it one of the most important fungal pathogens of crop plants in North America, including potato. The objective of this study was to quantify the susceptibility of teff to eight V. dahliae isolates and compare the susceptibility of teff to eggplant. Teff was confirmed as a host for V. dahliae, as indicated by the presence of microsclerotia in teff stems and roots after artificial inoculation in two years of greenhouse studies. The number of microsclerotia produced in teff did not differ between mint and potato pathotypes of V. dahliae. No V. dahliae isolate produced significantly greater numbers of microsclerotia than any of the seven other isolates tested in a two-year study. Microsclerotia production of V. dahliae in teff was consistently less than in susceptible eggplant cv. Night shadow in both greenhouse experiments (P?<?0.02). It is unlikely that teff infected by V. dahliae will proliferate microsclerotia of mint or potato-aggressive pathotypes, especially when compared to susceptible eggplant cultivars.     

Effective Management of the <Emphasis Type="Italic">Phthorimaea operculella</Emphasis> (Zeller) Using PVA Nanofibers Loaded with <Emphasis Type="Italic">Cinnamomum zeylanicum</Emphasis> Essential Oil

Phthorimaea operculella (Zeller) is one of the most common insect pests of cultivated potato in tropical and subtropical regions. In this research, a potential strategy to improve the insecticidal activity of plant essential oils for the effective management of P. operculella was studied. The insecticidal and residual effects of nanofiber oil (NFO) and pure essential oil (PEO) of Cinnamomum zeylanicum were assessed on PTM under laboratory conditions. The nanofibers were made by the electrospinning method using polyvinyl alcohol (PVA) polymer. The morphological characteristics of the nanofibers were evaluated by scanning electron microscopy and Fourier transform infrared spectroscopy. The chemical constituents of cinnamon essential oil (EO) were detected by GC/MS. Fumigant toxicity of NFO and PEO were evaluated on different growth stages (egg, male and female adults) of P. operculella. SEM and FTIR analyses confirmed the presence of EO on the nanofiber structure. The yield of the EO from C. zelanicum on the nanofibers was 1.86%. GC/MS analysis showed that cinnamaldehyde was the primary constituent (69.88%) of cinnamon EO. LC₅₀ values of C. zelanicum EO and NFO were 4.92 and 1.76 μl/l air for eggs, 0.444 and 0.212 μl/l air for female adults, and 0.424 and 0.192 μl/l air for male adults, respectively. Fumigant bioassays revealed that NFO was more toxic than C. zeylanicum oil against at all stages of P. operculella. The residual effect of PEO and NFO was evaluated against the egg stage of the P. operculella. NFO lost insecticidal effectiveness 47 days after application, while the efficacy of PEO decreased 15 days after application. Our results suggest that NFO of C. zeylanicum can be used as an effective new tool for the management of P. operculella.     

The Effects of <Emphasis Type="Italic">Pimpinella anisum</Emphasis> Essential Oils on Young Larvae <Emphasis Type="Italic">Leptinotarsa decemlineata</Emphasis> Say (Coleoptera: Chrysomelidae)

The effect of essential oil (EO) from anise (Pimpinellia anisum) on the mortality of young larvae of Colorado potato beetles has been studied. In our bioassays, P. anisum EO significantly increased the mortality of the second instar larvae of L. decemlineata. Significantly different values of LD₅₀ and LD₉₀ were established for acute (LD₅₀ = 1.76, and LD₉₀ = 8.29) as well as chronic toxicity (LD₅₀ = 0.45, and LD₉₀ = 1.01). Decrease of both values over experimental period was evident, which showed that the larval mortality was slow and cumulative. The composition of EO used for biological experiments was also assessed. The main component detected in EO from P. anisum was anethole (79.87%), followed by anisaldehyde (7.74%), estragole (5.88%) and β-linalool (1.07%). Within five days, residual concentration of EO decreased from 3.87 mg/g of dry weight immediately after foliar applications to 0.9 mg per g of dry weight. The effect of this slow evaporation could be explained by dominant presence of anethole or by the type of formulation and the addition of oil and tween. Results of our study demonstrate that EO from P. anisum has insecticidal properties that may lead to the development of new organic products for the control of Colorado potato beetles.     

Analysis of <Emphasis Type="Italic">Potato Mop-Top Virus</Emphasis> Survival Probability in Post-Harvest Storage

Potato mop top virus (PMTV) induced necrosis can cause tuber quality loss at harvest and storage. Stored potatoes help maintain a constant supply of potatoes to the market and processing industry. PMTV-induced necrosis continues to develop during storage and appropriate timelines are needed for growers to make marketing decisions of their potatoes before incurring any significant quality losses. Survival analysis was used to estimate the time to event occurrence (PMTV-induced necrosis) in four (red-, russet-, white-, and yellow-skinned) potato market types across six post-harvest assessments conducted over two years. At each assessment the presence and absence of PMTV-induced necrosis was recorded and probability of tuber survival was estimated. Survival curves were significantly different among the four market type potato cultivars (Log-Rank test, P < 0.0005). Red- and russet-market type cultivars showed low and high survival probability, respectively, demonstrating that red cultivars need priority marketing. The survival probabilities decreased with increased storage time during both years, indicating that PMTV-induced necrosis development is dependent on potato cultivar and post-harvest storage. The median (50% of tubers with symptoms) survival times were estimated as 167 and 214 days for red- and other market type potato cultivars. The information from this study could potentially help growers regulate storage times for their cultivars to minimize tuber quality loss due to PMTV-induced tuber necrosis.     

Water and air temperature impacts on rice (<Emphasis Type="Italic">Oryza sativa</Emphasis>) phenology

Air temperature (T_a) is commonly used for modeling rice phenology. However, since the growing point of rice is under water during the vegetative and the early part of the reproductive period, water temperature (T_w) is likely to have a greater influence on crop developmental rates than T_a during this period. To test this hypothesis, we monitored T_w, T_a, and crop phenology in three commercial irrigated rice fields in California, USA. Sampling locations were set up on along a transect from the water inlet into the field. (Water warms up as it moves into the field.) T_a averaged 22.7 °C across sampling locations within each field, but average seasonal T_w increased from 22 °C near the inlet to 23.4 °C furthest away from the inlet. Relative to T_w furthest from the inlet, low T_w near the inlet delayed time to panicle initiation (PI 5 days) and heading (HD 8 days) and the appearance of one yellow hull on the main stem panicle (R7 9 days). Using T_w instead of T_a when the active growing point is under water until booting (midway between PI and HD) in a thermal time model improved accuracy (root-mean-square error, RMSE) for predicting time to PI by 2.5 days and HD by 1.6 days and R7 by 1.8 days. This model was further validated under more typical field conditions (i.e., not close to cold water inlets) in six locations in California. Under these conditions, average T_w was 2.6 °C higher than T_a between planting and booting, primarily due to higher daily maximum T_w values. Using T_w in the model until booting improved RMSE by 1.2 days in predicting time to HD. Using T_w instead of T_a during this period could improve the accuracy of rice phenology models.     

Draft Genome Sequence of Potato Dry Rot Pathogen <Emphasis Type="Italic">Fusarium sambucinum</Emphasis> Fckl. F-4

Fusarium sambucinum is one of the most important causal agents that not only cause the dry rot disease of potato tubers in fields and stores worldwide but also capable of producing secondary metabolites toxic for people and animals. Here we present the first draft genome sequence of the strain (F-4) estimated to be around appx. 42.0 Mb. The genome has 12,845 protein coding genes with more than 35,900 exons and gene density of 3.13 per 10Kb. F. sambucinum is evolutionary more close to the F. graminearum among the Fusarium species complex. The genome sequence represents a valuable resource for understanding the pathogenecity and virulence factors, and their evolution within the complex and highly plastic genus Fusarium.