Application of multiplex quantitative polymerase chain reaction methods to detect common bacterial fish pathogens in Nile tilapia,Oreochromis niloticus,hatcheries in Costa Rica

Edwardsiella spp., Streptococcus spp., and Francisella noatunensis subsp. orientalis are some of the most important fish pathogens affecting global tilapia, Oreochromis spp., aquaculture. In Costa Rica, the aquaculture industry is dominated by freshwater‐cultured Nile tilapia, Oreochromis niloticus, which are raised in all seven national provinces. At present, little is known regarding the diversity of pathogens present in these facilities, and definitive identification of agents associated with disease outbreaks are rare. To evaluate the prevalence of common bacterial pathogens in these systems, this study used multiplex quantitative polymerase chain reaction (qPCR) assays targeting Edwardsiella, Streptococcus, and Francisella species as a diagnostic and surveillance tool. In 2017, seven different tilapia hatcheries were visited, and 350 fingerlings were subjected to necropsy and molecular diagnostic evaluation. Fish exhibiting gross signs of disease were subjected to histological and microbiological analysis. For the first time, Edwardsiella anguillarum was recovered and molecularly confirmed from diseased tilapia in Costa Rica. In addition, F. noatunensis subsp. orientalis was identified in a region of Costa Rica where it had not been previously reported.     

Francisella sp., an emerging pathogen of tilapia, Oreochromis niloticus (L.), in Costa Rica

Francisella sp. is an emergent bacterial pathogen that causes acute to chronic disease in warm and cold water cultured and wild fish species. During the past 3 years, the bacterium has been detected in tilapia, Oreochromis niloticus , cultured in Costa Rica. Infected fish presented non-specific clinical signs, such as erratic swimming, anorexia, anaemia, exophthalmia and high mortality. Upon macroscopic and microscopic examination, several internal organs (mainly spleen and kidney) were enlarged and contained white nodules. Histological examination revealed the presence of multifocal granulomatous lesions, with the presence of numerous small, pleomorphic, cocco-bacilli. The bacteria were isolated from infected tilapia on selective media and grown on several media with and without antibiotics. Specific PCR primers to the Francisella genus were used to confirm the preliminary diagnoses. In comparison with several bacterial 16S rRNA sequences, our isolate was found to share 99% identity with other Fransicella spp. isolated from fish, and more than 97% identity to the human pathogen Francisella tularensis . Koch's postulates were fulfilled after experimental intraperitoneal and gill exposure challenges.     

2001年秘鲁外海和哥斯达黎加外海茎柔鱼探捕结果及其分析

本文对2001年秘鲁外海和哥斯达黎加外海茎柔鱼探捕调查的海况、渔获、渔场和生物学等数据进行分析。结果表明秘鲁外海表层水温呈自东向西、自南向北逐渐升高的趋势,表层到100m水深存在温跃层;茎柔鱼的优势胴长为24～48cm,胴长和体重的关系为:Y=6×10~(-6)L~(3.2598)(R~2=0.9924);渔场主要集中在14°00′S、80°00′W附近海区。调查表明秘鲁外海和哥斯达黎加外海茎柔鱼渔场具有较高的开发价值,但茎柔鱼钓捕技术还有待进一步的研究。     

哥斯达黎加外海茎柔鱼耳石的微量元素

实验通过激光剥蚀电感等离子质谱法分析哥斯达黎加外海茎柔鱼耳石的微量元素,了解其微量元素组成及其与表温关系,推测其不同生活史阶段的栖息环境.结果表明,茎柔鱼耳石含有54种元素,其中Ca、Na和Sr为主要元素.总体耳石Sr/Ca大于太平洋褶柔鱼、巴塔哥尼亚枪乌贼和黵乌贼.胚胎期耳石Sr/Ca最高,随着年龄增加而下降.Sr/Ca与表温呈反比例关系.不同孵化月份的茎柔鱼在不同生长阶段的耳石Sr/Ca差异不明显.Ba/Ca可看做茎柔鱼垂直移动的指标元素,茎柔鱼仔鱼至成鱼期耳石Ba/Ca呈“U”型变化,与其幼体生活在海水表层,成体生活在较深层海水相对应.茎柔鱼耳石Mg/Ca核心高外围低,可能与耳石生长率逐渐减小有关,Mg/Ca与表温呈正相关.此外,研究认为茎柔鱼胚胎期是以自身携带的卵黄囊为营养物质,此时耳石的微量元素与亲体的遗传因素相关,与外界水环境无关.     

哥斯达黎加外海茎柔鱼耳石形态学分析

茎柔鱼是大洋性重要经济头足类,其耳石包含着重要的生态信息。根据2009年7-8月哥斯达黎加外海采集的茎柔鱼耳石样本,分析其耳石外部形态,探讨耳石形态差异及生长模式。研究认为,茎柔鱼左右耳石及其分区间的形态差异均不显著(P>0.05)。主成分分析认为,耳石总长(TSL)、吻侧区间长(RDL)、吻侧区夹角(RDA)可表征左耳石形态特征,TSL、吻区基线长(RBL)、RDA可表征右耳石形态特征。在整个生长过程中耳石各部分均异速生长,其形态变化趋势为整体狭长、吻区长窄、背区宽大,符合中上层头足类耳石特征。耳石生长表现为两个阶段,TSL为1 600 μm前后其耳石形态出现显著差异。RDL/TSL由上升变为下降(P<0.05),RBL生长速度迅速上升(P<0.01),RDA由下降变为上升(P<0.05),TSL＝1 600 μm可作为栖息水层变化的重要标志。     

Assessing the impact of hydropower and fisheries on downstream migrating silver eel, Anguilla anguilla, by telemetry in the River Meuse

Abstract –  European eel Anguilla anguilla is in strong decline. We assessed the relative impact of fisheries and hydropower during the downstream migration of silver eel in the River Meuse in the Netherlands using radio-telemetry. For this, 16 fixed detection stations (Nedap Trail-System^®) were used, each covering the entire river width, including all outlets to sea, and two covering the entrances of the two hydropower stations present. In September 2002, 150 silver eels were surgically implanted with Nedap-transponders and released at the catch site. Of these, 121 started to migrate downstream of which 37% successfully reached the North Sea. Hydropower mortality was at least 9% and assessed to be 16–26%. Fisheries mortality was at least 16% (reported recaptures) and estimated to be 22–26%. A clear difference was found in passage behaviour at hydropower stations, where 40% showed recurrence, in contrast to the river stations where this hardly occurred, indicating a hesitation to pass the turbines. Also a difference was found in diurnal pattern; 63% of the eels that passed through the turbines did so during the first 5 h of the night, whereas for the stations on free-flowing sections this was only 35%.     

Microgeographic genetic isolation in chub (Cyprinidae: Squalius cephalus) population of the Durance River: estimating fragmentation by dams

Dehais C, Eudeline R, Berrebi P, Argillier C. Microgeographic genetic isolation in chub (Cyprinidae: Squalius cephalus) population of the Durance River: estimating fragmentation by dams.
Ecology of Freshwater Fish 2010: 19: 267–278. © 2010 John Wiley & Sons A/S Abstract – Weirs and dams are wide spread throughout the world’s river systems. The most direct effect of these barriers is the limitation of organism movements, i.e., the alteration of connectivity by fragmentation of the aquatic habitat. Whereas the impact of fragmentation on migratory fish species has been well studied, insights on nonmigratory species are still needed. In particular, knowledge on the effects of dams on cyprinid populations at the watershed scale is lacking. Therefore, we studied the genetic structure of eleven chub (Squalius cephalus) samples lined up in the highly fragmented Durance River (France). Using five microsatellite loci, we show that even if the overall genetic differentiation is low, isolation by distance does occur and that genetic diversity increases from upstream to downstream. Dams seem to participate jointly with waterway distance in the explanation of this pattern. However more precise conclusions cannot be made. Guidance for future studies are given.     

Seasonal and diel patterns in the migrations of fishes between a river and a floodplain tributary

Nunn AD, Copp GH, Vilizzi L, Carter MG. Seasonal and diel patterns in the migrations of fishes between a river and a floodplain tributary. Ecology of Freshwater Fish 2010: 19: 153–162. © 2009 John Wiley & Sons A/S
Abstract –  The population behaviours associated with the migrations of fishes in lowland river ecosystems are amongst the most poorly-understood dispersal mechanisms of temperate freshwater organisms. This study evaluated the influence of four environmental variables (light levels, river discharge, water temperature and water velocity) on the timing, intensity and direction of fish movements between the River Avon (Hampshire, England) and a small floodplain tributary, Ibsley Brook, over a 12-month period. Using canonical correspondence analysis (CCA) to identify patterns of movement (by groups of species) and the relative strengths of explanatory variables in the data, the probability of fishes migrating between the river and tributary was determined using Bayesian modelling. The intensity and direction of fish movements between the river and tributary varied temporally, both on a diel and seasonal basis, and there were species- and age-specific patterns in behaviour. Diel movements appeared to be triggered by changes in light intensity and brook water velocity, whereas seasonal movements were mostly driven by changes in river discharge and water temperature, particularly those associated with floods. This study emphasises the importance of connectivity in river systems, as fishes migrated in all conditions, but especially during rapidly-rising discharge.     

长江流域典型区河-库水文网络连通综合评估

长江具备丰富的水资源和电力资源,近年来河网闸坝、水电等水利设施被大量建设,导致了连通性下降,从而带来一系列的生态环境问题,评估长江流域河-库连通性具有重要意义。本研究选择长江流域高坝大库（金沙江下游）、低坝枢纽（汉江中下游）和山区小水电（景谷）三种河-库连通类型进行研究。首先概化典型研究区河-库连通的水文网络模型,并将水电站、过渡区、河流汇聚点、闸坝作为重要的网络节点。然后基于网络的水文连通功能、生态环境功能和社会贡献功能构建水文网络连通评估指标体系,利用熵权模糊综合评估方法对典型河-库进行分析。结果表明,高坝大库和低坝枢纽连通性为四级（差）,山区小水电连通性为五级（极差）。并基于评估结果,对不同类型的河-库系统给出改善连通性的针对性建议。     

A bird's‐eye view of reservoirs in the Mississippi Basin tips a need for large‐scale coordination

Reservoirs are mostly managed at local scales as spatially independent units. A basin‐scale perspective may increase awareness at a broader scope and generate insight not evident at local scales. We examined the array of reservoir attributes and fisheries in the Mississippi Basin to identify management opportunities. The basin is the third largest in the world and includes over 1,700 reservoirs >100 ha, the most of any river basin. Our bird's‐eye view shows a piecemeal approach where reservoirs are mostly administered at the local level. Basin‐wide or catchment coordination to holistically address problems that recur across the basin is mostly lacking. A basin‐wide coordination arrangement could facilitate various facets of reservoir management. We reviewed governance arrangements in major river basins across the globe and concluded that the basin‐wide administrative layer we encourage for the Mississippi Basin may already exist in some basins but may not be directly applicable everywhere.     

Fish community responses to stream flow alterations and habitat modifications by small hydropower projects in the Western Ghats biodiversity hotspot,India

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The effect of managed hydropower peaking on the physical habitat, benthos and fish fauna in the River Bregenzerach in Austria

The lower reaches of the Bregenzerach, a river in western Austria, have been affected by heavy hydro-peaking discharges (up to 60 m³ s^?1) for several decades. In conjunction with a plan to construct a new power plant, mitigation measures were developed to reduce the adverse effects of hydro-peaking in this river reach. The impact assessment examined the effects of a new flow management system introduced in 1992. The study concentrated on three main components: abiotics (morphology, hydrology, hydraulics), fish and benthic fauna. Prior to mitigation, both the fish and invertebrate fauna were heavily affected by the peaking. Benthic biomass was less than 15% of that predicted by an altitude model. After mitigation benthic biomass recovered to about 60% of the model prediction. No post-mitigation improvement was found with respect to fish biomass. Flow velocity distribution data showed that rising surge releases had two distinct phases, a bed-filling and a flow acceleration phase. The present flow management system, based on a dual-flow logistic, resulted in increased base flows and reduced peak flows, but did not alter the ramping rates. The reduction of the adverse effects of the bed-filling phase was apparently responsible for the recovery of the benthic fauna. However, the unaltered ramping rate of the acceleration phase may have inhibited the development of the fish community. An analysis of the hydrograph demonstrated the possibility of adjusting the present management strategy to reduce the ramping rate of the acceleration phase, smoothing out the peak duration curve.     

Riverine spawning,long distance larval drift,and floodplain recruitment of a pelagophilic fish: A case study of golden perch (Macquaria ambigua) in the arid Darling River,Australia

1. Pelagic spawning riverine fish (pelagophils) spawn in free‐flowing river habitats with downstream drift of eggs and larvae but the spatial scale is often unknown, and this constitutes a major ecological knowledge gap.
2. In the arid Darling River in south‐eastern Australia, the present objectives were: (i) to determine the potential downstream dispersal distance of young golden perch (Macquaria ambigua); and (ii) to evaluate whether provision of environmental water enhanced dispersal of young fish from Menindee Lakes to the lower Darling River (LDR) while also cueing further spawning in downstream lotic reaches.
3. Golden perch spawned in unregulated lotic tributaries on a flood pulse and larvae drifted or dispersed >1,600 km downstream and entered large ephemeral productive floodplain lake nursery habitats as fully scaled fingerlings.
4. Planned releases of environmental water cued golden perch spawning in the LDR and enabled juvenile fish to disperse downstream from the Menindee Lakes nursery into receiving populations in the LDR, Great Darling Anabranch, and southern Murray River, with some fish potentially completing an active migration of >2,100 km by age 1 year.
5. The Darling River case study highlights the need for a system‐scale approach to the conservation management of pelagophilic fish, along with multi‐year perennial flow strategies to improve ecosystem integrity in large rivers globally.

     

The influence of hydrology on the recruitment of brown trout in an Alpine river,the Ybbs River,Austria

Abstract – We monitored yearly recruitment (1997–2008) of brown trout (Salmo trutta) in a fourth‐order Austrian Alpine river. The relative proportion of recruits to adult fish varied strongly among years (5.6–66.4%). These proportions were strongly correlated with specific flow patterns. High flows before and during the spawning period were positively correlated with recruitment, whereas high flows during incubation and emergence were negatively correlated with recruitment success. Unsteady flow modelling supported a causal hypothesis for these relationships in demonstrating that discharges > 30 m³·s^?1 resulted in substantial sediment motion (erosion and deposition) in suitable spawning areas within the study stretch.     

The commercial exploitation of a protected anadromous species,the river lamprey (Lampetra fluviatilis (L.)), in the tidal River Ouse,north‐east England

• 1. Throughout Europe, populations of anadromous fish and lampreys have declined over the past centuries due to human activities. River lamprey Lampetra fluviatilis are representative of such species and are listed in international conservation agreements.
• 2. Historic (1908–09 to 1913–14) and modern (1995–96 to 2003–04) data were available on commercial catches of river lampreys in the tidal Ouse, north‐east England. During 2003–04, additional traps were operated by the University of Durham, downstream of the commercial fishery.
• 3. Catch per unit effort (CPUE) in the modern commercial fishery showed considerable variation between fishing seasons, ranging from a median CPUE of 0.5 lampreys per trap per day in 2000–01 to a median of 22.3 lampreys per trap per day in 2003–04.
• 4. The estimated catch of adult river lampreys each season in the historic fishery ranged between 25 500 (1913–14) and 54 500 (1910–11). Recent catches tended to be smaller, with a minimum catch of 9083 lampreys (2000–01) and a maximum of 30 992 lampreys (2003–04).
• 5. CPUE increased with discharge, up to a point above which CPUE declined with further increase in discharge. Migratory activity may be reduced at high flows and not stimulated at low flows, although the fishing efficiency of the traps themselves was probably reduced during high flows.
• 6. Samples of river lampreys caught in the university's traps were marked and released. Based upon the number of recaptures, the absolute minimum relative exploitation level of the commercial traps, over the whole fishing season, was estimated as 9.9%. The effect of such a reduction in the spawning population upon future recruitment is at present unknown.
• 7. The population of river lampreys in the tidal Ouse is potentially threatened by an unregulated increase in fishing effort. Current legislation needs to be modified to allow effective fishery management.

Copyright © 2006 John Wiley & Sons, Ltd.     

Developing a landscape‐scale,multi‐species,and cost‐efficient conservation strategy for imperilled aquatic species in the Upper Tennessee River Basin,USA

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The decline of fisheries on the Madeira River,Brazil: The high cost of the hydroelectric dams in the Amazon Basin

Despite being considered beneficial by providing a clean and renewable source of energy, the construction of hydroelectric dams has extremely negative implications for Amazonian fisheries. This study investigated the impacts of the Santo Antônio and Jirau hydroelectric dams on the fishery stocks of the Madeira River. This investigation was based on fish catch data from the Z‐31 fishing colony, located in the municipality of Humaitá, in Amazonas State, Northern Brazil. Data were collected daily and provided information on the date of return from each trip, the fish species targeted, and the total catch (kg) between January 2002 and September 2017. The results indicated reductions of 39% in the mean annual catch and 34% in the mean monthly catches. These results highlight the high price paid by local fish communities for the development of hydroelectric power in the Amazon basin.     

Persistence of fish populations in the upper Paraná River: effects of water regulation by dams

Abstract –  River–floodplain systems present intense temporal variations in physical, chemical and biological factors. These variations are closely related to alterations in water levels, which have been attributed to the flood pulse. As several species are strictly related to the flood pulse to fulfil their life cycle, the pulse may be seen as a dispersal mechanism of species onto a floodplain. In this study, we determine how dam construction influenced the persistence of Prochilodus lineatus population, a large migratory fish species from the upper Paraná River floodplain. Data used were collected in two distinct periods, from April 1992 to March 1993 and from January 1999 to December 2001. Fish were collected using seining nets in six (monthly in the first period) and seven (quarterly in the second period) isolated lagoons. The fraction of occupied lagoons was high in the first period (higher than 0.65), when flood was intense. However, in the second period, when the flood pulse did not happen or was short, the fraction of occupied lagoons sharply decreased over time (from 0.85 to 0.22). For the first period, no model fitted to data, but for the second period, a negative linear model (named drought-dependent model) presented good fit ( r ² = 0.97). Therefore, it is possible to infer that long and intense flood pulses are important to maintain the persistence of P. lineatus populations in the floodplain. The artificial control of water levels prompted by dams disrupts this dynamic, reducing persistence to critical levels.     

Movement patterns of armado, Pterodoras granulosus, in the Paraná River Basin

Abstract –  We studied the migratory behaviour of armado, Pterodoras granulosus , in the Paraná River Basin of Brazil, Paraguay and Argentina, during 1997–2005. This species invaded the Upper Paraná River after upstream dispersal was facilitated when Itaipu Reservoir inundated a natural barrier. Fish were tagged ( N  = 8051) in the mainstems of the Yacyreta and Itaipu reservoirs, bays of major tributaries, the Paraná River floodplain above Itaipu Reservoir, and below dams. In all, 420 fish were recaptured of which 61% moved away from the release area. Fish moved a maximum of 215 km (mean 42), and at a maximum rate of 9.4 km·day⁻¹ (mean 0.6). Of the 256 armados that moved away from the release site, 145 moved upstream towards unimpounded stretches of the Paraná River and 111 moved downstream into the reservoir and bays of its tributaries (maximum 150 km). Based on the observed migratory movements, we suspect that most of the reproductive output originates in tributaries to the reservoirs. The ability of this species to expand its range presents a conundrum by pitting fishery management interests against conservation needs. Maintenance of the important armado fisheries depends on the ability of the species to migrate freely to use spawning and nursery areas in reservoir tributaries and floodplains. However, its ability to migrate long distances can allow this non-native species the opportunity to invade most of the Upper Paraná River.